Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009760

Physical Location & Seq

Genomic Coordinates Reverse (-)

2898306 .. 2901289

Gene Structure 2984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCCTGCAGTGCATGAGTTATTAAGGCTTTTAGCAATGGAGGATGATGGTGTGGAATGTTTGTCATCCTGTGATGAGATCTGTCAGGAACACATTTATCACCGCCGCCTCTGCCGCCGCCGTCGTCTCCACCGTCTTTCATTGGCCTCTGCCGGTAAGTCTCGGGCTAAAAACCTCCATGAACTTCTGCAATGCCCTGTCTGCACAAACTCTATGTACCCACCAATCAACCAGTGCCTAAACGGGCACACTCTGTGTTCCATTTGCAAATCGAAAGTGAAGAACTGCTGCCCAACTTGTAGAGAAGAACTTGGAGACATCAGATGTCTGGCATTAGAGAAAGTCGCCGAGTCACTGGAACTTCCTTGCAAGTATGGCCCTTTGGGATGCTTAGAGATGTTTCCTTACTACAAGAAAGTTAAGCATGAGGCTAAATGTGACTTCAGACCATATAATTGCCCCTACCCTGGATCTGAGTGCTCAGCAATTGGGGATATTGCTTTTCTGGTTGACCATCTCATAGTTGATCACAAGGTTGATATGCACAATGGATGCAGCTTTGATCATCTTTATGTTAAGTCTACTCCCCGGGAGACAGAAAATGCAGCCAAGATGCTTAAGGTATTCAACTGTTACAGCCATTACTTCTGCCTGCATTTTGAAGCCTTCCAACTTGGCATTGCACCAGTTTACATTGCATTTCTCCGTTTCATGGGCAATGCGGTCGAAGCACGAACCTTTAGCTACAGACTTGAAGTCGGAGCACATGGAAGGAAACTCATATGGGAAGGAACCCCTCGAAGCATACGTGAGAGCCATCAGAAGGTAAGGGACAGCCATGATGGTCTCATAATCCAGCGAAACATGGCACTCTTTTTCTCCACTGGAGAAAGGAAGGAGCTCAAGCTTCGGGTCACCGGACGGATATGGAAGGCTAAGAGCACTTTGAGCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

319

Amino Acids

36.42

Weight (kDa)

8.73

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	65 - 100	5.2e-12	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	114 - 189	9.7e-29	Sina, zinc finger
Sina_TRAF	PF03145	209 - 306	4.1e-32	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27880 AT5G53360 AT5G53360
fragaria_vesca	FvH4_4g04610 FvH4_5g04860
malus_domestica	MD06G1109400.v1.1 MD14G1130400.v1.1
prunus_persica	Prupe.5G122400_v2.0.a1
pyrus_communis	pycom06g10290
rosa_chinensis	RchiOBHm_Chr7g0194231
rosa_laevigata	RLG00000004208
rosa_multiflora	Rmu_sc0000901.1_g000003 Rmu_sc0009433.1_g000016
rosa_roxburghii	Rroxscaffold_3G00261480
rosa_rugosa	Rorug07G0014500 Rorug07G0014600
rosa_samantha	Rh7AG141900 Rh7BG142300 Rh7CG146000 Rh7DG143300
rosa_wichuraiana	Rw7G012130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	581
AciI	CCGC	5 cut(s)	103, 106, 115, 118, 722
AclWI	GGATC	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	427
AdeI	CACNNNGTG	1 cut(s)	255
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	3 cut(s)	467, 712, 823
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	628, 662, 755
AhdI	GACNNNNNGTC	1 cut(s)	755
AjnI	CCWGG	1 cut(s)	466
AluBI	AGCT	4 cut(s)	558, 744, 901, 907
AluI	AGCT	4 cut(s)	558, 744, 901, 907
Alw21I	GWGCWC	5 cut(s)	482, 766, 903, 944, 953
Alw26I	GTCTC	5 cut(s)	131, 165, 309, 587, 851
AlwI	GGATC	1 cut(s)	478
Ama87I	CYCGRG	2 cut(s)	162, 588
AoxI	GGCC	2 cut(s)	144, 376
ApeKI	GCWGC	3 cut(s)	288, 555, 605
AspS9I	GGNCC	1 cut(s)	377
AsuC2I	CCSGG	2 cut(s)	589, 590
AsuHPI	GGTGA	2 cut(s)	92, 907
AvaI	CYCGRG	2 cut(s)	162, 588
BaeGI	GKGCMC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	903
Bbv12I	GWGCWC	5 cut(s)	482, 766, 903, 944, 953
BbvI	GCAGC	3 cut(s)	275, 567, 617
BccI	CCATC	4 cut(s)	41, 522, 825, 836
BceAI	ACGGC	1 cut(s)	105
BcgI	CGANNNNNNTGC	2 cut(s)	706, 740
BciT130I	CCWGG	1 cut(s)	468
BclI	TGATCA	2 cut(s)	526, 562
BcnI	CCSGG	2 cut(s)	589, 590
BcoDI	GTCTC	5 cut(s)	131, 165, 309, 587, 851
BfmI	CTRYAG	2 cut(s)	6, 745
BfrI	CTTAAG	1 cut(s)	617
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	6 cut(s)	106, 115, 118, 289, 556, 606
BlpI	GCTNAGC	1 cut(s)	481
BlsI	GCNGC	6 cut(s)	107, 116, 119, 290, 557, 607
Bme1390I	CCNGG	3 cut(s)	468, 589, 590
BmeRI	GACNNNNNGTC	1 cut(s)	755
BmeT110I	CYCGRG	2 cut(s)	162, 588
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	793
BmrFI	CCNGG	3 cut(s)	468, 589, 590
BmsI	GCATC	3 cut(s)	377, 542, 603
BpmI	CTGGAG	1 cut(s)	906
Bpu1102I	GCTNAGC	1 cut(s)	481
BpuEI	CTTGAG	1 cut(s)	887
BpuMI	CCSGG	2 cut(s)	589, 590
BsaAI	YACGTR	1 cut(s)	809
BsaI	GGTCTC	1 cut(s)	851
BsaJI	CCNNGG	3 cut(s)	466, 587, 588
BsaWI	WCCGGW	1 cut(s)	917
Bsc4I	CCNNNNNNNGG	3 cut(s)	467, 712, 823
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	4 cut(s)	232, 360, 686, 889
Bse3DI	GCAATG	5 cut(s)	42, 197, 678, 693, 724
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	3 cut(s)	466, 587, 588
BseGI	GGATG	4 cut(s)	49, 65, 392, 557
BseLI	CCNNNNNNNGG	3 cut(s)	467, 712, 823
BseMI	GCAATG	5 cut(s)	42, 197, 678, 693, 724
BseMII	CTCAG	2 cut(s)	465, 495
BseNI	ACTGG	4 cut(s)	232, 360, 686, 889
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	3 cut(s)	275, 567, 617
BsgI	GTGCAG	1 cut(s)	187
Bsh1285I	CGRYCG	1 cut(s)	726
BshFI	GGCC	2 cut(s)	146, 378
BsiEI	CGRYCG	1 cut(s)	726
BsiHKAI	GWGCWC	5 cut(s)	482, 766, 903, 944, 953
BsiHKCI	CYCGRG	2 cut(s)	162, 588
BsiSI	CCGG	3 cut(s)	153, 589, 918
BslFI	GGGAC	1 cut(s)	845
BslI	CCNNNNNNNGG	3 cut(s)	467, 712, 823
BsmAI	GTCTC	5 cut(s)	131, 165, 309, 587, 851
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	845
BsnI	GGCC	2 cut(s)	146, 378
Bso31I	GGTCTC	1 cut(s)	851
BsoBI	CYCGRG	2 cut(s)	162, 588
Bsp1286I	GDGCHC	6 cut(s)	249, 482, 766, 903, 944, 953
Bsp143I	GATC	4 cut(s)	78, 470, 526, 562
Bsp1720I	GCTNAGC	1 cut(s)	481
BspACI	CCGC	5 cut(s)	103, 106, 115, 118, 722
BspANI	GGCC	2 cut(s)	146, 378
BspCNI	CTCAG	2 cut(s)	466, 494
BspLI	GGNNCC	1 cut(s)	793
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	1 cut(s)	478
BspTI	CTTAAG	1 cut(s)	617
BspTNI	GGTCTC	1 cut(s)	851
BsrDI	GCAATG	5 cut(s)	42, 197, 678, 693, 724
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	4 cut(s)	232, 360, 686, 889
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	466, 587, 588
BssMI	GATC	4 cut(s)	78, 470, 526, 562
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	2 cut(s)	134, 632
BstAFI	CTTAAG	1 cut(s)	617
BstBAI	YACGTR	1 cut(s)	809
BstC8I	GCNNGC	2 cut(s)	6, 653
BstDEI	CTNAG	4 cut(s)	391, 474, 481, 936
BstEII	GGTNACC	1 cut(s)	913
BstF5I	GGATG	4 cut(s)	49, 65, 392, 557
BstKTI	GATC	4 cut(s)	81, 473, 529, 565
BstMAI	GTCTC	5 cut(s)	131, 165, 309, 587, 851
BstMBI	GATC	4 cut(s)	78, 470, 526, 562
BstMCI	CGRYCG	1 cut(s)	726
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 111, 114, 201, 375, 728, 948
BstNI	CCWGG	1 cut(s)	468
BstPI	GGTNACC	1 cut(s)	913
BstSCI	CCNGG	3 cut(s)	466, 587, 588
BstSFI	CTRYAG	2 cut(s)	6, 745
BstSLI	GKGCMC	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	275, 567, 617
BstX2I	RGATCY	2 cut(s)	78, 470
BstYI	RGATCY	2 cut(s)	78, 470
BsuRI	GGCC	2 cut(s)	146, 378
BtsCI	GGATG	4 cut(s)	49, 65, 392, 557
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	4 cut(s)	15, 239, 353, 882
Cac8I	GCNNGC	2 cut(s)	6, 653
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	377
Cfr9I	CCCGGG	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	7 cut(s)	14, 179, 425, 712, 767, 839, 865
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	4 cut(s)	391, 474, 481, 936
DpnI	GATC	4 cut(s)	80, 472, 528, 564
DpnII	GATC	4 cut(s)	78, 470, 526, 562
DraIII	CACNNNGTG	1 cut(s)	255
DriI	GACNNNNNGTC	1 cut(s)	755
Eam1105I	GACNNNNNGTC	1 cut(s)	755
Ecl136II	GAGCTC	1 cut(s)	901
Eco24I	GRGCYC	1 cut(s)	903
Eco31I	GGTCTC	1 cut(s)	851
Eco53kI	GAGCTC	1 cut(s)	901
Eco57I	CTGAAG	1 cut(s)	427
Eco88I	CYCGRG	2 cut(s)	162, 588
Eco91I	GGTNACC	1 cut(s)	913
EcoICRI	GAGCTC	1 cut(s)	901
EcoO65I	GGTNACC	1 cut(s)	913
EcoRII	CCWGG	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	903
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	7 cut(s)	17, 182, 428, 715, 770, 842, 868
FaqI	GGGAC	1 cut(s)	845
FatI	CATG	7 cut(s)	13, 178, 424, 711, 766, 838, 864
FauNDI	CATATG	1 cut(s)	782
FbaI	TGATCA	2 cut(s)	526, 562
FblI	GTMKAC	1 cut(s)	581
Fnu4HI	GCNGC	6 cut(s)	106, 115, 118, 289, 556, 606
FokI	GGATG	4 cut(s)	52, 56, 399, 564
FriOI	GRGCYC	1 cut(s)	903
Fsp4HI	GCNGC	6 cut(s)	106, 115, 118, 289, 556, 606
GluI	GCNGC	6 cut(s)	106, 115, 118, 289, 556, 606
GsuI	CTGGAG	1 cut(s)	906
HaeIII	GGCC	2 cut(s)	146, 378
HapII	CCGG	3 cut(s)	153, 589, 918
Hin1II	CATG	7 cut(s)	17, 182, 428, 715, 770, 842, 868
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	905
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	3 cut(s)	153, 589, 918
HphI	GGTGA	2 cut(s)	92, 907
Hpy166II	GTNNAC	3 cut(s)	511, 582, 691
Hpy188I	TCNGA	5 cut(s)	323, 446, 475, 761, 822
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	3 cut(s)	511, 582, 691
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	6 cut(s)	676, 765, 782, 817, 889, 925
HpyCH4III	ACNGT	2 cut(s)	134, 632
HpyCH4IV	ACGT	1 cut(s)	808
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 111, 114, 201, 375, 728, 948
HpyF3I	CTNAG	4 cut(s)	391, 474, 481, 936
HpySE526I	ACGT	1 cut(s)	808
Hsp92II	CATG	7 cut(s)	17, 182, 428, 715, 770, 842, 868
Ksp22I	TGATCA	2 cut(s)	526, 562
Kzo9I	GATC	4 cut(s)	78, 470, 526, 562
LmnI	GCTCC	2 cut(s)	761, 898
Lsp1109I	GCAGC	3 cut(s)	275, 567, 617
LweI	GCATC	3 cut(s)	377, 542, 603
MaeII	ACGT	1 cut(s)	808
MaeIII	GTNAC	4 cut(s)	351, 437, 632, 913
MalI	GATC	4 cut(s)	80, 472, 528, 564
MboI	GATC	4 cut(s)	78, 470, 526, 562
MboII	GAAGA	2 cut(s)	292, 317
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	2 cut(s)	78, 470
MhlI	GDGCHC	6 cut(s)	249, 482, 766, 903, 944, 953
MluCI	AATT	2 cut(s)	454, 486
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	2 cut(s)	694, 739
MnlI	CCTC	6 cut(s)	34, 119, 157, 185, 421, 807
MseI	TTAA	4 cut(s)	23, 420, 576, 618
MslI	CAYNNNNRTG	1 cut(s)	570
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	3 cut(s)	153, 589, 918
MspR9I	CCNGG	3 cut(s)	468, 589, 590
MunI	CAATTG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	7 cut(s)	10, 111, 114, 201, 375, 728, 948
NciI	CCSGG	2 cut(s)	589, 590
NdeI	CATATG	1 cut(s)	782
NdeII	GATC	4 cut(s)	78, 470, 526, 562
NlaIII	CATG	7 cut(s)	17, 182, 428, 715, 770, 842, 868
NlaIV	GGNNCC	1 cut(s)	793
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	3 cut(s)	351, 437, 913
PcsI	WCGNNNNNNNCGW	2 cut(s)	130, 805
PkrI	GCNGC	6 cut(s)	107, 116, 119, 290, 557, 607
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	809
Psp124BI	GAGCTC	1 cut(s)	903
Psp6I	CCWGG	1 cut(s)	466
PspEI	GGTNACC	1 cut(s)	913
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	793
PspPI	GGNCC	1 cut(s)	377
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	2 cut(s)	78, 470
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	570
SacI	GAGCTC	1 cut(s)	903
SaqAI	TTAA	4 cut(s)	23, 420, 576, 618
SatI	GCNGC	6 cut(s)	106, 115, 118, 289, 556, 606
Sau3AI	GATC	4 cut(s)	78, 470, 526, 562
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	3 cut(s)	468, 589, 590
SduI	GDGCHC	6 cut(s)	249, 482, 766, 903, 944, 953
SfaNI	GCATC	3 cut(s)	377, 542, 603
SfcI	CTRYAG	2 cut(s)	6, 745
SmaI	CCCGGG	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	617, 902
SmoI	CTYRAG	2 cut(s)	617, 902
Sse9I	AATT	2 cut(s)	454, 486
SsiI	CCGC	5 cut(s)	103, 106, 115, 118, 722
SstI	GAGCTC	1 cut(s)	903
StyD4I	CCNGG	3 cut(s)	466, 587, 588
TaaI	ACNGT	2 cut(s)	134, 632
TaiI	ACGT	1 cut(s)	811
TaqI	TCGA	3 cut(s)	272, 726, 799
TasI	AATT	2 cut(s)	454, 486
TauI	GCSGC	3 cut(s)	108, 117, 120
Tru1I	TTAA	4 cut(s)	23, 420, 576, 618
Tru9I	TTAA	4 cut(s)	23, 420, 576, 618
TscAI	CASTG	4 cut(s)	15, 239, 360, 889
TseFI	GTSAC	3 cut(s)	351, 437, 913
TseI	GCWGC	3 cut(s)	288, 555, 605
Tsp45I	GTSAC	3 cut(s)	351, 437, 913
TspDTI	ATGAA	3 cut(s)	129, 195, 700
TspGWI	ACGGA	2 cut(s)	695, 937
TspMI	CCCGGG	1 cut(s)	588
TspRI	CASTG	4 cut(s)	15, 239, 360, 889
Vha464I	CTTAAG	1 cut(s)	617
XmaI	CCCGGG	1 cut(s)	588
XmiI	GTMKAC	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.