Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009760

Physical Location & Seq

Genomic Coordinates Forward (+)

11425857 .. 11428139

Gene Structure 2283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG141900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAGGATGATGGTGTGGAATGTCTGTCAACCTGTGATGGGATCTATAAGGAACACATTTATCTCCGCCGCCTCTGCCGCCGCCGCCGTCACCACCGTCTTTCATTGGCCTCCGCCAATAAGTCTCGGGCAACAAACCTCCATGAACTTCTGCAATGCCCTGTCTGCACAAACTCTATGTACCCACCAATCAATCAGTGCCTAAATGGGCACACTCTGTGCTCCATTTGCAAATCGAAAGTAAAGAACTGCTGCCCAACTTGTAAAGAACAACTTGGAGACATCAGATGCCTGGCATTAGAGAAAGTCGCGGAGTCACTGAAACTTCCTTGCAAGTATCGCTCTTTGGGATGCATGGAGATCTTTCTTTACGACAAGAAAGTTAAGCATGAGGCTAAGTGTGACTTCAGACCATACAATTGCCCCTACCCTGGATCTGAGTGCTCAGCAGTTGGGGATATTGCTTTTCTGGTTGACCATCTGATGGTTGATCACAAGGTTGATATGCTCAATGCATGCAGCTTTGATCATCTTTATGTTAAGTCCACTCCCTGGGAGACAGAAAATGAAGCCAAGATGCTTATGGTATTTAACTGTTACAGCCATTACTTCTGCCTGCATTTTGAAGCCTTCCAGCTGGGCATTGCACCAGTTTACATTGCATTTCTCCGTTTCATGGGCAATGCGGTTGAAGCCCGAACCTTCAGCTACAGACTGGAGGTTGGAGCACATGGAAGGAAACTAATATGGGAAGGAACCCCTCGGAGCATACGTGAGAGCCATCAGAAGGTAAGGGATAGCCATGACGGTCTCATAATCCAGCGTAACATGGCACTCTTTTTTTCCACTGGAGAAAGGAAGGAGTTCAAGCTTCGGGTCACCGGACAGATATGGAAGGCCAAGAGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

303

Amino Acids

34.93

Weight (kDa)

8.75

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	53 - 88	4.9e-12	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	102 - 177	2e-28	Sina, zinc finger
Sina_TRAF	PF03145	197 - 294	2.4e-31	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27880 AT5G53360 AT5G53360
fragaria_vesca	FvH4_4g04610 FvH4_5g04860
malus_domestica	MD06G1109400.v1.1 MD14G1130400.v1.1
prunus_persica	Prupe.5G122400_v2.0.a1
pyrus_communis	pycom06g10290
rosa_chinensis	RchiOBHm_Chr7g0194231
rosa_laevigata	RLG00000004208
rosa_multiflora	Rmu_sc0000901.1_g000003 Rmu_sc0009433.1_g000016
rosa_roxburghii	Rroxscaffold_3G00261480
rosa_rugosa	Rorug07G0014500 Rorug07G0014600
rosa_samantha	Rh7AG141900 Rh7BG142300 Rh7CG146000 Rh7DG143300
rosa_wichuraiana	Rw7G012130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	484, 552
AccII	CGCG	1 cut(s)	311
AciI	CCGC	8 cut(s)	67, 70, 79, 82, 85, 114, 311, 686
AclWI	GGATC	2 cut(s)	50, 442
AcuI	CTGAAG	2 cut(s)	391, 688
AdeI	CACNNNGTG	1 cut(s)	219
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	6 cut(s)	39, 431, 484, 552, 676, 787
AgsI	TTSAA	3 cut(s)	626, 692, 868
AjnI	CCWGG	3 cut(s)	291, 430, 551
AluBI	AGCT	4 cut(s)	522, 637, 708, 871
AluI	AGCT	4 cut(s)	522, 637, 708, 871
Alw21I	GWGCWC	4 cut(s)	224, 446, 730, 908
Alw26I	GTCTC	4 cut(s)	129, 273, 551, 815
AlwI	GGATC	2 cut(s)	50, 442
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	2 cut(s)	108, 897
ApeKI	GCWGC	2 cut(s)	252, 519
Asp700I	GAANNNNTTC	1 cut(s)	863
AsuHPI	GGTGA	2 cut(s)	83, 871
AvaI	CYCGRG	1 cut(s)	126
BaeGI	GKGCMC	1 cut(s)	213
Bbv12I	GWGCWC	4 cut(s)	224, 446, 730, 908
BbvI	GCAGC	2 cut(s)	239, 531
BccI	CCATC	5 cut(s)	5, 32, 478, 486, 789
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	3 cut(s)	293, 432, 553
BclI	TGATCA	2 cut(s)	490, 526
BcoDI	GTCTC	4 cut(s)	129, 273, 551, 815
BfaI	CTAG	1 cut(s)	910
BfmI	CTRYAG	1 cut(s)	709
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	6 cut(s)	70, 79, 82, 85, 253, 520
BlpI	GCTNAGC	1 cut(s)	445
BlsI	GCNGC	6 cut(s)	71, 80, 83, 86, 254, 521
Bme1390I	CCNGG	3 cut(s)	293, 432, 553
BmeT110I	CYCGRG	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	757
BmrFI	CCNGG	3 cut(s)	293, 432, 553
BmsI	GCATC	3 cut(s)	278, 341, 567
BpmI	CTGGAG	2 cut(s)	737, 870
Bpu1102I	GCTNAGC	1 cut(s)	445
BsaAI	YACGTR	1 cut(s)	773
BsaI	GGTCTC	1 cut(s)	815
BsaJI	CCNNGG	4 cut(s)	430, 551, 552, 761
BsaWI	WCCGGW	1 cut(s)	881
BsaXI	ACNNNNNCTCC	2 cut(s)	757, 787
Bsc4I	CCNNNNNNNGG	6 cut(s)	39, 431, 484, 552, 676, 787
Bse1I	ACTGG	3 cut(s)	650, 720, 853
Bse3DI	GCAATG	4 cut(s)	161, 642, 657, 688
BseBI	CCWGG	3 cut(s)	293, 432, 553
BseDI	CCNNGG	4 cut(s)	430, 551, 552, 761
BseGI	GGATG	2 cut(s)	13, 356
BseLI	CCNNNNNNNGG	6 cut(s)	39, 431, 484, 552, 676, 787
BseMI	GCAATG	4 cut(s)	161, 642, 657, 688
BseMII	CTCAG	2 cut(s)	429, 459
BseNI	ACTGG	3 cut(s)	650, 720, 853
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	239, 531
BseYI	CCCAGC	1 cut(s)	637
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	311
BshFI	GGCC	2 cut(s)	110, 899
BsiHKAI	GWGCWC	4 cut(s)	224, 446, 730, 908
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	882
BslI	CCNNNNNNNGG	6 cut(s)	39, 431, 484, 552, 676, 787
BsmAI	GTCTC	4 cut(s)	129, 273, 551, 815
BsnI	GGCC	2 cut(s)	110, 899
Bso31I	GGTCTC	1 cut(s)	815
BsoBI	CYCGRG	1 cut(s)	126
Bsp1286I	GDGCHC	5 cut(s)	213, 224, 446, 730, 908
Bsp143I	GATC	5 cut(s)	42, 360, 434, 490, 526
Bsp1720I	GCTNAGC	1 cut(s)	445
BspACI	CCGC	8 cut(s)	67, 70, 79, 82, 85, 114, 311, 686
BspANI	GGCC	2 cut(s)	110, 899
BspCNI	CTCAG	2 cut(s)	430, 458
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	1 cut(s)	757
BspPI	GGATC	2 cut(s)	50, 442
BspTNI	GGTCTC	1 cut(s)	815
BsrDI	GCAATG	4 cut(s)	161, 642, 657, 688
BsrI	ACTGG	3 cut(s)	650, 720, 853
BssECI	CCNNGG	4 cut(s)	430, 551, 552, 761
BssMI	GATC	5 cut(s)	42, 360, 434, 490, 526
Bst2UI	CCWGG	3 cut(s)	293, 432, 553
Bst4CI	ACNGT	3 cut(s)	98, 596, 809
BstBAI	YACGTR	1 cut(s)	773
BstC8I	GCNNGC	2 cut(s)	517, 617
BstDEI	CTNAG	3 cut(s)	396, 438, 445
BstEII	GGTNACC	1 cut(s)	877
BstF5I	GGATG	2 cut(s)	13, 356
BstFNI	CGCG	1 cut(s)	311
BstKTI	GATC	5 cut(s)	45, 363, 437, 493, 529
BstMAI	GTCTC	4 cut(s)	129, 273, 551, 815
BstMBI	GATC	5 cut(s)	42, 360, 434, 490, 526
BstMWI	GCNNNNNNNGC	7 cut(s)	75, 78, 84, 165, 228, 339, 692
BstNI	CCWGG	3 cut(s)	293, 432, 553
BstNSI	RCATGY	1 cut(s)	519
BstPI	GGTNACC	1 cut(s)	877
BstSCI	CCNGG	3 cut(s)	291, 430, 551
BstSFI	CTRYAG	1 cut(s)	709
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	239, 531
BstX2I	RGATCY	3 cut(s)	42, 360, 434
BstYI	RGATCY	3 cut(s)	42, 360, 434
BsuRI	GGCC	2 cut(s)	110, 899
BtsCI	GGATG	2 cut(s)	13, 356
BtsIMutI	CAGTG	3 cut(s)	203, 317, 846
Cac8I	GCNNGC	2 cut(s)	517, 617
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	8 cut(s)	143, 355, 389, 516, 676, 731, 803, 829
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	3 cut(s)	396, 438, 445
DpnI	GATC	5 cut(s)	44, 362, 436, 492, 528
DpnII	GATC	5 cut(s)	42, 360, 434, 490, 526
DraIII	CACNNNGTG	1 cut(s)	219
EciI	GGCGGA	2 cut(s)	56, 103
Eco31I	GGTCTC	1 cut(s)	815
Eco57I	CTGAAG	2 cut(s)	391, 688
Eco88I	CYCGRG	1 cut(s)	126
Eco91I	GGTNACC	1 cut(s)	877
EcoO65I	GGTNACC	1 cut(s)	877
EcoRII	CCWGG	3 cut(s)	291, 430, 551
EcoT22I	ATGCAT	2 cut(s)	356, 517
FaeI	CATG	8 cut(s)	146, 358, 392, 519, 679, 734, 806, 832
FalI	AAGNNNNNCTT	4 cut(s)	258, 290, 389, 421
FatI	CATG	8 cut(s)	142, 354, 388, 515, 675, 730, 802, 828
FbaI	TGATCA	2 cut(s)	490, 526
Fnu4HI	GCNGC	6 cut(s)	70, 79, 82, 85, 253, 520
FokI	GGATG	2 cut(s)	20, 363
Fsp4HI	GCNGC	6 cut(s)	70, 79, 82, 85, 253, 520
FspBI	CTAG	1 cut(s)	910
GluI	GCNGC	6 cut(s)	70, 79, 82, 85, 253, 520
GsaI	CCCAGC	1 cut(s)	641
GsuI	CTGGAG	2 cut(s)	737, 870
HaeIII	GGCC	2 cut(s)	110, 899
HapII	CCGG	1 cut(s)	882
Hin1II	CATG	8 cut(s)	146, 358, 392, 519, 679, 734, 806, 832
HincII	GTYRAC	2 cut(s)	30, 475
HindII	GTYRAC	2 cut(s)	30, 475
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	882
HphI	GGTGA	2 cut(s)	83, 871
Hpy166II	GTNNAC	4 cut(s)	30, 475, 546, 655
Hpy188I	TCNGA	6 cut(s)	287, 410, 439, 483, 765, 786
Hpy8I	GTNNAC	4 cut(s)	30, 475, 546, 655
HpyAV	CCTTC	7 cut(s)	640, 712, 729, 746, 781, 853, 889
HpyCH4III	ACNGT	3 cut(s)	98, 596, 809
HpyCH4IV	ACGT	1 cut(s)	772
HpyF10VI	GCNNNNNNNGC	7 cut(s)	75, 78, 84, 165, 228, 339, 692
HpyF3I	CTNAG	3 cut(s)	396, 438, 445
HpySE526I	ACGT	1 cut(s)	772
Hsp92II	CATG	8 cut(s)	146, 358, 392, 519, 679, 734, 806, 832
Ksp22I	TGATCA	2 cut(s)	490, 526
Kzo9I	GATC	5 cut(s)	42, 360, 434, 490, 526
LmnI	GCTCC	3 cut(s)	227, 725, 765
Lsp1109I	GCAGC	2 cut(s)	239, 531
LweI	GCATC	3 cut(s)	278, 341, 567
MaeI	CTAG	1 cut(s)	910
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	6 cut(s)	89, 315, 401, 596, 824, 877
MalI	GATC	5 cut(s)	44, 362, 436, 492, 528
MboI	GATC	5 cut(s)	42, 360, 434, 490, 526
MfeI	CAATTG	1 cut(s)	418
MflI	RGATCY	3 cut(s)	42, 360, 434
MhlI	GDGCHC	5 cut(s)	213, 224, 446, 730, 908
MluCI	AATT	1 cut(s)	418
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	703
MnlI	CCTC	6 cut(s)	83, 121, 149, 385, 712, 771
Mph1103I	ATGCAT	2 cut(s)	356, 517
MroXI	GAANNNNTTC	1 cut(s)	863
MseI	TTAA	3 cut(s)	384, 540, 591
MslI	CAYNNNNRTG	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	637
MspI	CCGG	1 cut(s)	882
MspR9I	CCNGG	3 cut(s)	293, 432, 553
MunI	CAATTG	1 cut(s)	418
MvaI	CCWGG	3 cut(s)	293, 432, 553
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	7 cut(s)	75, 78, 84, 165, 228, 339, 692
NdeII	GATC	5 cut(s)	42, 360, 434, 490, 526
NlaIII	CATG	8 cut(s)	146, 358, 392, 519, 679, 734, 806, 832
NlaIV	GGNNCC	1 cut(s)	757
NmuCI	GTSAC	4 cut(s)	89, 315, 401, 877
NsiI	ATGCAT	2 cut(s)	356, 517
NspI	RCATGY	1 cut(s)	519
PaeI	GCATGC	1 cut(s)	519
PasI	CCCWGGG	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	769
PdmI	GAANNNNTTC	1 cut(s)	863
PflMI	CCANNNNNTGG	2 cut(s)	484, 552
PkrI	GCNGC	6 cut(s)	71, 80, 83, 86, 254, 521
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	773
Psp6I	CCWGG	3 cut(s)	291, 430, 551
PspEI	GGTNACC	1 cut(s)	877
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	3 cut(s)	291, 430, 551
PspN4I	GGNNCC	1 cut(s)	757
PsuI	RGATCY	3 cut(s)	42, 360, 434
PvuII	CAGCTG	1 cut(s)	637
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	384, 540, 591
SatI	GCNGC	6 cut(s)	70, 79, 82, 85, 253, 520
Sau3AI	GATC	5 cut(s)	42, 360, 434, 490, 526
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	3 cut(s)	293, 432, 553
SduI	GDGCHC	5 cut(s)	213, 224, 446, 730, 908
SfaNI	GCATC	3 cut(s)	278, 341, 567
SfcI	CTRYAG	1 cut(s)	709
SmiMI	CAYNNNNRTG	1 cut(s)	534
SphI	GCATGC	1 cut(s)	519
Sse9I	AATT	1 cut(s)	418
SsiI	CCGC	8 cut(s)	67, 70, 79, 82, 85, 114, 311, 686
SspMI	CTAG	1 cut(s)	910
StyD4I	CCNGG	3 cut(s)	291, 430, 551
TaaI	ACNGT	3 cut(s)	98, 596, 809
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	1 cut(s)	236
TasI	AATT	1 cut(s)	418
TauI	GCSGC	4 cut(s)	72, 81, 84, 87
Tru1I	TTAA	3 cut(s)	384, 540, 591
Tru9I	TTAA	3 cut(s)	384, 540, 591
TscAI	CASTG	3 cut(s)	203, 324, 853
TseFI	GTSAC	4 cut(s)	89, 315, 401, 877
TseI	GCWGC	2 cut(s)	252, 519
Tsp45I	GTSAC	4 cut(s)	89, 315, 401, 877
TspDTI	ATGAA	4 cut(s)	93, 159, 582, 664
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	3 cut(s)	203, 324, 853
Van91I	CCANNNNNTGG	2 cut(s)	484, 552
XceI	RCATGY	1 cut(s)	519
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	863
XspI	CTAG	1 cut(s)	910
Zsp2I	ATGCAT	2 cut(s)	356, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.