Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018545

Physical Location & Seq

Genomic Coordinates Reverse (-)

68377144 .. 68383424

Gene Structure 6281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCGACTAATTATCTTGATGGGGTTATGTCTCAGATTCCGGATATTAAAACAGGAGAAGATAGAGTAGATGCTGTAGTGGTTGATGAGGAGTCTGTGGATTCAGGAAATGCCCCTGGATGTGGAGGGAAGATTATTCGAGGGGACGGTGCATTGGAAAGATACCTTCGTGAAATAACGTTGAAAGAATCAGTGGAGTATGTCGAGGTAGCTGAAGGGGAGTCGGAGGGAGAATCAGAACATTCCAGGGCTATGAGCATCCAGAAGATGTTAACAAGCTTCATTCCGCAGCTCAAGGACTTCATATTCGTGAGCTCGCCGCTTTTGGATCTAGAGGCCAAGAGTTGTGAAACTGTCTACACCGCTTCAGCCAGCAATAAATTTAGAGAAACAAAGCCATTGCGCAACCCGTGCTTGGAGAACTTCGACGAGATAGAGTCCCCGCGGTGTGTTCAACAACTATGTGTTCTCACCGCCACTTCCAATCCTCCCGGACCCGAACCCGACTTGCTCATCCACCAAGCCGCCCAAGACCTTGACCGCCACCTCGCCAATCGCTTAGTCATCGCTTCCCGGCCTCTATGCGCCGTAATCAACCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

200

Amino Acids

22.01

Weight (kDa)

4.67

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0380611
rosa_laevigata	RLG00000026282
rosa_multiflora	Rmu_co7971634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279140 Rroxscaffold_7G00217850
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1BG402700 Rh1CG417100 Rh1DG433000 Rh7CG247800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	404
AccI	GTMKAC	2 cut(s)	5, 357
AccII	CGCG	1 cut(s)	445
AccIII	TCCGGA	1 cut(s)	40
AciI	CCGC	9 cut(s)	287, 320, 363, 443, 445, 474, 525, 541, 598
AclI	AACGTT	1 cut(s)	179
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	2 cut(s)	234, 351
AfiI	CCNNNNNNNGG	2 cut(s)	122, 415
AgsI	TTSAA	2 cut(s)	184, 455
AjnI	CCWGG	2 cut(s)	115, 245
AluBI	AGCT	4 cut(s)	212, 279, 292, 315
AluI	AGCT	4 cut(s)	212, 279, 292, 315
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	336
Aor13HI	TCCGGA	1 cut(s)	40
AoxI	GGCC	2 cut(s)	336, 575
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	380
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AspLEI	GCGC	2 cut(s)	405, 587
AspS9I	GGNCC	1 cut(s)	494
AsuC2I	CCSGG	2 cut(s)	492, 574
AsuHPI	GGTGA	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	494
BaeI	ACNNNNGTAYC	2 cut(s)	154, 187
BanII	GRGCYC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	572
BciT130I	CCWGG	2 cut(s)	117, 247
BcnI	CCSGG	2 cut(s)	492, 574
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	2 cut(s)	332, 601
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	3 cut(s)	290, 320, 525
BlsI	GCNGC	3 cut(s)	291, 321, 526
Bme1390I	CCNGG	4 cut(s)	117, 247, 492, 574
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	1 cut(s)	496
BmrFI	CCNGG	4 cut(s)	117, 247, 492, 574
BmsI	GCATC	2 cut(s)	61, 267
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	2 cut(s)	492, 574
BsaJI	CCNNGG	3 cut(s)	115, 246, 443
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 415
Bse3DI	GCAATG	1 cut(s)	398
BseAI	TCCGGA	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	117, 247
BseDI	CCNNGG	3 cut(s)	115, 246, 443
BseGI	GGATG	3 cut(s)	125, 258, 513
BseLI	CCNNNNNNNGG	2 cut(s)	122, 415
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	301
Bsh1236I	CGCG	1 cut(s)	445
BshFI	GGCC	2 cut(s)	338, 577
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	3 cut(s)	41, 492, 574
BslFI	GGGAC	2 cut(s)	158, 424
BslI	CCNNNNNNNGG	2 cut(s)	122, 415
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	2 cut(s)	158, 424
BsnI	GGCC	2 cut(s)	338, 577
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp13I	TCCGGA	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	9 cut(s)	287, 320, 363, 443, 445, 474, 525, 541, 598
BspANI	GGCC	2 cut(s)	338, 577
BspCNI	CTCAG	1 cut(s)	46
BspEI	TCCGGA	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	496
BspPI	GGATC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	398
BssECI	CCNNGG	3 cut(s)	115, 246, 443
BssMI	GATC	1 cut(s)	328
Bst2UI	CCWGG	2 cut(s)	117, 247
Bst4CI	ACNGT	2 cut(s)	149, 355
BstAPI	GCANNNNNTGC	1 cut(s)	411
BstC8I	GCNNGC	2 cut(s)	317, 373
BstDEI	CTNAG	2 cut(s)	33, 559
BstDSI	CCRYGG	1 cut(s)	443
BstF5I	GGATG	3 cut(s)	125, 258, 513
BstFNI	CGCG	1 cut(s)	445
BstHHI	GCGC	2 cut(s)	405, 587
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	411
BstNI	CCWGG	2 cut(s)	117, 247
BstSCI	CCNGG	4 cut(s)	115, 245, 490, 572
BstSFI	CTRYAG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	338, 577
BtgI	CCRYGG	1 cut(s)	443
BtgZI	GCGATG	1 cut(s)	550
BtsCI	GGATG	3 cut(s)	125, 258, 513
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	317, 373
CfoI	GCGC	2 cut(s)	405, 587
Cfr13I	GGNCC	1 cut(s)	494
Cfr42I	CCGCGG	1 cut(s)	446
DdeI	CTNAG	2 cut(s)	33, 559
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Ecl136II	GAGCTC	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	315
Eco57I	CTGAAG	2 cut(s)	234, 351
EcoICRI	GAGCTC	1 cut(s)	315
EcoRII	CCWGG	2 cut(s)	115, 245
EcoT38I	GRGCYC	1 cut(s)	317
FaiI	YATR	6 cut(s)	29, 201, 254, 305, 463, 583
FaqI	GGGAC	2 cut(s)	158, 424
FauI	CCCGC	1 cut(s)	450
FblI	GTMKAC	2 cut(s)	5, 357
Fnu4HI	GCNGC	3 cut(s)	290, 320, 525
FokI	GGATG	3 cut(s)	132, 245, 500
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	3 cut(s)	290, 320, 525
FspBI	CTAG	2 cut(s)	332, 601
FspI	TGCGCA	1 cut(s)	404
GlaI	GCGC	2 cut(s)	404, 586
GluI	GCNGC	3 cut(s)	290, 320, 525
HaeIII	GGCC	2 cut(s)	338, 577
HapII	CCGG	3 cut(s)	41, 492, 574
HhaI	GCGC	2 cut(s)	405, 587
Hin6I	GCGC	2 cut(s)	403, 585
HinP1I	GCGC	2 cut(s)	403, 585
HincII	GTYRAC	2 cut(s)	6, 273
HindII	GTYRAC	2 cut(s)	6, 273
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	7 cut(s)	37, 92, 101, 188, 221, 233, 437
HpaI	GTTAAC	1 cut(s)	273
HpaII	CCGG	3 cut(s)	41, 492, 574
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	3 cut(s)	6, 273, 358
Hpy188I	TCNGA	3 cut(s)	36, 226, 238
Hpy188III	TCNNGA	7 cut(s)	17, 41, 105, 170, 262, 310, 332
Hpy8I	GTNNAC	3 cut(s)	6, 273, 358
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	2 cut(s)	176, 209
HpyCH4III	ACNGT	2 cut(s)	149, 355
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	411
HpyF3I	CTNAG	2 cut(s)	33, 559
HpySE526I	ACGT	1 cut(s)	179
HspAI	GCGC	2 cut(s)	403, 585
Kpn2I	TCCGGA	1 cut(s)	40
KspAI	GTTAAC	1 cut(s)	273
KspI	CCGCGG	1 cut(s)	446
Kzo9I	GATC	1 cut(s)	328
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	2 cut(s)	61, 267
MaeI	CTAG	2 cut(s)	332, 601
MaeII	ACGT	1 cut(s)	179
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	3 cut(s)	71, 142, 277
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	2 cut(s)	10, 380
MlyI	GAGTC	3 cut(s)	101, 230, 446
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	9 cut(s)	82, 119, 134, 199, 220, 328, 498, 557, 588
MroI	TCCGGA	1 cut(s)	40
MseI	TTAA	2 cut(s)	48, 272
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	3 cut(s)	41, 492, 574
MspR9I	CCNGG	4 cut(s)	117, 247, 492, 574
MvaI	CCWGG	2 cut(s)	117, 247
MvnI	CGCG	1 cut(s)	445
MwoI	GCNNNNNNNGC	1 cut(s)	411
NciI	CCSGG	2 cut(s)	492, 574
NdeII	GATC	1 cut(s)	328
NlaIV	GGNNCC	1 cut(s)	496
NsbI	TGCGCA	1 cut(s)	404
PfeI	GAWTC	4 cut(s)	37, 101, 188, 233
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	3 cut(s)	291, 321, 526
PleI	GAGTC	3 cut(s)	100, 229, 445
PpsI	GAGTC	3 cut(s)	100, 229, 445
Psp124BI	GAGCTC	1 cut(s)	317
Psp1406I	AACGTT	1 cut(s)	179
Psp6I	CCWGG	2 cut(s)	115, 245
PspGI	CCWGG	2 cut(s)	115, 245
PspN4I	GGNNCC	1 cut(s)	496
PspPI	GGNCC	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	317
SacII	CCGCGG	1 cut(s)	446
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	48, 272
SatI	GCNGC	3 cut(s)	290, 320, 525
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	3 cut(s)	101, 230, 446
ScrFI	CCNGG	4 cut(s)	117, 247, 492, 574
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	9 cut(s)	168, 182, 210, 214, 281, 294, 317, 537, 549
SfaNI	GCATC	2 cut(s)	61, 267
SfcI	CTRYAG	1 cut(s)	75
Sfr303I	CCGCGG	1 cut(s)	446
SgrBI	CCGCGG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	2 cut(s)	10, 380
SsiI	CCGC	9 cut(s)	287, 320, 363, 443, 445, 474, 525, 541, 598
SspMI	CTAG	2 cut(s)	332, 601
SstI	GAGCTC	1 cut(s)	317
StyD4I	CCNGG	4 cut(s)	115, 245, 490, 572
TaaI	ACNGT	2 cut(s)	149, 355
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	4 cut(s)	5, 139, 204, 426
TasI	AATT	2 cut(s)	10, 380
TauI	GCSGC	2 cut(s)	322, 527
TfiI	GAWTC	4 cut(s)	37, 101, 188, 233
Tru1I	TTAA	2 cut(s)	48, 272
Tru9I	TTAA	2 cut(s)	48, 272
TscAI	CASTG	1 cut(s)	198
TseI	GCWGC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	271, 292
TspRI	CASTG	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	1 cut(s)	380
XbaI	TCTAGA	1 cut(s)	331
XmiI	GTMKAC	2 cut(s)	5, 357
XspI	CTAG	2 cut(s)	332, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.