Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009760

Physical Location & Seq

Genomic Coordinates Reverse (-)

15635144 .. 15636278

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g10290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGATCGTCCCTTACTACATCAAACTCAGGCATGAGGCTCACTGCAACTTCAGACCATACAGTTGCCCTTATCCTGGATCTGATGAGTGCTCGGAGGTTGGGGATGTTCCATTTTTGGTTGACCATATGAGAGAAGATCACAAGGTTGACTTGCACATTGGGTCAACGTTTAATCACCTCTATGTTAAGTCGAATCACCGCGAAGTAGAGTGTGCAGCAAGGATGCTTATGGTTTTTAACTGTTACAACCAGTACTTCTGTCTGCACTTTGAAGCCTTCCACCTCGGCATAGCTCCGGTTTACATTGCATTCCTTCGCTTCATGGGCGATGCGGCTGAGGCACAAAGCTTCAGCTACAGATTGGAGGTGGGCAGCAACAGCAGGAAACTAATATGGGAAGGAACCCCTCGGAGCATCCGTGACAGCCATCAGAAAGTCAGGGACTGCCATGACGGACTCATAGTCCAGCGTAACATGGCACTTTTTTTCTCCGCTGGAGACGGGAAGGAGCTCAAGCTTCGGATCTCCGGACGGATTTGGAAGGACAACAGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

187

Amino Acids

21.58

Weight (kDa)

6.82

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_ZnF	PF21361	2 - 60	9.7e-16	Sina, zinc finger
Sina_TRAF	PF03145	80 - 176	1.7e-32	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27880 AT5G53360 AT5G53360
fragaria_vesca	FvH4_4g04610 FvH4_5g04860
malus_domestica	MD06G1109400.v1.1 MD14G1130400.v1.1
prunus_persica	Prupe.5G122400_v2.0.a1
pyrus_communis	pycom06g10290
rosa_chinensis	RchiOBHm_Chr7g0194231
rosa_laevigata	RLG00000004208
rosa_multiflora	Rmu_sc0000901.1_g000003 Rmu_sc0009433.1_g000016
rosa_roxburghii	Rroxscaffold_3G00261480
rosa_rugosa	Rorug07G0014500 Rorug07G0014600
rosa_samantha	Rh7AG141900 Rh7BG142300 Rh7CG146000 Rh7DG143300
rosa_wichuraiana	Rw7G012130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	204
AccIII	TCCGGA	1 cut(s)	530
AciI	CCGC	3 cut(s)	202, 335, 495
AclI	AACGTT	1 cut(s)	170
AclWI	GGATC	2 cut(s)	88, 533
AcuI	CTGAAG	2 cut(s)	37, 337
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	275
AhdI	GACNNNNNGTC	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	5 cut(s)	296, 351, 357, 514, 520
AluI	AGCT	5 cut(s)	296, 351, 357, 514, 520
Alw21I	GWGCWC	2 cut(s)	95, 516
Alw26I	GTCTC	1 cut(s)	495
AlwI	GGATC	2 cut(s)	88, 533
AlwNI	CAGNNNCTG	1 cut(s)	447
Aor13HI	TCCGGA	1 cut(s)	530
ApeKI	GCWGC	2 cut(s)	218, 375
AsuHPI	GGTGA	2 cut(s)	170, 191
BanII	GRGCYC	1 cut(s)	516
Bbv12I	GWGCWC	2 cut(s)	95, 516
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	230, 387
BccI	CCATC	1 cut(s)	438
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	1 cut(s)	559
BfmI	CTRYAG	1 cut(s)	358
BisI	GCNGC	3 cut(s)	219, 336, 376
BlsI	GCNGC	3 cut(s)	220, 337, 377
BmcAI	AGTACT	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	78
BmeRI	GACNNNNNGTC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	3 cut(s)	216, 322, 426
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	286, 410
BsaWI	WCCGGW	2 cut(s)	298, 530
BsaXI	ACNNNNNCTCC	2 cut(s)	406, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	306
BseAI	TCCGGA	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	286, 410
BseGI	GGATG	3 cut(s)	112, 231, 417
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	43, 330
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	2 cut(s)	230, 387
BsgI	GTGCAG	2 cut(s)	237, 251
Bsh1236I	CGCG	1 cut(s)	204
BsiHKAI	GWGCWC	2 cut(s)	95, 516
BsiSI	CCGG	2 cut(s)	299, 531
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	495
BsmBI	CGTCTC	1 cut(s)	495
BsmFI	GGGAC	1 cut(s)	458
BsmI	GAATGC	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	95, 516
Bsp13I	TCCGGA	1 cut(s)	530
Bsp143I	GATC	4 cut(s)	6, 80, 139, 525
BspACI	CCGC	3 cut(s)	202, 335, 495
BspCNI	CTCAG	2 cut(s)	42, 331
BspEI	TCCGGA	1 cut(s)	530
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	406
BspPI	GGATC	2 cut(s)	88, 533
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	286, 410
BssMI	GATC	4 cut(s)	6, 80, 139, 525
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	65, 245, 554
BstDEI	CTNAG	2 cut(s)	29, 339
BstF5I	GGATG	3 cut(s)	112, 231, 417
BstFNI	CGCG	1 cut(s)	204
BstKTI	GATC	4 cut(s)	9, 83, 142, 528
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	4 cut(s)	6, 80, 139, 525
BstMWI	GCNNNNNNNGC	3 cut(s)	327, 341, 381
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstSFI	CTRYAG	1 cut(s)	358
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	230, 387
BstX2I	RGATCY	2 cut(s)	80, 525
BstYI	RGATCY	2 cut(s)	80, 525
BtgZI	GCGATG	1 cut(s)	345
BtsCI	GGATG	3 cut(s)	112, 231, 417
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	43, 559
CaiI	CAGNNNCTG	1 cut(s)	447
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	4 cut(s)	35, 325, 452, 478
CviJI	RGCY	9 cut(s)	41, 278, 296, 338, 351, 357, 429, 514, 520
CviKI_1	RGCY	9 cut(s)	41, 278, 296, 338, 351, 357, 429, 514, 520
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	29, 339
DpnI	GATC	4 cut(s)	8, 82, 141, 527
DpnII	GATC	4 cut(s)	6, 80, 139, 525
DriI	GACNNNNNGTC	1 cut(s)	464
Eam1105I	GACNNNNNGTC	1 cut(s)	464
Ecl136II	GAGCTC	1 cut(s)	514
Eco24I	GRGCYC	1 cut(s)	516
Eco53kI	GAGCTC	1 cut(s)	514
Eco57I	CTGAAG	2 cut(s)	37, 337
EcoICRI	GAGCTC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	495
FaeI	CATG	4 cut(s)	38, 328, 455, 481
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	4 cut(s)	34, 324, 451, 477
FauNDI	CATATG	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	219, 336, 376
FokI	GGATG	3 cut(s)	119, 238, 404
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	3 cut(s)	219, 336, 376
FspBI	CTAG	1 cut(s)	559
GluI	GCNGC	3 cut(s)	219, 336, 376
GsuI	CTGGAG	1 cut(s)	519
HapII	CCGG	2 cut(s)	299, 531
Hin1II	CATG	4 cut(s)	38, 328, 455, 481
HincII	GTYRAC	3 cut(s)	124, 151, 168
HindII	GTYRAC	3 cut(s)	124, 151, 168
HindIII	AAGCTT	2 cut(s)	349, 518
HinfI	GANTC	2 cut(s)	196, 459
HpaII	CCGG	2 cut(s)	299, 531
HphI	GGTGA	2 cut(s)	170, 191
Hpy166II	GTNNAC	4 cut(s)	124, 151, 168, 304
Hpy188I	TCNGA	6 cut(s)	56, 85, 97, 414, 435, 525
Hpy188III	TCNNGA	1 cut(s)	531
Hpy8I	GTNNAC	4 cut(s)	124, 151, 168, 304
HpyAV	CCTTC	5 cut(s)	289, 326, 395, 502, 538
HpyCH4III	ACNGT	3 cut(s)	65, 245, 554
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	5 cut(s)	48, 157, 218, 268, 311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	327, 341, 381
HpyF3I	CTNAG	2 cut(s)	29, 339
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	4 cut(s)	38, 328, 455, 481
Kpn2I	TCCGGA	1 cut(s)	530
Kzo9I	GATC	4 cut(s)	6, 80, 139, 525
LmnI	GCTCC	3 cut(s)	301, 414, 511
Lsp1109I	GCAGC	2 cut(s)	230, 387
LweI	GCATC	3 cut(s)	216, 322, 426
MaeI	CTAG	1 cut(s)	559
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	3 cut(s)	245, 422, 473
MalI	GATC	4 cut(s)	8, 82, 141, 527
MboI	GATC	4 cut(s)	6, 80, 139, 525
MboII	GAAGA	1 cut(s)	149
MflI	RGATCY	2 cut(s)	80, 525
MhlI	GDGCHC	2 cut(s)	95, 516
MlyI	GAGTC	1 cut(s)	453
MnlI	CCTC	7 cut(s)	31, 91, 191, 296, 334, 361, 420
MroI	TCCGGA	1 cut(s)	530
MseI	TTAA	3 cut(s)	174, 189, 240
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	2 cut(s)	299, 531
MspR9I	CCNGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	327, 341, 381
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	4 cut(s)	6, 80, 139, 525
NlaIII	CATG	4 cut(s)	38, 328, 455, 481
NlaIV	GGNNCC	1 cut(s)	406
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PctI	GAATGC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	196
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	220, 337, 377
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	516
Psp1406I	AACGTT	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	447
PsuI	RGATCY	2 cut(s)	80, 525
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	516
SaqAI	TTAA	3 cut(s)	174, 189, 240
SatI	GCNGC	3 cut(s)	219, 336, 376
Sau3AI	GATC	4 cut(s)	6, 80, 139, 525
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	2 cut(s)	95, 516
SfaNI	GCATC	3 cut(s)	216, 322, 426
SfcI	CTRYAG	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SsiI	CCGC	3 cut(s)	202, 335, 495
SspMI	CTAG	1 cut(s)	559
SstI	GAGCTC	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	3 cut(s)	65, 245, 554
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	194
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	3 cut(s)	174, 189, 240
Tru9I	TTAA	3 cut(s)	174, 189, 240
TscAI	CASTG	2 cut(s)	50, 559
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	2 cut(s)	218, 375
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	1 cut(s)	313
TspGWI	ACGGA	3 cut(s)	410, 471, 550
TspRI	CASTG	2 cut(s)	50, 559
XspI	CTAG	1 cut(s)	559
ZrmI	AGTACT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.