Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005219

Physical Location & Seq

Genomic Coordinates Reverse (-)

1864329 .. 1866982

Gene Structure 2654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026281

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGACTTGGAGAGCATAGAGTGTGTTTCATCCTCAGATGGTCTTGATGAGGATGAGATCCATCAACACCTTCACAACCCACAACATCCTTCTCATCAACACCACCATGACTTTTCTTCTTCCAAGCCCAGAAATAATGTTACCAACAACGTCGGAATTCCGGGCCCCACCGCCATTGCTCCGGCCACCAGCGTTCATGAGTTGCTGGAATGTCCGGTGTGTACGAATTCAATGTACCCACCGATTCATCAGTGCCACAATGGACACACACTGTGTTCCACCTGTAAAACAAGGGTCCACAATCGCTGCCCCACTTGTAGACAGGAGCTTGGAGATATTAGGTGTTTAGCATTGGAGAAGGTGGCTGAGTCCTTGGAATTACCCTGCAAGTATTACTCCTTGGGATGCCCGGAAATATTTCCTTACTACAGCAAACTAAAGCATGAATCAGTGTGCAATTTCAGACCTTATAATTGCCCATATGCTGGATCCGAGTGCTCTGTTGTTGGGGATATCCCTTTCCTGGTTGCCCATCTTAGAGATGATCACAAAGTGGACATGCACACAGGATACACATTCAACCATCGCTATGTAAAGTCAAATCCCCGGGAAGTAGAGAATGCCACTTGGATGCTTACAGTCTTCCATTGTTTTGGTCAATACTTCTGCCTTCATTTTGAAGCCTTCCAGCTTGGCATGGCTCCTGTTTATATGGCTTTTCTACGTTTTATGGGTGATGAGAATGAGGCACGGAACTACAGCTACAGCCTCGAGGTTGGAGCAAATGGCAGGAAACTCATATGGGAGGGCACCCCAAGAAGTGTCCGTGATAGCCACCGGAAGGTAAGGGATAGCCATGACGGTCTCATTATTCAACGAAACATGGCTTTATTTTTCTCTGGAGGAGATAGGAAGGAGCTTAAGCTGAGAGTTACCGGGAGGATATGGAAGGAACAGCAAAATCCAGACGCTGGAGTGTGCATACCAAACTTATGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

334

Amino Acids

37.94

Weight (kDa)

6.5

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	71 - 106	4.4e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	120 - 195	6.1e-30	Sina, zinc finger
Sina_TRAF	PF03145	215 - 312	1.6e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53360
fragaria_vesca	FvH4_7g31590 FvH4_7g31590
malus_domestica	MD01G1218700.v1.1 MD07G1288600.v1.1
prunus_persica	Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1 Prupe.2G310100_v2.0.a1
pyrus_communis	pycom01g22860 pycom01g22870 pycom07g26120 pycom07g26130
rosa_chinensis	RchiOBHm_Chr1g0380621
rosa_laevigata	RLG00000026281
rosa_multiflora	Rmu_co8022042.1_g000001 Rmu_sc0004647.1_g000009 Rmu_sc0008604.1_g000001 Rmu_sc0021483.1_g000002 Rmu_ssc0000015.1_g000012
rosa_roxburghii	Rroxscaffold_4G00279130
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1AG447300 Rh1BG402800 Rh1CG417200 Rh1DG433100 Rh7CG247600 Rh7CG247700
rosa_wichuraiana	Rw1G038930 Rw7G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
AbsI	CCTCGAGG	1 cut(s)	770
AccB1I	GGYRCC	1 cut(s)	809
AccB7I	CCANNNNNTGG	2 cut(s)	485, 971
AccI	GTMKAC	1 cut(s)	319
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	3 cut(s)	52, 483, 496
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	156, 226
AdeI	CACNNNGTG	2 cut(s)	273, 553
AfaI	GTAC	2 cut(s)	223, 236
AfiI	CCNNNNNNNGG	4 cut(s)	485, 523, 841, 971
AflII	CTTAAG	1 cut(s)	920
AgsI	TTSAA	4 cut(s)	231, 580, 680, 875
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	6 cut(s)	328, 691, 762, 919, 925, 999
AluI	AGCT	6 cut(s)	328, 691, 762, 919, 925, 999
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	1 cut(s)	869
AlwI	GGATC	3 cut(s)	52, 483, 496
AlwNI	CAGNNNCTG	1 cut(s)	971
Ama87I	CYCGRG	2 cut(s)	606, 770
AoxI	GGCC	2 cut(s)	163, 183
ApaI	GGGCCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	2 cut(s)	156, 226
Asp700I	GAANNNNTTC	1 cut(s)	417
AspS9I	GGNCC	3 cut(s)	163, 164, 295
AsuC2I	CCSGG	5 cut(s)	162, 410, 607, 608, 937
AsuHPI	GGTGA	1 cut(s)	746
AvaI	CYCGRG	2 cut(s)	606, 770
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	2 cut(s)	167, 812
BamHI	GGATCC	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	809
BanII	GRGCYC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	4 cut(s)	32, 69, 540, 591
BciT130I	CCWGG	1 cut(s)	524
BciVI	GTATCC	1 cut(s)	563
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	5 cut(s)	162, 410, 607, 608, 937
BcoDI	GTCTC	1 cut(s)	869
BfmI	CTRYAG	3 cut(s)	427, 757, 763
BfrI	CTTAAG	1 cut(s)	920
BfuI	GTATCC	1 cut(s)	563
BisI	GCNGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	308
Bme1390I	CCNGG	6 cut(s)	162, 410, 524, 607, 608, 937
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	2 cut(s)	606, 770
BmgT120I	GGNCC	3 cut(s)	163, 164, 295
BmiI	GGNNCC	6 cut(s)	165, 166, 296, 490, 702, 811
BmrFI	CCNGG	6 cut(s)	162, 410, 524, 607, 608, 937
BmsI	GCATC	2 cut(s)	395, 621
BpiI	GAAGAC	1 cut(s)	634
BpmI	CTGGAG	2 cut(s)	921, 993
BpuMI	CCSGG	5 cut(s)	162, 410, 607, 608, 937
BsaI	GGTCTC	1 cut(s)	869
BsaJI	CCNNGG	4 cut(s)	372, 399, 605, 606
BsaWI	WCCGGW	2 cut(s)	214, 837
Bsc4I	CCNNNNNNNGG	4 cut(s)	485, 523, 841, 971
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	4 cut(s)	372, 399, 605, 606
BseGI	GGATG	5 cut(s)	29, 58, 85, 410, 636
BseLI	CCNNNNNNNGG	4 cut(s)	485, 523, 841, 971
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	3 cut(s)	48, 357, 917
BseRI	GAGGAG	1 cut(s)	918
BseSI	GKGCMC	2 cut(s)	167, 812
BseXI	GCAGC	1 cut(s)	293
BshFI	GGCC	2 cut(s)	165, 185
BshNI	GGYRCC	1 cut(s)	809
BsiHKAI	GWGCWC	1 cut(s)	500
BsiHKCI	CYCGRG	2 cut(s)	606, 770
BsiSI	CCGG	7 cut(s)	161, 182, 215, 410, 607, 838, 936
BslI	CCNNNNNNNGG	4 cut(s)	485, 523, 841, 971
BsmAI	GTCTC	1 cut(s)	869
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	2 cut(s)	165, 185
Bso31I	GGTCTC	1 cut(s)	869
BsoBI	CYCGRG	2 cut(s)	606, 770
Bsp120I	GGGCCC	1 cut(s)	163
Bsp1286I	GDGCHC	3 cut(s)	167, 500, 812
Bsp143I	GATC	3 cut(s)	57, 488, 544
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	2 cut(s)	165, 185
BspCNI	CTCAG	3 cut(s)	47, 358, 918
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	6 cut(s)	165, 166, 296, 490, 702, 811
BspPI	GGATC	3 cut(s)	52, 483, 496
BspT107I	GGYRCC	1 cut(s)	809
BspTI	CTTAAG	1 cut(s)	920
BspTNI	GGTCTC	1 cut(s)	869
BsrDI	GCAATG	1 cut(s)	174
BssECI	CCNNGG	4 cut(s)	372, 399, 605, 606
BssMI	GATC	3 cut(s)	57, 488, 544
BssT1I	CCWWGG	2 cut(s)	372, 399
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	3 cut(s)	273, 640, 863
BstAFI	CTTAAG	1 cut(s)	920
BstDEI	CTNAG	4 cut(s)	34, 366, 536, 926
BstF5I	GGATG	5 cut(s)	29, 58, 85, 410, 636
BstKTI	GATC	3 cut(s)	60, 491, 547
BstMAI	GTCTC	1 cut(s)	869
BstMBI	GATC	3 cut(s)	57, 488, 544
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	6 cut(s)	160, 408, 522, 605, 606, 935
BstSFI	CTRYAG	3 cut(s)	427, 757, 763
BstSLI	GKGCMC	2 cut(s)	167, 812
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	634
BstX2I	RGATCY	2 cut(s)	57, 488
BstXI	CCANNNNNNTGG	1 cut(s)	653
BstYI	RGATCY	2 cut(s)	57, 488
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	165, 185
BtgZI	GCGATG	1 cut(s)	569
BtsCI	GGATG	5 cut(s)	29, 58, 85, 410, 636
BtsIMutI	CAGTG	3 cut(s)	257, 269, 456
CaiI	CAGNNNCTG	1 cut(s)	971
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	3 cut(s)	163, 164, 295
Cfr9I	CCCGGG	1 cut(s)	606
CseI	GACGC	1 cut(s)	977
Csp6I	GTAC	2 cut(s)	222, 235
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	7 cut(s)	107, 197, 443, 559, 697, 857, 883
CviQI	GTAC	2 cut(s)	222, 235
DdeI	CTNAG	4 cut(s)	34, 366, 536, 926
DpnI	GATC	3 cut(s)	59, 490, 546
DpnII	GATC	3 cut(s)	57, 488, 544
DraIII	CACNNNGTG	2 cut(s)	273, 553
EaeI	YGGCCR	1 cut(s)	183
Eco130I	CCWWGG	2 cut(s)	372, 399
Eco24I	GRGCYC	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	869
Eco32I	GATATC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	295
Eco88I	CYCGRG	2 cut(s)	606, 770
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRI	GAATTC	2 cut(s)	156, 226
EcoRII	CCWGG	1 cut(s)	522
EcoRV	GATATC	1 cut(s)	514
EcoT14I	CCWWGG	2 cut(s)	372, 399
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	2 cut(s)	372, 399
FaeI	CATG	7 cut(s)	110, 200, 446, 562, 700, 860, 886
FatI	CATG	7 cut(s)	106, 196, 442, 558, 696, 856, 882
FauNDI	CATATG	2 cut(s)	481, 800
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	319
Fnu4HI	GCNGC	1 cut(s)	307
FokI	GGATG	5 cut(s)	16, 65, 72, 417, 643
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	307
GluI	GCNGC	1 cut(s)	307
GsuI	CTGGAG	2 cut(s)	921, 993
HaeIII	GGCC	2 cut(s)	165, 185
HapII	CCGG	7 cut(s)	161, 182, 215, 410, 607, 838, 936
HgaI	GACGC	1 cut(s)	977
Hin1II	CATG	7 cut(s)	110, 200, 446, 562, 700, 860, 886
HinfI	GANTC	3 cut(s)	244, 368, 446
HpaII	CCGG	7 cut(s)	161, 182, 215, 410, 607, 838, 936
HphI	GGTGA	1 cut(s)	746
Hpy166II	GTNNAC	4 cut(s)	222, 298, 320, 556
Hpy188I	TCNGA	4 cut(s)	37, 155, 464, 493
Hpy188III	TCNNGA	4 cut(s)	44, 197, 900, 965
Hpy8I	GTNNAC	4 cut(s)	222, 298, 320, 556
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	8 cut(s)	80, 99, 352, 680, 694, 835, 907, 943
HpyCH4III	ACNGT	3 cut(s)	273, 640, 863
HpyCH4IV	ACGT	2 cut(s)	150, 724
HpyCH4V	TGCA	4 cut(s)	387, 456, 562, 981
HpyF3I	CTNAG	4 cut(s)	34, 366, 536, 926
HpySE526I	ACGT	2 cut(s)	150, 724
Hsp92II	CATG	7 cut(s)	110, 200, 446, 562, 700, 860, 886
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	57, 488, 544
LmnI	GCTCC	5 cut(s)	184, 325, 706, 779, 916
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	2 cut(s)	395, 621
MaeII	ACGT	2 cut(s)	150, 724
MaeIII	GTNAC	2 cut(s)	139, 931
MalI	GATC	3 cut(s)	59, 490, 546
MboI	GATC	3 cut(s)	57, 488, 544
MboII	GAAGA	3 cut(s)	108, 111, 634
MflI	RGATCY	2 cut(s)	57, 488
MhlI	GDGCHC	3 cut(s)	167, 500, 812
MluCI	AATT	5 cut(s)	156, 226, 377, 457, 472
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	2 cut(s)	133, 757
MnlI	CCTC	8 cut(s)	43, 43, 739, 766, 779, 799, 896, 933
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	1 cut(s)	921
MslI	CAYNNNNRTG	3 cut(s)	105, 588, 629
MspCI	CTTAAG	1 cut(s)	920
MspI	CCGG	7 cut(s)	161, 182, 215, 410, 607, 838, 936
MspR9I	CCNGG	6 cut(s)	162, 410, 524, 607, 608, 937
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	1 cut(s)	524
NciI	CCSGG	5 cut(s)	162, 410, 607, 608, 937
NdeI	CATATG	2 cut(s)	481, 800
NdeII	GATC	3 cut(s)	57, 488, 544
NlaIII	CATG	7 cut(s)	110, 200, 446, 562, 700, 860, 886
NlaIV	GGNNCC	6 cut(s)	165, 166, 296, 490, 702, 811
NspI	RCATGY	1 cut(s)	562
PaeR7I	CTCGAG	1 cut(s)	770
PagI	TCATGA	1 cut(s)	196
PctI	GAATGC	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	244, 446
PflMI	CCANNNNNTGG	2 cut(s)	485, 971
PkrI	GCNGC	1 cut(s)	308
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PsiI	TTATAA	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	6 cut(s)	165, 166, 296, 490, 702, 811
PspOMI	GGGCCC	1 cut(s)	163
PspPI	GGNCC	3 cut(s)	163, 164, 295
PspXI	VCTCGAGB	1 cut(s)	770
PsrI	GAACNNNNNNTAC	2 cut(s)	746, 778
PstNI	CAGNNNCTG	1 cut(s)	971
PsuI	RGATCY	2 cut(s)	57, 488
RsaI	GTAC	2 cut(s)	223, 236
RsaNI	GTAC	2 cut(s)	222, 235
RseI	CAYNNNNRTG	3 cut(s)	105, 588, 629
SaqAI	TTAA	1 cut(s)	921
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	3 cut(s)	57, 488, 544
Sau96I	GGNCC	3 cut(s)	163, 164, 295
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	6 cut(s)	162, 410, 524, 607, 608, 937
SduI	GDGCHC	3 cut(s)	167, 500, 812
SfaNI	GCATC	2 cut(s)	395, 621
SfcI	CTRYAG	3 cut(s)	427, 757, 763
Sfr274I	CTCGAG	1 cut(s)	770
SinI	GGWCC	1 cut(s)	295
SlaI	CTCGAG	1 cut(s)	770
SmaI	CCCGGG	1 cut(s)	608
SmiMI	CAYNNNNRTG	3 cut(s)	105, 588, 629
SmlI	CTYRAG	2 cut(s)	770, 920
SmoI	CTYRAG	2 cut(s)	770, 920
Sse9I	AATT	5 cut(s)	156, 226, 377, 457, 472
SsiI	CCGC	1 cut(s)	171
SspI	AATATT	1 cut(s)	417
StyD4I	CCNGG	6 cut(s)	160, 408, 522, 605, 606, 935
StyI	CCWWGG	2 cut(s)	372, 399
TaaI	ACNGT	3 cut(s)	273, 640, 863
TaiI	ACGT	2 cut(s)	153, 727
TaqI	TCGA	1 cut(s)	771
TasI	AATT	5 cut(s)	156, 226, 377, 457, 472
TfiI	GAWTC	2 cut(s)	244, 446
Tru1I	TTAA	1 cut(s)	921
Tru9I	TTAA	1 cut(s)	921
TscAI	CASTG	3 cut(s)	257, 276, 456
TseI	GCWGC	1 cut(s)	306
TspDTI	ATGAA	5 cut(s)	18, 185, 236, 459, 662
TspGWI	ACGGA	2 cut(s)	766, 815
TspMI	CCCGGG	1 cut(s)	606
TspRI	CASTG	3 cut(s)	257, 276, 456
Van91I	CCANNNNNTGG	2 cut(s)	485, 971
Vha464I	CTTAAG	1 cut(s)	920
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	2 cut(s)	156, 226
XceI	RCATGY	1 cut(s)	562
XhoI	CTCGAG	1 cut(s)	770
XmaI	CCCGGG	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.