Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018545

Physical Location & Seq

Genomic Coordinates Reverse (-)

2021514 .. 2030436

Gene Structure 8923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCCAAAGGGCAACAAGCATGGCAAATTCATCATTGAAAGACAAGCATGCTGCAGCCATTTTGGTTATCAAGTTCATTTTCTCTTTGAGCATTCACACTACAATGTCCAACTGCATTTCACGGAAAGTGGCTTGAGGCTAATTGCTAAGAAAGCAATATCAAAGAACACTGGGGCTCGTGGATTGCGAGCAATTTTAGAAACTATATTTACCGATACCATGTATGAGATTCCTGACGTTAGAACTGGTGATGACATAATAGATGCAGTTGTAATTGATGAAGAGGCCGTTGGAACTGATGGCCAGGGTTGTGGAGCTAAAATCCTCTGTGGTCAGGGTGCATTGGATCAGTATCTTTCAAACAATAAAGAGAAGGATGTTCGGATTGCAACCACAGAAGGGTCTGATGTAGATCCCCAAGGGGAAGCCGAGCTTTCATCTGTTGTTGCTAGCATATCATATAAAGCTCGTTCTGTACAACTCTGTCACAAGGTTTGGCTTCAGAGCTGTAGGTACGCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

174

Amino Acids

19.21

Weight (kDa)

6.15

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ClpB_D2-small	PF10431	33 - 76	2.1e-06	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0380611
rosa_laevigata	RLG00000026282
rosa_multiflora	Rmu_co7971634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279140 Rroxscaffold_7G00217850
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1BG402700 Rh1CG417100 Rh1DG433000 Rh7CG247800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	354, 407
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	2 cut(s)	477, 515
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	2 cut(s)	38, 360
AjnI	CCWGG	1 cut(s)	303
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AluBI	AGCT	4 cut(s)	317, 433, 467, 507
AluI	AGCT	4 cut(s)	317, 433, 467, 507
AlwI	GGATC	2 cut(s)	354, 407
AoxI	GGCC	2 cut(s)	285, 301
ApeKI	GCWGC	2 cut(s)	51, 54
ApoI	RAATTY	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	260
AsuNHI	GCTAGC	1 cut(s)	449
BalI	TGGCCA	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	38, 66
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	305
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	2 cut(s)	52, 508
BisI	GCNGC	2 cut(s)	52, 55
BlsI	GCNGC	2 cut(s)	53, 56
Bme1390I	CCNGG	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	305
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	453
BmuI	ACTGGG	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	154
BsaBI	GATNNNNATC	2 cut(s)	351, 411
BsaJI	CCNNGG	2 cut(s)	304, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	2 cut(s)	175, 250
Bse8I	GATNNNNATC	2 cut(s)	351, 411
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	304, 418
BseGI	GGATG	1 cut(s)	382
BseJI	GATNNNNATC	2 cut(s)	351, 411
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	175, 250
BseXI	GCAGC	2 cut(s)	38, 66
BshFI	GGCC	2 cut(s)	287, 303
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	287, 303
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	475
Bsp143I	GATC	2 cut(s)	346, 412
BspANI	GGCC	2 cut(s)	287, 303
BspMAI	CTGCAG	1 cut(s)	56
BspOI	GCTAGC	1 cut(s)	453
BspPI	GGATC	2 cut(s)	354, 407
BsrGI	TGTACA	1 cut(s)	475
BsrI	ACTGG	2 cut(s)	175, 250
BssECI	CCNNGG	2 cut(s)	304, 418
BssMI	GATC	2 cut(s)	346, 412
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	418
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	276
BstAUI	TGTACA	1 cut(s)	475
BstC8I	GCNNGC	3 cut(s)	49, 189, 451
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	382
BstKTI	GATC	2 cut(s)	349, 415
BstMBI	GATC	2 cut(s)	346, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	2 cut(s)	52, 508
BstV1I	GCAGC	2 cut(s)	38, 66
BstX2I	RGATCY	1 cut(s)	412
BstXI	CCANNNNNNTGG	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	287, 303
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	3 cut(s)	49, 189, 451
Csp6I	GTAC	2 cut(s)	476, 514
CviAII	CATG	3 cut(s)	20, 48, 220
CviQI	GTAC	2 cut(s)	476, 514
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	2 cut(s)	348, 414
DpnII	GATC	2 cut(s)	346, 412
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	3 cut(s)	23, 51, 223
FaiI	YATR	9 cut(s)	21, 49, 206, 221, 225, 257, 455, 460, 462
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FatI	CATG	3 cut(s)	19, 47, 219
Fnu4HI	GCNGC	2 cut(s)	52, 55
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	52, 55
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	2 cut(s)	52, 55
HaeIII	GGCC	2 cut(s)	287, 303
Hin1II	CATG	3 cut(s)	23, 51, 223
HinfI	GANTC	1 cut(s)	229
HphI	GGTGA	1 cut(s)	260
Hpy188I	TCNGA	3 cut(s)	384, 406, 504
Hpy188III	TCNNGA	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	367, 392
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	5 cut(s)	54, 115, 266, 341, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	23, 51, 223
Kzo9I	GATC	2 cut(s)	346, 412
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	6 cut(s)	156, 231, 246, 290, 317, 320
Lsp1109I	GCAGC	2 cut(s)	38, 66
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	2 cut(s)	348, 414
MboI	GATC	2 cut(s)	346, 412
MboII	GAAGA	1 cut(s)	293
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	178
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	4 cut(s)	26, 141, 192, 273
MluNI	TGGCCA	1 cut(s)	303
MmeI	TCCRAC	2 cut(s)	133, 271
MnlI	CCTC	3 cut(s)	129, 277, 335
Mox20I	TGGCCA	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	2 cut(s)	346, 412
NheI	GCTAGC	1 cut(s)	449
NlaIII	CATG	3 cut(s)	23, 51, 223
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	485
NspI	RCATGY	1 cut(s)	51
PaeI	GCATGC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	53, 56
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	2 cut(s)	477, 515
RsaNI	GTAC	2 cut(s)	476, 514
RseI	CAYNNNNRTG	1 cut(s)	102
SatI	GCNGC	2 cut(s)	52, 55
Sau3AI	GATC	2 cut(s)	346, 412
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	7 cut(s)	240, 319, 435, 469, 495, 509, 515
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	2 cut(s)	52, 508
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
SphI	GCATGC	1 cut(s)	51
Sse9I	AATT	4 cut(s)	26, 141, 192, 273
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	418
TaiI	ACGT	1 cut(s)	240
TasI	AATT	4 cut(s)	26, 141, 192, 273
TatI	WGTACW	1 cut(s)	475
TfiI	GAWTC	1 cut(s)	229
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	2 cut(s)	51, 54
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	4 cut(s)	19, 65, 294, 426
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	1 cut(s)	51
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.