Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009760

Physical Location & Seq

Genomic Coordinates Reverse (-)

1161085 .. 1163501

Gene Structure 2417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0014500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGCTTGTTCATCATCAAATATATGGAGGGTGACAACACTTGACTCTGGCTCAAAAATTTCAAGCTACTTTAGCAACCCTGCCTCCATGTTCCTCTTCTTTTCCACTACCATTCCCAACAAACGGCGGCGTCTAATCGCTTGTTCATTAGATCCCATCTCCACTTCATCACTAACATCTCAGAATGCTACTCACAAGAACAGAACAGACAAGAAATCTGTTGAAATTCAAAGAACCAATGATGAGACTTTCTCTGTTTTACACAGTGATGAGCACAAACCATATGAGAAGAAGATCAAGAACAGCAAGAAGGATGAAGCTAAGAATAAGGGGTTGAAATCTGGTTCCAAAAAGCGACGACCTTTGTGGCAAAAGGCTTTTTTTGCATCCAAGAAGATGAGGAGTATTCTGTTGCTCAATGCAATCACAATTGTCTATGCAAGTGACATTCCAGTTATTAAAGAAGTTGAAACTATCATGGACCCAGCAGCCTTCTCAGCGGTGCGGTTTATCATGTCAGCAATTCCATTTCTGCCATTCGTGTTTCGATCACGGGGTGATGTTCAGATCCGAAATGCAGGGATTGAGTTGGGGTTCTGGATCAGTCTAGGCTACCTTCTTGAGGCACTTGGTTTACTTACATCTGATGCTGGCCGTGCATCGTTTATTTCCCTCTTCACAGTTATTGTGGTACCTTTGCTTGATGGCTTGTTTGGATCAATCATACCTGCTAGAACCTGGTTCGGCCTTCTCATGTCTGCTCTTGGGGTTGGTATGCTGGAATGCAGCGGATCACCTCCAAATGTTGGAGATCTCTTCAACTTCTTGAGTGCAATATTTTTTGGAATTCACATGCTTCGAACTGAGCATATTTCAAGAAGCACAAAGAAGGAGAACTTCTTAGCAATTCTTGGATATGAGGTCAGTGTTGTTGCTGTCTTATCCACAATCTGGGTTTTTATTGGAGGGTGGTTTGATGGTGCCCAAACTTCCAACCAATTAACATGGACGTGGACAGAGATGTGGGATTGGCTTGTTGCATTTCCATGGATACCTGCACTTTATACTGGTGCATTTTCAACTGGGATATGCTTATGGATTGAGATTACAGCGATGCGCGATGTTTCAGCAACAGAAACAGCCATAATTTATGGGCTGGAGCCACTGTGGGGAGCTGGATTTGCATGGTTTCTTCTTGGTGAAAGATGGGGAGCACTTGGATGGATCGGTGCAGCTCTTGTGCTTGGTGGAAGCCTAGTGGTGCAGATATTTGGGTCCTCCACTTCTAAAGAATTTATAGTTTCTGAAGAGAGCAAGGAGAAAGGTGATCTCCTAAGGGTTCCAGTTGACCAAAAATTACAAAATGGTCTCTCTACTTCTCCATTAGTTGTCAGGTCCAAAAAGGATCTAACAGATTTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

474

Amino Acids

52.54

Weight (kDa)

9.18

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	135 - 259	4.2e-09	EamA-like transporter family
EamA	PF00892	270 - 421	1.3e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27880 AT5G53360 AT5G53360
fragaria_vesca	FvH4_4g04610 FvH4_5g04860
malus_domestica	MD06G1109400.v1.1 MD14G1130400.v1.1
prunus_persica	Prupe.5G122400_v2.0.a1
pyrus_communis	pycom06g10290
rosa_chinensis	RchiOBHm_Chr7g0194231
rosa_laevigata	RLG00000004208
rosa_multiflora	Rmu_sc0000901.1_g000003 Rmu_sc0009433.1_g000016
rosa_roxburghii	Rroxscaffold_3G00261480
rosa_rugosa	Rorug07G0014500 Rorug07G0014600
rosa_samantha	Rh7AG141900 Rh7BG142300 Rh7CG146000 Rh7DG143300
rosa_wichuraiana	Rw7G012130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	736, 1063
Acc65I	GGTACC	1 cut(s)	691
AccB1I	GGYRCC	2 cut(s)	691, 980
AccB7I	CCANNNNNTGG	2 cut(s)	806, 951
AccII	CGCG	1 cut(s)	1119
AciI	CCGC	4 cut(s)	127, 500, 505, 789
AclWI	GGATC	7 cut(s)	146, 562, 608, 724, 799, 1232, 1413
AcoI	YGGCCR	1 cut(s)	652
AcsI	RAATTY	4 cut(s)	57, 225, 846, 1292
AcuI	CTGAAG	1 cut(s)	1326
AcyI	GRCGYC	1 cut(s)	130
AdeI	CACNNNGTG	1 cut(s)	557
AfaI	GTAC	1 cut(s)	693
AfiI	CCNNNNNNNGG	5 cut(s)	123, 622, 806, 951, 1169
AgsI	TTSAA	8 cut(s)	63, 224, 230, 337, 470, 820, 876, 1080
AjiI	CACGTC	1 cut(s)	1011
AjnI	CCWGG	1 cut(s)	737
AluBI	AGCT	4 cut(s)	66, 320, 1175, 1235
AluI	AGCT	4 cut(s)	66, 320, 1175, 1235
Alw21I	GWGCWC	2 cut(s)	276, 1216
Alw26I	GTCTC	2 cut(s)	239, 1373
AlwI	GGATC	7 cut(s)	146, 562, 608, 724, 799, 1232, 1413
AoxI	GGCC	2 cut(s)	652, 745
ApeKI	GCWGC	3 cut(s)	488, 786, 1232
ApoI	RAATTY	4 cut(s)	57, 225, 846, 1292
Asp718I	GGTACC	1 cut(s)	691
AspLEI	GCGC	1 cut(s)	1119
AspS9I	GGNCC	3 cut(s)	481, 1275, 1395
AsuHPI	GGTGA	5 cut(s)	43, 569, 786, 1211, 1337
AsuII	TTCGAA	1 cut(s)	859
AvaII	GGWCC	3 cut(s)	481, 1275, 1395
AxyI	CCTNAGG	1 cut(s)	1334
BaeGI	GKGCMC	1 cut(s)	985
BanI	GGYRCC	2 cut(s)	691, 980
Bbv12I	GWGCWC	2 cut(s)	276, 1216
BbvI	GCAGC	3 cut(s)	500, 798, 1244
BccI	CCATC	5 cut(s)	164, 698, 971, 1200, 1215
BceAI	ACGGC	2 cut(s)	140, 639
BciT130I	CCWGG	1 cut(s)	739
BciVI	GTATCC	1 cut(s)	1044
BcoDI	GTCTC	2 cut(s)	239, 1373
BfaI	CTAG	3 cut(s)	608, 732, 1256
BfmI	CTRYAG	1 cut(s)	1421
BfuAI	ACCTGC	2 cut(s)	736, 1063
BfuI	GTATCC	1 cut(s)	1044
BglII	AGATCT	1 cut(s)	811
BisI	GCNGC	4 cut(s)	128, 489, 787, 1233
BlsI	GCNGC	4 cut(s)	129, 490, 788, 1234
Bme1390I	CCNGG	1 cut(s)	739
Bme18I	GGWCC	3 cut(s)	481, 1275, 1395
BmgBI	CACGTC	1 cut(s)	1011
BmgT120I	GGNCC	3 cut(s)	481, 1275, 1395
BmiI	GGNNCC	7 cut(s)	346, 483, 693, 982, 1161, 1276, 1341
BmrFI	CCNGG	1 cut(s)	739
BmrI	ACTGGG	1 cut(s)	1092
BmsI	GCATC	4 cut(s)	395, 637, 668, 1104
BmuI	ACTGGG	1 cut(s)	1092
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BpmI	CTGGAG	1 cut(s)	1178
Bpu14I	TTCGAA	1 cut(s)	859
BpuEI	CTTGAG	2 cut(s)	641, 847
BsaHI	GRCGYC	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	1373
BsaJI	CCNNGG	1 cut(s)	1046
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 1151, 1181
Bsc4I	CCNNNNNNNGG	5 cut(s)	123, 622, 806, 951, 1169
Bse1I	ACTGG	4 cut(s)	452, 1072, 1087, 1343
Bse21I	CCTNAGG	1 cut(s)	1334
BseBI	CCWGG	1 cut(s)	739
BseDI	CCNNGG	1 cut(s)	1046
BseGI	GGATG	3 cut(s)	319, 386, 1226
BseLI	CCNNNNNNNGG	5 cut(s)	123, 622, 806, 951, 1169
BseMII	CTCAG	3 cut(s)	194, 510, 855
BseNI	ACTGG	4 cut(s)	452, 1072, 1087, 1343
BseRI	GAGGAG	1 cut(s)	415
BseSI	GKGCMC	1 cut(s)	985
BseXI	GCAGC	3 cut(s)	500, 798, 1244
BseYI	CCCAGC	1 cut(s)	484
BsgI	GTGCAG	3 cut(s)	1041, 1251, 1283
Bsh1236I	CGCG	1 cut(s)	1119
BshFI	GGCC	2 cut(s)	654, 747
BshNI	GGYRCC	2 cut(s)	691, 980
BsiHKAI	GWGCWC	2 cut(s)	276, 1216
BslI	CCNNNNNNNGG	5 cut(s)	123, 622, 806, 951, 1169
BsmAI	GTCTC	2 cut(s)	239, 1373
BsmI	GAATGC	2 cut(s)	190, 788
BsnI	GGCC	2 cut(s)	654, 747
Bso31I	GGTCTC	1 cut(s)	1373
Bsp119I	TTCGAA	1 cut(s)	859
Bsp1286I	GDGCHC	3 cut(s)	276, 985, 1216
Bsp19I	CCATGG	1 cut(s)	1046
BspACI	CCGC	4 cut(s)	127, 500, 505, 789
BspANI	GGCC	2 cut(s)	654, 747
BspCNI	CTCAG	3 cut(s)	193, 509, 856
BspFNI	CGCG	1 cut(s)	1119
BspLI	GGNNCC	7 cut(s)	346, 483, 693, 982, 1161, 1276, 1341
BspMI	ACCTGC	2 cut(s)	736, 1063
BspPI	GGATC	7 cut(s)	146, 562, 608, 724, 799, 1232, 1413
BspT104I	TTCGAA	1 cut(s)	859
BspT107I	GGYRCC	2 cut(s)	691, 980
BspTNI	GGTCTC	1 cut(s)	1373
BsrI	ACTGG	4 cut(s)	452, 1072, 1087, 1343
BssECI	CCNNGG	1 cut(s)	1046
BssNI	GRCGYC	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	1046
Bst2UI	CCWGG	1 cut(s)	739
Bst4CI	ACNGT	3 cut(s)	266, 682, 1167
Bst6I	CTCTTC	4 cut(s)	101, 680, 821, 1302
BstACI	GRCGYC	1 cut(s)	130
BstBI	TTCGAA	1 cut(s)	859
BstC8I	GCNNGC	1 cut(s)	652
BstDEI	CTNAG	6 cut(s)	180, 321, 496, 864, 901, 1334
BstDSI	CCRYGG	1 cut(s)	1046
BstENI	CCTNNNNNAGG	1 cut(s)	620
BstF5I	GGATG	3 cut(s)	319, 386, 1226
BstFNI	CGCG	1 cut(s)	1119
BstHHI	GCGC	1 cut(s)	1119
BstMAI	GTCTC	2 cut(s)	239, 1373
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 383, 497, 656, 1181
BstNI	CCWGG	1 cut(s)	739
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	1 cut(s)	737
BstSFI	CTRYAG	1 cut(s)	1421
BstSLI	GKGCMC	1 cut(s)	985
BstUI	CGCG	1 cut(s)	1119
BstV1I	GCAGC	3 cut(s)	500, 798, 1244
BstX2I	RGATCY	4 cut(s)	151, 567, 811, 1405
BstYI	RGATCY	4 cut(s)	151, 567, 811, 1405
Bsu36I	CCTNAGG	1 cut(s)	1334
BsuI	GTATCC	1 cut(s)	1044
BsuRI	GGCC	2 cut(s)	654, 747
BtgI	CCRYGG	1 cut(s)	1046
BtgZI	GCGATG	2 cut(s)	1127, 1134
BtrI	CACGTC	1 cut(s)	1011
BtsCI	GGATG	3 cut(s)	319, 386, 1226
BtsIMutI	CAGTG	3 cut(s)	271, 931, 1163
BveI	ACCTGC	2 cut(s)	736, 1063
Cac8I	GCNNGC	1 cut(s)	652
CfoI	GCGC	1 cut(s)	1119
Cfr13I	GGNCC	3 cut(s)	481, 1275, 1395
CseI	GACGC	1 cut(s)	119
CsiI	ACCWGGT	1 cut(s)	737
Csp6I	GTAC	1 cut(s)	692
CviAII	CATG	8 cut(s)	88, 478, 514, 754, 853, 1005, 1047, 1185
CviQI	GTAC	1 cut(s)	692
DdeI	CTNAG	6 cut(s)	180, 321, 496, 864, 901, 1334
DraIII	CACNNNGTG	1 cut(s)	557
EaeI	YGGCCR	1 cut(s)	652
Eam1104I	CTCTTC	4 cut(s)	101, 680, 821, 1302
EarI	CTCTTC	4 cut(s)	101, 680, 821, 1302
Eco130I	CCWWGG	1 cut(s)	1046
Eco31I	GGTCTC	1 cut(s)	1373
Eco47I	GGWCC	3 cut(s)	481, 1275, 1395
Eco57I	CTGAAG	1 cut(s)	1326
Eco81I	CCTNAGG	1 cut(s)	1334
EcoNI	CCTNNNNNAGG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	1275
EcoRI	GAATTC	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	737
EcoT14I	CCWWGG	1 cut(s)	1046
ErhI	CCWWGG	1 cut(s)	1046
FaeI	CATG	8 cut(s)	91, 481, 517, 757, 856, 1008, 1050, 1188
FalI	AAGNNNNNCTT	2 cut(s)	881, 913
FatI	CATG	8 cut(s)	87, 477, 513, 753, 852, 1004, 1046, 1184
FauNDI	CATATG	1 cut(s)	283
Fnu4HI	GCNGC	4 cut(s)	128, 489, 787, 1233
FokI	GGATG	3 cut(s)	326, 373, 1233
Fsp4HI	GCNGC	4 cut(s)	128, 489, 787, 1233
FspBI	CTAG	3 cut(s)	608, 732, 1256
GlaI	GCGC	1 cut(s)	1118
GluI	GCNGC	4 cut(s)	128, 489, 787, 1233
GsaI	CCCAGC	1 cut(s)	488
GsuI	CTGGAG	1 cut(s)	1178
HaeIII	GGCC	2 cut(s)	654, 747
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	1119
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	8 cut(s)	91, 481, 517, 757, 856, 1008, 1050, 1188
Hin6I	GCGC	1 cut(s)	1117
HinP1I	GCGC	1 cut(s)	1117
HincII	GTYRAC	1 cut(s)	1348
HindII	GTYRAC	1 cut(s)	1348
HinfI	GANTC	1 cut(s)	44
HphI	GGTGA	5 cut(s)	43, 569, 786, 1211, 1337
Hpy166II	GTNNAC	3 cut(s)	635, 1014, 1348
Hpy188I	TCNGA	5 cut(s)	183, 567, 572, 646, 1306
Hpy188III	TCNNGA	5 cut(s)	298, 598, 620, 826, 876
Hpy8I	GTNNAC	3 cut(s)	635, 1014, 1348
Hpy99I	CGWCG	1 cut(s)	360
HpyAV	CCTTC	5 cut(s)	304, 502, 626, 758, 883
HpyCH4III	ACNGT	3 cut(s)	266, 682, 1167
HpyCH4IV	ACGT	1 cut(s)	1010
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 383, 497, 656, 1181
HpyF3I	CTNAG	6 cut(s)	180, 321, 496, 864, 901, 1334
HpySE526I	ACGT	1 cut(s)	1010
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	8 cut(s)	91, 481, 517, 757, 856, 1008, 1050, 1188
HspAI	GCGC	1 cut(s)	1117
KpnI	GGTACC	1 cut(s)	695
LmnI	GCTCC	3 cut(s)	1159, 1172, 1211
Lsp1109I	GCAGC	3 cut(s)	500, 798, 1244
LweI	GCATC	4 cut(s)	395, 637, 668, 1104
MabI	ACCWGGT	1 cut(s)	737
MaeI	CTAG	3 cut(s)	608, 732, 1256
MaeII	ACGT	1 cut(s)	1010
MaeIII	GTNAC	2 cut(s)	31, 443
MboII	GAAGA	8 cut(s)	88, 301, 304, 406, 667, 808, 1184, 1319
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	4 cut(s)	151, 567, 811, 1405
MhlI	GDGCHC	3 cut(s)	276, 985, 1216
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	787, 1017
MseI	TTAA	2 cut(s)	459, 1001
MslI	CAYNNNNRTG	4 cut(s)	267, 1009, 1045, 1219
MspA1I	CMGCKG	2 cut(s)	500, 789
MspR9I	CCNGG	1 cut(s)	739
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	2 cut(s)	190, 788
MvaI	CCWGG	1 cut(s)	739
MvnI	CGCG	1 cut(s)	1119
MwoI	GCNNNNNNNGC	5 cut(s)	72, 383, 497, 656, 1181
NcoI	CCATGG	1 cut(s)	1046
NdeI	CATATG	1 cut(s)	283
NlaIII	CATG	8 cut(s)	91, 481, 517, 757, 856, 1008, 1050, 1188
NlaIV	GGNNCC	7 cut(s)	346, 483, 693, 982, 1161, 1276, 1341
NmuCI	GTSAC	2 cut(s)	31, 443
NspI	RCATGY	1 cut(s)	856
NspV	TTCGAA	1 cut(s)	859
PctI	GAATGC	2 cut(s)	190, 788
PflMI	CCANNNNNTGG	2 cut(s)	806, 951
PkrI	GCNGC	4 cut(s)	129, 490, 788, 1234
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	1275
Psp5II	RGGWCCY	1 cut(s)	1275
Psp6I	CCWGG	1 cut(s)	737
PspFI	CCCAGC	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	737
PspN4I	GGNNCC	7 cut(s)	346, 483, 693, 982, 1161, 1276, 1341
PspPI	GGNCC	3 cut(s)	481, 1275, 1395
PspPPI	RGGWCCY	1 cut(s)	1275
PsuI	RGATCY	4 cut(s)	151, 567, 811, 1405
RsaI	GTAC	1 cut(s)	693
RsaNI	GTAC	1 cut(s)	692
RseI	CAYNNNNRTG	4 cut(s)	267, 1009, 1045, 1219
SaqAI	TTAA	2 cut(s)	459, 1001
SatI	GCNGC	4 cut(s)	128, 489, 787, 1233
Sau96I	GGNCC	3 cut(s)	481, 1275, 1395
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	739
SduI	GDGCHC	3 cut(s)	276, 985, 1216
SexAI	ACCWGGT	1 cut(s)	737
SfaNI	GCATC	4 cut(s)	395, 637, 668, 1104
SfcI	CTRYAG	1 cut(s)	1421
SfuI	TTCGAA	1 cut(s)	859
SinI	GGWCC	3 cut(s)	481, 1275, 1395
SmiMI	CAYNNNNRTG	4 cut(s)	267, 1009, 1045, 1219
SmlI	CTYRAG	2 cut(s)	620, 826
SmoI	CTYRAG	2 cut(s)	620, 826
SsiI	CCGC	4 cut(s)	127, 500, 505, 789
SspI	AATATT	1 cut(s)	837
SspMI	CTAG	3 cut(s)	608, 732, 1256
StyD4I	CCNGG	1 cut(s)	737
StyI	CCWWGG	1 cut(s)	1046
TaaI	ACNGT	3 cut(s)	266, 682, 1167
TaiI	ACGT	1 cut(s)	1013
TaqI	TCGA	2 cut(s)	547, 859
TauI	GCSGC	1 cut(s)	130
Tru1I	TTAA	2 cut(s)	459, 1001
Tru9I	TTAA	2 cut(s)	459, 1001
TscAI	CASTG	3 cut(s)	271, 931, 1170
TseFI	GTSAC	2 cut(s)	31, 443
TseI	GCWGC	3 cut(s)	488, 786, 1232
Tsp45I	GTSAC	2 cut(s)	31, 443
TspDTI	ATGAA	3 cut(s)	135, 156, 330
TspRI	CASTG	3 cut(s)	271, 931, 1170
Van91I	CCANNNNNTGG	2 cut(s)	806, 951
VpaK11BI	GGWCC	3 cut(s)	481, 1275, 1395
XagI	CCTNNNNNAGG	1 cut(s)	620
XapI	RAATTY	4 cut(s)	57, 225, 846, 1292
XceI	RCATGY	1 cut(s)	856
XspI	CTAG	3 cut(s)	608, 732, 1256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.