Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009760

Physical Location & Seq

Genomic Coordinates Forward (+)

10532873 .. 10534614

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG142300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAGGATGATGGTGTGGAATGTTTGTCAACCTGTGATGGGATCTATAAGGAACACATTTATCACCGCCGCCGTCGTCACCACCGTCTTTCATTGGCCTCCGCCAATAAGTCTCGGGCTACAAACCTCCATGAACTTCTGCAATGCCCTGTCTGCACAAACTCTATGTACCCACCAATCAATCAGTGCCTAAATGGGCACACTCTGTGCTCCATTTGCAAATCGAAAGTAAAGAACTGCTGCCCAACTTGTAGAGAACAACTTGGAGACATCAGATGTCTGGCATTAGAGAAAGTCGCGGAGTCACTGAAACTTCCTTGCAAGTATTGCTCTTTGGGATGCATGGAGATCTTTCTTTACTACAAGAAAGTTAAGCATGAGGCTAAGTGTGACTTCAGACCATACAATTGCCCCTACCCTGGATCTGAGTGCTCAGCAGTTGGGGATATTGCTTTTCTGGTTGACCATCTGATAGTTGATCACAAGGTTGATATGCACAATGCATGCAGCTTTGATCATCTTTATGTTAAGTCCACTCCCTGGGAGACAGAAAATGAAGCCAAGATGCTTATGGTATTTAACTGTTACAGCCATTACTTCTGCCTGCATTTTGAAGCCTTCCAGCTGGGCATTGCACCAGTTTACATTGCATTTCTCCGTTTCATGGGCAATGCGGTTGAAGCCCGAACCTTCAGCTACAGACTGGAGGTTGGAGCACATGGAAGGAAACTAATATGGGAAGGAACCCCTCGGAGCATACGTGAGAGCCATCAGAAGGTAAGGGATAGCCATGACGGTCTCATAATCCAGCGTAACATGGCACTCTTTTTTTCCACTGGAGAAAGGAAGGAGTTCAAGCTTCGGGTCACCGGACAGATATGGAAGGCCAAGAGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

299

Amino Acids

34.45

Weight (kDa)

8.6

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	49 - 84	4.8e-12	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	98 - 173	5.9e-27	Sina, zinc finger
Sina_TRAF	PF03145	193 - 290	2.3e-31	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27880 AT5G53360 AT5G53360
fragaria_vesca	FvH4_4g04610 FvH4_5g04860
malus_domestica	MD06G1109400.v1.1 MD14G1130400.v1.1
prunus_persica	Prupe.5G122400_v2.0.a1
pyrus_communis	pycom06g10290
rosa_chinensis	RchiOBHm_Chr7g0194231
rosa_laevigata	RLG00000004208
rosa_multiflora	Rmu_sc0000901.1_g000003 Rmu_sc0009433.1_g000016
rosa_roxburghii	Rroxscaffold_3G00261480
rosa_rugosa	Rorug07G0014500 Rorug07G0014600
rosa_samantha	Rh7AG141900 Rh7BG142300 Rh7CG146000 Rh7DG143300
rosa_wichuraiana	Rw7G012130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	540
AccII	CGCG	1 cut(s)	299
AciI	CCGC	5 cut(s)	67, 70, 102, 299, 674
AclWI	GGATC	2 cut(s)	50, 430
AcuI	CTGAAG	2 cut(s)	379, 676
AdeI	CACNNNGTG	1 cut(s)	207
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	5 cut(s)	39, 419, 540, 664, 775
AgsI	TTSAA	3 cut(s)	614, 680, 856
AjnI	CCWGG	2 cut(s)	418, 539
AluBI	AGCT	4 cut(s)	510, 625, 696, 859
AluI	AGCT	4 cut(s)	510, 625, 696, 859
Alw21I	GWGCWC	4 cut(s)	212, 434, 718, 896
Alw26I	GTCTC	4 cut(s)	117, 261, 539, 803
AlwI	GGATC	2 cut(s)	50, 430
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	2 cut(s)	96, 885
ApeKI	GCWGC	2 cut(s)	240, 507
Asp700I	GAANNNNTTC	1 cut(s)	851
AsuHPI	GGTGA	3 cut(s)	56, 71, 859
AvaI	CYCGRG	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	201
Bbv12I	GWGCWC	4 cut(s)	212, 434, 718, 896
BbvI	GCAGC	2 cut(s)	227, 519
BccI	CCATC	4 cut(s)	5, 32, 474, 777
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	2 cut(s)	420, 541
BclI	TGATCA	2 cut(s)	478, 514
BcoDI	GTCTC	4 cut(s)	117, 261, 539, 803
BfaI	CTAG	1 cut(s)	898
BfmI	CTRYAG	1 cut(s)	697
BglII	AGATCT	1 cut(s)	348
BisI	GCNGC	3 cut(s)	70, 241, 508
BlpI	GCTNAGC	1 cut(s)	433
BlsI	GCNGC	3 cut(s)	71, 242, 509
Bme1390I	CCNGG	2 cut(s)	420, 541
BmeT110I	CYCGRG	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	745
BmrFI	CCNGG	2 cut(s)	420, 541
BmsI	GCATC	2 cut(s)	329, 555
BpmI	CTGGAG	2 cut(s)	725, 858
Bpu1102I	GCTNAGC	1 cut(s)	433
BsaAI	YACGTR	1 cut(s)	761
BsaI	GGTCTC	1 cut(s)	803
BsaJI	CCNNGG	4 cut(s)	418, 539, 540, 749
BsaWI	WCCGGW	1 cut(s)	869
BsaXI	ACNNNNNCTCC	2 cut(s)	745, 775
Bsc4I	CCNNNNNNNGG	5 cut(s)	39, 419, 540, 664, 775
Bse1I	ACTGG	3 cut(s)	638, 708, 841
Bse3DI	GCAATG	4 cut(s)	149, 630, 645, 676
BseBI	CCWGG	2 cut(s)	420, 541
BseDI	CCNNGG	4 cut(s)	418, 539, 540, 749
BseGI	GGATG	2 cut(s)	13, 344
BseLI	CCNNNNNNNGG	5 cut(s)	39, 419, 540, 664, 775
BseMI	GCAATG	4 cut(s)	149, 630, 645, 676
BseMII	CTCAG	2 cut(s)	417, 447
BseNI	ACTGG	3 cut(s)	638, 708, 841
BseSI	GKGCMC	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	227, 519
BseYI	CCCAGC	1 cut(s)	625
BsgI	GTGCAG	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	2 cut(s)	98, 887
BsiHKAI	GWGCWC	4 cut(s)	212, 434, 718, 896
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	870
BslI	CCNNNNNNNGG	5 cut(s)	39, 419, 540, 664, 775
BsmAI	GTCTC	4 cut(s)	117, 261, 539, 803
BsnI	GGCC	2 cut(s)	98, 887
Bso31I	GGTCTC	1 cut(s)	803
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	5 cut(s)	201, 212, 434, 718, 896
Bsp143I	GATC	5 cut(s)	42, 348, 422, 478, 514
Bsp1720I	GCTNAGC	1 cut(s)	433
BspACI	CCGC	5 cut(s)	67, 70, 102, 299, 674
BspANI	GGCC	2 cut(s)	98, 887
BspCNI	CTCAG	2 cut(s)	418, 446
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	1 cut(s)	745
BspPI	GGATC	2 cut(s)	50, 430
BspTNI	GGTCTC	1 cut(s)	803
BsrDI	GCAATG	4 cut(s)	149, 630, 645, 676
BsrI	ACTGG	3 cut(s)	638, 708, 841
BssECI	CCNNGG	4 cut(s)	418, 539, 540, 749
BssMI	GATC	5 cut(s)	42, 348, 422, 478, 514
Bst2UI	CCWGG	2 cut(s)	420, 541
Bst4CI	ACNGT	3 cut(s)	86, 584, 797
BstAPI	GCANNNNNTGC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	761
BstC8I	GCNNGC	2 cut(s)	505, 605
BstDEI	CTNAG	3 cut(s)	384, 426, 433
BstEII	GGTNACC	1 cut(s)	865
BstF5I	GGATG	2 cut(s)	13, 344
BstFNI	CGCG	1 cut(s)	299
BstKTI	GATC	5 cut(s)	45, 351, 425, 481, 517
BstMAI	GTCTC	4 cut(s)	117, 261, 539, 803
BstMBI	GATC	5 cut(s)	42, 348, 422, 478, 514
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 216, 327, 680
BstNI	CCWGG	2 cut(s)	420, 541
BstNSI	RCATGY	1 cut(s)	507
BstPI	GGTNACC	1 cut(s)	865
BstSCI	CCNGG	2 cut(s)	418, 539
BstSFI	CTRYAG	1 cut(s)	697
BstSLI	GKGCMC	1 cut(s)	201
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	227, 519
BstX2I	RGATCY	3 cut(s)	42, 348, 422
BstYI	RGATCY	3 cut(s)	42, 348, 422
BsuRI	GGCC	2 cut(s)	98, 887
BtsCI	GGATG	2 cut(s)	13, 344
BtsIMutI	CAGTG	3 cut(s)	191, 305, 834
Cac8I	GCNNGC	2 cut(s)	505, 605
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	8 cut(s)	131, 343, 377, 504, 664, 719, 791, 817
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	3 cut(s)	384, 426, 433
DpnI	GATC	5 cut(s)	44, 350, 424, 480, 516
DpnII	GATC	5 cut(s)	42, 348, 422, 478, 514
DraIII	CACNNNGTG	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	803
Eco57I	CTGAAG	2 cut(s)	379, 676
Eco88I	CYCGRG	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	865
EcoO65I	GGTNACC	1 cut(s)	865
EcoRII	CCWGG	2 cut(s)	418, 539
EcoT22I	ATGCAT	2 cut(s)	344, 505
FaeI	CATG	8 cut(s)	134, 346, 380, 507, 667, 722, 794, 820
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	8 cut(s)	130, 342, 376, 503, 663, 718, 790, 816
FbaI	TGATCA	2 cut(s)	478, 514
Fnu4HI	GCNGC	3 cut(s)	70, 241, 508
FokI	GGATG	2 cut(s)	20, 351
Fsp4HI	GCNGC	3 cut(s)	70, 241, 508
FspBI	CTAG	1 cut(s)	898
GluI	GCNGC	3 cut(s)	70, 241, 508
GsaI	CCCAGC	1 cut(s)	629
GsuI	CTGGAG	2 cut(s)	725, 858
HaeIII	GGCC	2 cut(s)	98, 887
HapII	CCGG	1 cut(s)	870
Hin1II	CATG	8 cut(s)	134, 346, 380, 507, 667, 722, 794, 820
HincII	GTYRAC	2 cut(s)	30, 463
HindII	GTYRAC	2 cut(s)	30, 463
HindIII	AAGCTT	1 cut(s)	857
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	870
HphI	GGTGA	3 cut(s)	56, 71, 859
Hpy166II	GTNNAC	4 cut(s)	30, 463, 534, 643
Hpy188I	TCNGA	6 cut(s)	275, 398, 427, 471, 753, 774
Hpy8I	GTNNAC	4 cut(s)	30, 463, 534, 643
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	7 cut(s)	628, 700, 717, 734, 769, 841, 877
HpyCH4III	ACNGT	3 cut(s)	86, 584, 797
HpyCH4IV	ACGT	1 cut(s)	760
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 216, 327, 680
HpyF3I	CTNAG	3 cut(s)	384, 426, 433
HpySE526I	ACGT	1 cut(s)	760
Hsp92II	CATG	8 cut(s)	134, 346, 380, 507, 667, 722, 794, 820
Ksp22I	TGATCA	2 cut(s)	478, 514
Kzo9I	GATC	5 cut(s)	42, 348, 422, 478, 514
LmnI	GCTCC	3 cut(s)	215, 713, 753
Lsp1109I	GCAGC	2 cut(s)	227, 519
LweI	GCATC	2 cut(s)	329, 555
MaeI	CTAG	1 cut(s)	898
MaeII	ACGT	1 cut(s)	760
MaeIII	GTNAC	6 cut(s)	77, 303, 389, 584, 812, 865
MalI	GATC	5 cut(s)	44, 350, 424, 480, 516
MboI	GATC	5 cut(s)	42, 348, 422, 478, 514
MfeI	CAATTG	1 cut(s)	406
MflI	RGATCY	3 cut(s)	42, 348, 422
MhlI	GDGCHC	5 cut(s)	201, 212, 434, 718, 896
MluCI	AATT	1 cut(s)	406
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	691
MnlI	CCTC	5 cut(s)	109, 137, 373, 700, 759
Mph1103I	ATGCAT	2 cut(s)	344, 505
MroXI	GAANNNNTTC	1 cut(s)	851
MseI	TTAA	3 cut(s)	372, 528, 579
MslI	CAYNNNNRTG	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	625
MspI	CCGG	1 cut(s)	870
MspR9I	CCNGG	2 cut(s)	420, 541
MunI	CAATTG	1 cut(s)	406
MvaI	CCWGG	2 cut(s)	420, 541
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	4 cut(s)	153, 216, 327, 680
NdeII	GATC	5 cut(s)	42, 348, 422, 478, 514
NlaIII	CATG	8 cut(s)	134, 346, 380, 507, 667, 722, 794, 820
NlaIV	GGNNCC	1 cut(s)	745
NmuCI	GTSAC	4 cut(s)	77, 303, 389, 865
NsiI	ATGCAT	2 cut(s)	344, 505
NspI	RCATGY	1 cut(s)	507
PaeI	GCATGC	1 cut(s)	507
PasI	CCCWGGG	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	2 cut(s)	82, 757
PdmI	GAANNNNTTC	1 cut(s)	851
PflMI	CCANNNNNTGG	1 cut(s)	540
PkrI	GCNGC	3 cut(s)	71, 242, 509
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	761
Psp6I	CCWGG	2 cut(s)	418, 539
PspEI	GGTNACC	1 cut(s)	865
PspFI	CCCAGC	1 cut(s)	625
PspGI	CCWGG	2 cut(s)	418, 539
PspN4I	GGNNCC	1 cut(s)	745
PsuI	RGATCY	3 cut(s)	42, 348, 422
PvuII	CAGCTG	1 cut(s)	625
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	522
SaqAI	TTAA	3 cut(s)	372, 528, 579
SatI	GCNGC	3 cut(s)	70, 241, 508
Sau3AI	GATC	5 cut(s)	42, 348, 422, 478, 514
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	2 cut(s)	420, 541
SduI	GDGCHC	5 cut(s)	201, 212, 434, 718, 896
SfaNI	GCATC	2 cut(s)	329, 555
SfcI	CTRYAG	1 cut(s)	697
SmiMI	CAYNNNNRTG	1 cut(s)	522
SphI	GCATGC	1 cut(s)	507
Sse9I	AATT	1 cut(s)	406
SsiI	CCGC	5 cut(s)	67, 70, 102, 299, 674
SspMI	CTAG	1 cut(s)	898
StyD4I	CCNGG	2 cut(s)	418, 539
TaaI	ACNGT	3 cut(s)	86, 584, 797
TaiI	ACGT	1 cut(s)	763
TaqI	TCGA	1 cut(s)	224
TasI	AATT	1 cut(s)	406
TauI	GCSGC	1 cut(s)	72
Tru1I	TTAA	3 cut(s)	372, 528, 579
Tru9I	TTAA	3 cut(s)	372, 528, 579
TscAI	CASTG	3 cut(s)	191, 312, 841
TseFI	GTSAC	4 cut(s)	77, 303, 389, 865
TseI	GCWGC	2 cut(s)	240, 507
Tsp45I	GTSAC	4 cut(s)	77, 303, 389, 865
TspDTI	ATGAA	4 cut(s)	81, 147, 570, 652
TspGWI	ACGGA	1 cut(s)	647
TspRI	CASTG	3 cut(s)	191, 312, 841
Van91I	CCANNNNNTGG	1 cut(s)	540
XceI	RCATGY	1 cut(s)	507
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XmnI	GAANNNNTTC	1 cut(s)	851
XspI	CTAG	1 cut(s)	898
Zsp2I	ATGCAT	2 cut(s)	344, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.