Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7971634.1

Orthogroup ID

OG0018545

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 418

Gene Structure 418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7971634.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atggcaaagaaagcgatggctaagaataccggtgccaggggattaagatcgatattggaaagtattctaaccgaagccatgtatgagattccggatgttaaaacaggagaagatagagtagatgctgtagtggttgatgaggagtctgtggattcaggaaatgcccctggatgtggagggaagattgttcgaggggacggtgcattggaaagataccttcgtgaaataaagttgaaagaatcagtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

82

Amino Acids

8.81

Weight (kDa)

5.14

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0380611
rosa_laevigata	RLG00000026282
rosa_multiflora	Rmu_co7971634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279140 Rroxscaffold_7G00217850
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1BG402700 Rh1CG417100 Rh1DG433000 Rh7CG247800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	36, 173
AgeI	ACCGGT	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	2 cut(s)	35, 166
Aor13HI	TCCGGA	1 cut(s)	91
AsiGI	ACCGGT	1 cut(s)	29
Asp700I	GAANNNNTTC	1 cut(s)	63
BaeI	ACNNNNGTAYC	2 cut(s)	205, 238
BanI	GGYRCC	1 cut(s)	32
BccI	CCATC	1 cut(s)	10
BciT130I	CCWGG	2 cut(s)	37, 168
BfmI	CTRYAG	1 cut(s)	126
Bme1390I	CCNGG	2 cut(s)	37, 168
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	2 cut(s)	37, 168
BmsI	GCATC	1 cut(s)	112
Bsa29I	ATCGAT	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	36, 166
BsaWI	WCCGGW	2 cut(s)	29, 91
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 173
Bse118I	RCCGGY	1 cut(s)	29
Bse8I	GATNNNNATC	1 cut(s)	46
BseAI	TCCGGA	1 cut(s)	91
BseBI	CCWGG	2 cut(s)	37, 168
BseCI	ATCGAT	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	36, 166
BseGI	GGATG	2 cut(s)	100, 176
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	36, 173
BseRI	GAGGAG	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	32
BshTI	ACCGGT	1 cut(s)	29
BshVI	ATCGAT	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	30, 92
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	36, 173
BsmFI	GGGAC	1 cut(s)	209
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	47
BspDI	ATCGAT	1 cut(s)	50
BspEI	TCCGGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	36, 166
BssMI	GATC	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	37, 168
Bst4CI	ACNGT	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	100, 176
BstKTI	GATC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	37, 168
BstSCI	CCNGG	2 cut(s)	35, 166
BstSFI	CTRYAG	1 cut(s)	126
Bsu15I	ATCGAT	1 cut(s)	50
BsuTUI	ATCGAT	1 cut(s)	50
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	100, 176
Cfr10I	RCCGGY	1 cut(s)	29
ClaI	ATCGAT	1 cut(s)	50
CspAI	ACCGGT	1 cut(s)	29
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	2 cut(s)	20, 77
CviKI_1	RGCY	2 cut(s)	20, 77
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	1 cut(s)	49
DpnII	GATC	1 cut(s)	47
EcoRII	CCWGG	2 cut(s)	35, 166
FaeI	CATG	1 cut(s)	82
FaiI	YATR	2 cut(s)	80, 84
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	1 cut(s)	78
FokI	GGATG	2 cut(s)	107, 183
HapII	CCGG	2 cut(s)	30, 92
Hin1II	CATG	1 cut(s)	82
HinfI	GANTC	4 cut(s)	88, 143, 152, 239
HpaII	CCGG	2 cut(s)	30, 92
Hpy188III	TCNNGA	3 cut(s)	92, 156, 221
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	82
Kpn2I	TCCGGA	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	47
LpnPI	CCDG	8 cut(s)	22, 43, 49, 90, 105, 141, 153, 180
LweI	GCATC	1 cut(s)	112
MalI	GATC	1 cut(s)	49
MboI	GATC	1 cut(s)	47
MboII	GAAGA	2 cut(s)	122, 193
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	3 cut(s)	133, 170, 185
MroI	TCCGGA	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	2 cut(s)	44, 99
MspI	CCGG	2 cut(s)	30, 92
MspR9I	CCNGG	2 cut(s)	37, 168
MvaI	CCWGG	2 cut(s)	37, 168
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	3 cut(s)	88, 152, 239
PinAI	ACCGGT	1 cut(s)	29
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	35, 166
PspGI	CCWGG	2 cut(s)	35, 166
PspN4I	GGNNCC	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	44, 99
Sau3AI	GATC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	37, 168
SetI	ASST	1 cut(s)	219
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	35, 166
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	50, 190
TfiI	GAWTC	3 cut(s)	88, 152, 239
Tru1I	TTAA	2 cut(s)	44, 99
Tru9I	TTAA	2 cut(s)	44, 99
XmnI	GAANNNNTTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.