Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009760

Physical Location & Seq

Genomic Coordinates Forward (+)

11891541 .. 11893133

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG146000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTACCCACCAATCAATCAGTGCCTAAATGGGCACACTCTGTGCTCCATTTGCAAATCGAAAGTAAAGAACTGCTGCCCAACTTGTAAAGAACAACTTGGAGACATCAGATGCCTGGCATTAGAGAAAGTCGCGGAGTCACTGAAACTTCCTTGCAAGTATCGCTCTTTGGGATGCATGGAGATCTTTCTTTACGACAAGAAAGTTAAGCATGAGGCTAAGTGTGACTTCAGACCATACAATTGCCCCTACCCTGGATCTGAGTGCTCAGCAGTTGGGGATATTGCTTTTCTGGTTGACCATCTGATAGTTGATCACAAGGTTGATATGCTCAGTGCATGCAGCTTTGATCATCTTTATGTTAAGTCCACTCCCTGGGAGACAGAAAATGAAGCCAAGATGCTTATGGTATTTAACTGTTACAGCCATTACTTCTGCCTGCATTTTGAAGCCTTCCAGCTGGGCATTGCACCAGTTTACATTGCATTTCTCCGTTTCATGGGCAATGCGGTTGAAGCCCGAACCTTCAGCTACAGACTGGAGGTTGGAGCACATGGAAGGAAACTAATATGGGAAGGAACCCCTCGGAGCATACGTGAGAGCCATCAGAAGGTAAGGGATAGCCATGACGGTCTCATAATCCAGCGTAACATGGCACTCTTTTTTTCCACTGGAGAAAGGAAGGAGTTCAAGCTTCGGGTCACCGGACAGATATGGAAGGCCAAGAGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

244

Amino Acids

28.03

Weight (kDa)

8.66

Isoelectric Point (pI)

27.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	1 - 29	8.6e-09	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	43 - 118	5.3e-28	Sina, zinc finger
Sina_TRAF	PF03145	138 - 235	1.5e-31	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27880 AT5G53360 AT5G53360
fragaria_vesca	FvH4_4g04610 FvH4_5g04860
malus_domestica	MD06G1109400.v1.1 MD14G1130400.v1.1
prunus_persica	Prupe.5G122400_v2.0.a1
pyrus_communis	pycom06g10290
rosa_chinensis	RchiOBHm_Chr7g0194231
rosa_laevigata	RLG00000004208
rosa_multiflora	Rmu_sc0000901.1_g000003 Rmu_sc0009433.1_g000016
rosa_roxburghii	Rroxscaffold_3G00261480
rosa_rugosa	Rorug07G0014500 Rorug07G0014600
rosa_samantha	Rh7AG141900 Rh7BG142300 Rh7CG146000 Rh7DG143300
rosa_wichuraiana	Rw7G012130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	375
AccII	CGCG	1 cut(s)	134
AciI	CCGC	2 cut(s)	134, 509
AclWI	GGATC	1 cut(s)	265
AcuI	CTGAAG	2 cut(s)	214, 511
AdeI	CACNNNGTG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	4 cut(s)	254, 375, 499, 610
AgsI	TTSAA	3 cut(s)	449, 515, 691
AjnI	CCWGG	3 cut(s)	114, 253, 374
AluBI	AGCT	4 cut(s)	345, 460, 531, 694
AluI	AGCT	4 cut(s)	345, 460, 531, 694
Alw21I	GWGCWC	4 cut(s)	47, 269, 553, 731
Alw26I	GTCTC	3 cut(s)	96, 374, 638
AlwI	GGATC	1 cut(s)	265
AoxI	GGCC	1 cut(s)	720
ApeKI	GCWGC	2 cut(s)	75, 342
Asp700I	GAANNNNTTC	1 cut(s)	686
AsuHPI	GGTGA	1 cut(s)	694
BaeGI	GKGCMC	1 cut(s)	36
Bbv12I	GWGCWC	4 cut(s)	47, 269, 553, 731
BbvI	GCAGC	2 cut(s)	62, 354
BccI	CCATC	2 cut(s)	309, 612
BciT130I	CCWGG	3 cut(s)	116, 255, 376
BclI	TGATCA	2 cut(s)	313, 349
BcoDI	GTCTC	3 cut(s)	96, 374, 638
BfaI	CTAG	1 cut(s)	733
BfmI	CTRYAG	1 cut(s)	532
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	2 cut(s)	76, 343
BlpI	GCTNAGC	1 cut(s)	268
BlsI	GCNGC	2 cut(s)	77, 344
Bme1390I	CCNGG	3 cut(s)	116, 255, 376
BmiI	GGNNCC	1 cut(s)	580
BmrFI	CCNGG	3 cut(s)	116, 255, 376
BmsI	GCATC	3 cut(s)	101, 164, 390
BpmI	CTGGAG	2 cut(s)	560, 693
Bpu1102I	GCTNAGC	1 cut(s)	268
BsaAI	YACGTR	1 cut(s)	596
BsaI	GGTCTC	1 cut(s)	638
BsaJI	CCNNGG	4 cut(s)	253, 374, 375, 584
BsaWI	WCCGGW	1 cut(s)	704
BsaXI	ACNNNNNCTCC	2 cut(s)	580, 610
Bsc4I	CCNNNNNNNGG	4 cut(s)	254, 375, 499, 610
Bse1I	ACTGG	3 cut(s)	473, 543, 676
Bse3DI	GCAATG	3 cut(s)	465, 480, 511
BseBI	CCWGG	3 cut(s)	116, 255, 376
BseDI	CCNNGG	4 cut(s)	253, 374, 375, 584
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	4 cut(s)	254, 375, 499, 610
BseMI	GCAATG	3 cut(s)	465, 480, 511
BseMII	CTCAG	3 cut(s)	252, 282, 346
BseNI	ACTGG	3 cut(s)	473, 543, 676
BseSI	GKGCMC	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	62, 354
BseYI	CCCAGC	1 cut(s)	460
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	722
BsiHKAI	GWGCWC	4 cut(s)	47, 269, 553, 731
BsiSI	CCGG	1 cut(s)	705
BslI	CCNNNNNNNGG	4 cut(s)	254, 375, 499, 610
BsmAI	GTCTC	3 cut(s)	96, 374, 638
BsnI	GGCC	1 cut(s)	722
Bso31I	GGTCTC	1 cut(s)	638
Bsp1286I	GDGCHC	5 cut(s)	36, 47, 269, 553, 731
Bsp143I	GATC	4 cut(s)	183, 257, 313, 349
Bsp1720I	GCTNAGC	1 cut(s)	268
BspACI	CCGC	2 cut(s)	134, 509
BspANI	GGCC	1 cut(s)	722
BspCNI	CTCAG	3 cut(s)	253, 281, 345
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	580
BspPI	GGATC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	638
BsrDI	GCAATG	3 cut(s)	465, 480, 511
BsrI	ACTGG	3 cut(s)	473, 543, 676
BssECI	CCNNGG	4 cut(s)	253, 374, 375, 584
BssMI	GATC	4 cut(s)	183, 257, 313, 349
Bst2UI	CCWGG	3 cut(s)	116, 255, 376
Bst4CI	ACNGT	2 cut(s)	419, 632
BstBAI	YACGTR	1 cut(s)	596
BstC8I	GCNNGC	2 cut(s)	340, 440
BstDEI	CTNAG	4 cut(s)	219, 261, 268, 332
BstEII	GGTNACC	1 cut(s)	700
BstF5I	GGATG	1 cut(s)	179
BstFNI	CGCG	1 cut(s)	134
BstKTI	GATC	4 cut(s)	186, 260, 316, 352
BstMAI	GTCTC	3 cut(s)	96, 374, 638
BstMBI	GATC	4 cut(s)	183, 257, 313, 349
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 162, 515
BstNI	CCWGG	3 cut(s)	116, 255, 376
BstNSI	RCATGY	1 cut(s)	342
BstPI	GGTNACC	1 cut(s)	700
BstSCI	CCNGG	3 cut(s)	114, 253, 374
BstSFI	CTRYAG	1 cut(s)	532
BstSLI	GKGCMC	1 cut(s)	36
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	62, 354
BstX2I	RGATCY	2 cut(s)	183, 257
BstYI	RGATCY	2 cut(s)	183, 257
BsuRI	GGCC	1 cut(s)	722
BtsCI	GGATG	1 cut(s)	179
BtsIMutI	CAGTG	4 cut(s)	26, 140, 340, 669
Cac8I	GCNNGC	2 cut(s)	340, 440
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	7 cut(s)	178, 212, 339, 499, 554, 626, 652
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	4 cut(s)	219, 261, 268, 332
DpnI	GATC	4 cut(s)	185, 259, 315, 351
DpnII	GATC	4 cut(s)	183, 257, 313, 349
DraIII	CACNNNGTG	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	638
Eco57I	CTGAAG	2 cut(s)	214, 511
Eco91I	GGTNACC	1 cut(s)	700
EcoO65I	GGTNACC	1 cut(s)	700
EcoRII	CCWGG	3 cut(s)	114, 253, 374
EcoT22I	ATGCAT	1 cut(s)	179
FaeI	CATG	7 cut(s)	181, 215, 342, 502, 557, 629, 655
FalI	AAGNNNNNCTT	4 cut(s)	81, 113, 212, 244
FatI	CATG	7 cut(s)	177, 211, 338, 498, 553, 625, 651
FbaI	TGATCA	2 cut(s)	313, 349
Fnu4HI	GCNGC	2 cut(s)	76, 343
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	76, 343
FspBI	CTAG	1 cut(s)	733
GluI	GCNGC	2 cut(s)	76, 343
GsaI	CCCAGC	1 cut(s)	464
GsuI	CTGGAG	2 cut(s)	560, 693
HaeIII	GGCC	1 cut(s)	722
HapII	CCGG	1 cut(s)	705
Hin1II	CATG	7 cut(s)	181, 215, 342, 502, 557, 629, 655
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	705
HphI	GGTGA	1 cut(s)	694
Hpy166II	GTNNAC	3 cut(s)	298, 369, 478
Hpy188I	TCNGA	6 cut(s)	110, 233, 262, 306, 588, 609
Hpy8I	GTNNAC	3 cut(s)	298, 369, 478
HpyAV	CCTTC	7 cut(s)	463, 535, 552, 569, 604, 676, 712
HpyCH4III	ACNGT	2 cut(s)	419, 632
HpyCH4IV	ACGT	1 cut(s)	595
HpyCH4V	TGCA	8 cut(s)	54, 156, 177, 338, 342, 442, 470, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 162, 515
HpyF3I	CTNAG	4 cut(s)	219, 261, 268, 332
HpySE526I	ACGT	1 cut(s)	595
Hsp92II	CATG	7 cut(s)	181, 215, 342, 502, 557, 629, 655
Ksp22I	TGATCA	2 cut(s)	313, 349
Kzo9I	GATC	4 cut(s)	183, 257, 313, 349
LmnI	GCTCC	3 cut(s)	50, 548, 588
Lsp1109I	GCAGC	2 cut(s)	62, 354
LweI	GCATC	3 cut(s)	101, 164, 390
MaeI	CTAG	1 cut(s)	733
MaeII	ACGT	1 cut(s)	595
MaeIII	GTNAC	5 cut(s)	138, 224, 419, 647, 700
MalI	GATC	4 cut(s)	185, 259, 315, 351
MboI	GATC	4 cut(s)	183, 257, 313, 349
MfeI	CAATTG	1 cut(s)	241
MflI	RGATCY	2 cut(s)	183, 257
MhlI	GDGCHC	5 cut(s)	36, 47, 269, 553, 731
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	3 cut(s)	208, 535, 594
Mph1103I	ATGCAT	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	686
MseI	TTAA	3 cut(s)	207, 363, 414
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	460
MspI	CCGG	1 cut(s)	705
MspR9I	CCNGG	3 cut(s)	116, 255, 376
MunI	CAATTG	1 cut(s)	241
MvaI	CCWGG	3 cut(s)	116, 255, 376
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	51, 162, 515
NdeII	GATC	4 cut(s)	183, 257, 313, 349
NlaIII	CATG	7 cut(s)	181, 215, 342, 502, 557, 629, 655
NlaIV	GGNNCC	1 cut(s)	580
NmuCI	GTSAC	3 cut(s)	138, 224, 700
NsiI	ATGCAT	1 cut(s)	179
NspI	RCATGY	1 cut(s)	342
PaeI	GCATGC	1 cut(s)	342
PasI	CCCWGGG	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	1 cut(s)	592
PdmI	GAANNNNTTC	1 cut(s)	686
PflMI	CCANNNNNTGG	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	77, 344
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	596
Psp6I	CCWGG	3 cut(s)	114, 253, 374
PspEI	GGTNACC	1 cut(s)	700
PspFI	CCCAGC	1 cut(s)	460
PspGI	CCWGG	3 cut(s)	114, 253, 374
PspN4I	GGNNCC	1 cut(s)	580
PsuI	RGATCY	2 cut(s)	183, 257
PvuII	CAGCTG	1 cut(s)	460
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	207, 363, 414
SatI	GCNGC	2 cut(s)	76, 343
Sau3AI	GATC	4 cut(s)	183, 257, 313, 349
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	3 cut(s)	116, 255, 376
SduI	GDGCHC	5 cut(s)	36, 47, 269, 553, 731
SfaNI	GCATC	3 cut(s)	101, 164, 390
SfcI	CTRYAG	1 cut(s)	532
SmiMI	CAYNNNNRTG	1 cut(s)	357
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	2 cut(s)	134, 509
SspMI	CTAG	1 cut(s)	733
StyD4I	CCNGG	3 cut(s)	114, 253, 374
TaaI	ACNGT	2 cut(s)	419, 632
TaiI	ACGT	1 cut(s)	598
TaqI	TCGA	1 cut(s)	59
TasI	AATT	1 cut(s)	241
Tru1I	TTAA	3 cut(s)	207, 363, 414
Tru9I	TTAA	3 cut(s)	207, 363, 414
TscAI	CASTG	4 cut(s)	26, 147, 340, 676
TseFI	GTSAC	3 cut(s)	138, 224, 700
TseI	GCWGC	2 cut(s)	75, 342
Tsp45I	GTSAC	3 cut(s)	138, 224, 700
TspDTI	ATGAA	2 cut(s)	405, 487
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	4 cut(s)	26, 147, 340, 676
Van91I	CCANNNNNTGG	1 cut(s)	375
XceI	RCATGY	1 cut(s)	342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	686
XspI	CTAG	1 cut(s)	733
Zsp2I	ATGCAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.