Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009760

Physical Location & Seq

Genomic Coordinates Reverse (-)

20810521 .. 20813002

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1130400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCCCTGTCTGCTCAAAGTCCATGTTCCCACCAATCCACCAGTGAACCGGTGCCCGGCGTGTCTAGAAAAACTCGGAGACATTCGATGTCTGGCGTTGGAGAAGGTGGCAGAGTCACTAGAACTTCCAAGCAAGTATTGTTCTTTGGGGTGCATGGAGATCTTCCCTTACTACATCAAACTCAGGCATGAGGCTCACTGCAACTACAGACCATACAGTTGCCCTTATCCTGGATGTGATGAGTGCTCAGAGGTTGGGGATGTTCCTTTTTTGGTTGACCATCTGAGAGAAGATCACAAGGTTGACTTACACATTGGGCCAACGTTTAATCACCTCTATGTTAAGTCGAATAGCCTCGAAGTGGAGTGTGCAGCAAGGATGCTAATGGTGTTTAACTGTTACAACAAGTACTTCTGTCTGCACTTTGAAGCCTTCCACCTCGGCATAGCTCCGGTCTACATTGCATTCCTTCGCTTCATGGGCGACGCAGCTGAGGCACGAAGCTTCAGCTACAGACTGGAGGTGGGCAACAACGGCAGGAAACTAATATGGGAAGGAACCCCTCGGAGCATCCGTGACAGCCATCAGAAGGTCAGGAATAACCATGACGGTCTCATAATCCAGCATAACATGGCACTGTTTTTCTCGGGTGGAGACAGGAAGGAGCTCAAGCTTCGGATCTCTGGCCGGATTTGGAAGGACAACAGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

238

Amino Acids

27.26

Weight (kDa)

7.94

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_ZnF	PF21361	35 - 111	2.3e-23	Sina, zinc finger
Sina_TRAF	PF03145	131 - 227	2.9e-32	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27880 AT5G53360 AT5G53360
fragaria_vesca	FvH4_4g04610 FvH4_5g04860
malus_domestica	MD06G1109400.v1.1 MD14G1130400.v1.1
prunus_persica	Prupe.5G122400_v2.0.a1
pyrus_communis	pycom06g10290
rosa_chinensis	RchiOBHm_Chr7g0194231
rosa_laevigata	RLG00000004208
rosa_multiflora	Rmu_sc0000901.1_g000003 Rmu_sc0009433.1_g000016
rosa_roxburghii	Rroxscaffold_3G00261480
rosa_rugosa	Rorug07G0014500 Rorug07G0014600
rosa_samantha	Rh7AG141900 Rh7BG142300 Rh7CG146000 Rh7DG143300
rosa_wichuraiana	Rw7G012130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	456
AclI	AACGTT	1 cut(s)	323
AclWI	GGATC	1 cut(s)	686
AcoI	YGGCCR	1 cut(s)	685
AcuI	CTGAAG	1 cut(s)	490
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	4 cut(s)	55, 230, 361, 589
AgeI	ACCGGT	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	6 cut(s)	449, 491, 504, 510, 667, 673
AluI	AGCT	6 cut(s)	449, 491, 504, 510, 667, 673
Alw21I	GWGCWC	2 cut(s)	248, 669
Alw26I	GTCTC	3 cut(s)	72, 617, 648
AlwI	GGATC	1 cut(s)	686
Ama87I	CYCGRG	1 cut(s)	646
AoxI	GGCC	2 cut(s)	317, 685
ApeKI	GCWGC	2 cut(s)	371, 488
AsiGI	ACCGGT	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	317
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	646
BaeGI	GKGCMC	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	669
Bbv12I	GWGCWC	2 cut(s)	248, 669
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	383, 500
BccI	CCATC	2 cut(s)	288, 591
BceAI	ACGGC	1 cut(s)	550
BciT130I	CCWGG	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	3 cut(s)	72, 617, 648
BfaI	CTAG	3 cut(s)	65, 119, 712
BfmI	CTRYAG	2 cut(s)	205, 511
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	2 cut(s)	372, 489
BlsI	GCNGC	2 cut(s)	373, 490
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	2 cut(s)	56, 231
BmeT110I	CYCGRG	1 cut(s)	646
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	2 cut(s)	53, 559
BmrFI	CCNGG	2 cut(s)	56, 231
BmsI	GCATC	2 cut(s)	369, 579
BpmI	CTGGAG	1 cut(s)	539
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	653
BpuMI	CCSGG	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	2 cut(s)	439, 563
BsaWI	WCCGGW	2 cut(s)	48, 451
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 230, 361, 589
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	41, 522
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	439, 563
BseGI	GGATG	4 cut(s)	239, 265, 384, 570
BseLI	CCNNNNNNNGG	4 cut(s)	55, 230, 361, 589
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	4 cut(s)	196, 261, 275, 483
BseNI	ACTGG	2 cut(s)	41, 522
BseSI	GKGCMC	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	383, 500
BsgI	GTGCAG	2 cut(s)	390, 404
BshFI	GGCC	2 cut(s)	319, 687
BshNI	GGYRCC	1 cut(s)	51
BshTI	ACCGGT	1 cut(s)	48
BsiHKAI	GWGCWC	2 cut(s)	248, 669
BsiHKCI	CYCGRG	1 cut(s)	646
BsiSI	CCGG	4 cut(s)	49, 56, 452, 688
BslI	CCNNNNNNNGG	4 cut(s)	55, 230, 361, 589
BsmAI	GTCTC	3 cut(s)	72, 617, 648
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	319, 687
Bso31I	GGTCTC	1 cut(s)	617
BsoBI	CYCGRG	1 cut(s)	646
Bsp1286I	GDGCHC	3 cut(s)	56, 248, 669
Bsp143I	GATC	3 cut(s)	159, 292, 678
BspANI	GGCC	2 cut(s)	319, 687
BspCNI	CTCAG	4 cut(s)	195, 260, 276, 484
BspLI	GGNNCC	2 cut(s)	53, 559
BspPI	GGATC	1 cut(s)	686
BspT107I	GGYRCC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	41, 522
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	439, 563
BssMI	GATC	3 cut(s)	159, 292, 678
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	4 cut(s)	218, 398, 611, 639
BstDEI	CTNAG	4 cut(s)	182, 247, 284, 492
BstF5I	GGATG	4 cut(s)	239, 265, 384, 570
BstKTI	GATC	3 cut(s)	162, 295, 681
BstMAI	GTCTC	3 cut(s)	72, 617, 648
BstMBI	GATC	3 cut(s)	159, 292, 678
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 480, 494, 534
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	54, 229
BstSFI	CTRYAG	2 cut(s)	205, 511
BstSLI	GKGCMC	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	383, 500
BstX2I	RGATCY	2 cut(s)	159, 678
BstYI	RGATCY	2 cut(s)	159, 678
BsuRI	GGCC	2 cut(s)	319, 687
BtsCI	GGATG	4 cut(s)	239, 265, 384, 570
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	3 cut(s)	48, 196, 635
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	317
CseI	GACGC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	409
CspAI	ACCGGT	1 cut(s)	48
CviAII	CATG	6 cut(s)	23, 154, 188, 478, 605, 631
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	4 cut(s)	182, 247, 284, 492
DpnI	GATC	3 cut(s)	161, 294, 680
DpnII	GATC	3 cut(s)	159, 292, 678
EaeI	YGGCCR	1 cut(s)	685
Ecl136II	GAGCTC	1 cut(s)	667
Eco24I	GRGCYC	1 cut(s)	669
Eco31I	GGTCTC	1 cut(s)	617
Eco53kI	GAGCTC	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	490
Eco88I	CYCGRG	1 cut(s)	646
EcoICRI	GAGCTC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	669
FaeI	CATG	6 cut(s)	26, 157, 191, 481, 608, 634
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	6 cut(s)	22, 153, 187, 477, 604, 630
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	2 cut(s)	372, 489
FokI	GGATG	4 cut(s)	246, 272, 391, 557
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	2 cut(s)	372, 489
FspBI	CTAG	3 cut(s)	65, 119, 712
GluI	GCNGC	2 cut(s)	372, 489
GsuI	CTGGAG	1 cut(s)	539
HaeIII	GGCC	2 cut(s)	319, 687
HapII	CCGG	4 cut(s)	49, 56, 452, 688
HgaI	GACGC	1 cut(s)	494
Hin1II	CATG	6 cut(s)	26, 157, 191, 481, 608, 634
HincII	GTYRAC	2 cut(s)	277, 304
HindII	GTYRAC	2 cut(s)	277, 304
HindIII	AAGCTT	2 cut(s)	502, 671
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	4 cut(s)	49, 56, 452, 688
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	4 cut(s)	46, 277, 304, 457
Hpy188I	TCNGA	6 cut(s)	77, 250, 285, 567, 588, 678
Hpy188III	TCNNGA	2 cut(s)	65, 595
Hpy8I	GTNNAC	4 cut(s)	46, 277, 304, 457
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	7 cut(s)	97, 442, 479, 548, 583, 655, 691
HpyCH4III	ACNGT	4 cut(s)	218, 398, 611, 639
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	5 cut(s)	153, 201, 371, 421, 464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 480, 494, 534
HpyF3I	CTNAG	4 cut(s)	182, 247, 284, 492
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	6 cut(s)	26, 157, 191, 481, 608, 634
Kzo9I	GATC	3 cut(s)	159, 292, 678
LmnI	GCTCC	3 cut(s)	454, 567, 664
Lsp1109I	GCAGC	2 cut(s)	383, 500
LweI	GCATC	2 cut(s)	369, 579
MaeI	CTAG	3 cut(s)	65, 119, 712
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	3 cut(s)	114, 398, 575
MalI	GATC	3 cut(s)	161, 294, 680
MboI	GATC	3 cut(s)	159, 292, 678
MboII	GAAGA	2 cut(s)	154, 302
MflI	RGATCY	2 cut(s)	159, 678
MhlI	GDGCHC	3 cut(s)	56, 248, 669
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	8 cut(s)	184, 244, 344, 365, 449, 487, 514, 573
MseI	TTAA	3 cut(s)	327, 342, 393
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	4 cut(s)	49, 56, 452, 688
MspR9I	CCNGG	2 cut(s)	56, 231
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	4 cut(s)	10, 480, 494, 534
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	3 cut(s)	159, 292, 678
NlaIII	CATG	6 cut(s)	26, 157, 191, 481, 608, 634
NlaIV	GGNNCC	2 cut(s)	53, 559
NmeAIII	GCCGAG	1 cut(s)	420
NmuCI	GTSAC	2 cut(s)	114, 575
PcsI	WCGNNNNNNNCGW	1 cut(s)	571
PctI	GAATGC	1 cut(s)	464
PfoI	TCCNGGA	1 cut(s)	229
PinAI	ACCGGT	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	373, 490
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	669
Psp1406I	AACGTT	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	53, 559
PspPI	GGNCC	1 cut(s)	317
PsuI	RGATCY	2 cut(s)	159, 678
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	336
SacI	GAGCTC	1 cut(s)	669
SaqAI	TTAA	3 cut(s)	327, 342, 393
SatI	GCNGC	2 cut(s)	372, 489
Sau3AI	GATC	3 cut(s)	159, 292, 678
Sau96I	GGNCC	1 cut(s)	317
ScaI	AGTACT	1 cut(s)	410
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	56, 231
SduI	GDGCHC	3 cut(s)	56, 248, 669
SfaNI	GCATC	2 cut(s)	369, 579
SfcI	CTRYAG	2 cut(s)	205, 511
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SspMI	CTAG	3 cut(s)	65, 119, 712
SstI	GAGCTC	1 cut(s)	669
StyD4I	CCNGG	2 cut(s)	54, 229
TaaI	ACNGT	4 cut(s)	218, 398, 611, 639
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	3 cut(s)	85, 347, 357
TatI	WGTACW	1 cut(s)	408
Tru1I	TTAA	3 cut(s)	327, 342, 393
Tru9I	TTAA	3 cut(s)	327, 342, 393
TscAI	CASTG	3 cut(s)	48, 203, 642
TseFI	GTSAC	2 cut(s)	114, 575
TseI	GCWGC	2 cut(s)	371, 488
Tsp45I	GTSAC	2 cut(s)	114, 575
TspDTI	ATGAA	1 cut(s)	466
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	3 cut(s)	48, 203, 642
XbaI	TCTAGA	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	3 cut(s)	65, 119, 712
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.