Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0018545

Physical Location & Seq

Genomic Coordinates Reverse (-)

23274909 .. 23276448

Gene Structure 1540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG247800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGATGTTCCGAATGAATGACGTCCAACTGCATTTCACGGAAAGTGGCTTGAGGCTACTTGCTAAGAAAGCAATATCAAAGAACACTGGGGCTCGTGGATTACGAGCAATTTTAGAAACTATATTAACGGATACCATGTATGAGATTCCTGACGTTAGAATTGGTGATGACATAATAGATGCAGTTGTAATTGATGAAGAGGCAGTTGGAACTGATGGCCAGGGTTGTGGAGCTAAGATCCTTTATGGTAAGGGTGCATTGGATCATTATCTTTCAAAAAATAAAGAGAAGGATGTTCAGACTGCAATCAGACGCCCAAAGGGGAAGCCGAGCTTTCTTCTGTTGTTGCTAGCATGTAACTTTATGTGGAAACTTATTTGTATCGCAATCTTGTACATATCAAACATTTATTTAATAAATCATATAAAGCTCGTTGTGTACAACTCTTTCACAAGGTTTGGCTCCAGAGCTGTAGGTACGCTCTGTAAGTGTCATCAGACAGTCTATAGTAAATCTCTCATAGTCATCTTTGTCAAAAATGATTGTTTCTTCGATCGAGTGTATAGTGTATATGATTGTTTCATTGCTTCGATGTTTCGAGACAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

203

Amino Acids

22.97

Weight (kDa)

8.86

Isoelectric Point (pI)

26.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ClpB_D2-small	PF10431	6 - 48	5.9e-07	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0380611
rosa_laevigata	RLG00000026282
rosa_multiflora	Rmu_co7971634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279140 Rroxscaffold_7G00217850
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1BG402700 Rh1CG417100 Rh1DG433000 Rh7CG247800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AclWI	GGATC	2 cut(s)	232, 270
AcoI	YGGCCR	1 cut(s)	217
AcyI	GRCGYC	2 cut(s)	21, 313
AfaI	GTAC	3 cut(s)	395, 440, 478
AgsI	TTSAA	1 cut(s)	276
AjnI	CCWGG	1 cut(s)	219
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	4 cut(s)	233, 333, 430, 470
AluI	AGCT	4 cut(s)	233, 333, 430, 470
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	2 cut(s)	232, 270
AoxI	GGCC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	176
AsuNHI	GCTAGC	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	94
BauI	CACGAG	1 cut(s)	93
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	471, 505
BfuI	GTATCC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	169
BmtI	GCTAGC	1 cut(s)	353
BmuI	ACTGGG	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	2 cut(s)	21, 313
BsaJI	CCNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	267
BseMI	GCAATG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	91
Bsh1285I	CGRYCG	1 cut(s)	556
BshFI	GGCC	1 cut(s)	219
BsiEI	CGRYCG	1 cut(s)	556
BsmAI	GTCTC	1 cut(s)	594
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp1407I	TGTACA	2 cut(s)	393, 438
Bsp143I	GATC	3 cut(s)	237, 262, 553
BspANI	GGCC	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	463
BspOI	GCTAGC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	232, 270
BsrDI	GCAATG	1 cut(s)	582
BsrGI	TGTACA	2 cut(s)	393, 438
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	237, 262, 553
BssNI	GRCGYC	2 cut(s)	21, 313
BssSI	CACGAG	1 cut(s)	93
Bst2BI	CACGAG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	1 cut(s)	192
BstACI	GRCGYC	2 cut(s)	21, 313
BstAUI	TGTACA	2 cut(s)	393, 438
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	63, 234
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	3 cut(s)	240, 265, 556
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	3 cut(s)	237, 262, 553
BstMCI	CGRYCG	1 cut(s)	556
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	2 cut(s)	471, 505
BstX2I	RGATCY	1 cut(s)	237
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	237
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	351
CseI	GACGC	1 cut(s)	321
Csp6I	GTAC	3 cut(s)	394, 439, 477
CviAII	CATG	2 cut(s)	136, 354
CviQI	GTAC	3 cut(s)	394, 439, 477
DdeI	CTNAG	2 cut(s)	63, 234
DpnI	GATC	3 cut(s)	239, 264, 555
DpnII	GATC	3 cut(s)	237, 262, 553
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	94
FaeI	CATG	2 cut(s)	139, 357
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	2 cut(s)	135, 353
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	94
FspBI	CTAG	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	219
HgaI	GACGC	1 cut(s)	321
Hin1I	GRCGYC	2 cut(s)	21, 313
Hin1II	CATG	2 cut(s)	139, 357
HinfI	GANTC	1 cut(s)	145
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	4 cut(s)	11, 300, 311, 498
Hpy188III	TCNNGA	3 cut(s)	149, 465, 599
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	2 cut(s)	21, 153
HpyCH4V	TGCA	4 cut(s)	31, 182, 257, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	63, 234
HpySE526I	ACGT	2 cut(s)	21, 153
Hsp92I	GRCGYC	2 cut(s)	21, 313
Hsp92II	CATG	2 cut(s)	139, 357
Kzo9I	GATC	3 cut(s)	237, 262, 553
LmnI	GCTCC	2 cut(s)	230, 467
LpnPI	CCDG	5 cut(s)	72, 162, 206, 233, 478
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	2 cut(s)	21, 153
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	3 cut(s)	239, 264, 555
MboI	GATC	3 cut(s)	237, 262, 553
MboII	GAAGA	3 cut(s)	209, 329, 541
MfeI	CAATTG	1 cut(s)	604
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	94
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	4 cut(s)	108, 159, 189, 604
MluNI	TGGCCA	1 cut(s)	219
MmeI	TCCRAC	2 cut(s)	49, 187
MnlI	CCTC	2 cut(s)	45, 193
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	2 cut(s)	125, 413
Msp20I	TGGCCA	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	221
MunI	CAATTG	1 cut(s)	604
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	3 cut(s)	237, 262, 553
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	2 cut(s)	139, 357
NlaIV	GGNNCC	1 cut(s)	463
NmeAIII	GCCGAG	1 cut(s)	354
NspI	RCATGY	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	145
Ple19I	CGATCG	1 cut(s)	556
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	237
PvuI	CGATCG	1 cut(s)	556
RsaI	GTAC	3 cut(s)	395, 440, 478
RsaNI	GTAC	3 cut(s)	394, 439, 477
SaqAI	TTAA	2 cut(s)	125, 413
Sau3AI	GATC	3 cut(s)	237, 262, 553
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	8 cut(s)	24, 156, 235, 335, 432, 458, 472, 478
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	2 cut(s)	471, 505
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	4 cut(s)	108, 159, 189, 604
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	2 cut(s)	24, 156
TaqI	TCGA	4 cut(s)	552, 556, 590, 598
TasI	AATT	4 cut(s)	108, 159, 189, 604
TatI	WGTACW	2 cut(s)	393, 438
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	125, 413
Tru9I	TTAA	2 cut(s)	125, 413
TscAI	CASTG	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	29, 210, 571
TspGWI	ACGGA	2 cut(s)	53, 143
TspRI	CASTG	1 cut(s)	91
XceI	RCATGY	1 cut(s)	357
XspI	CTAG	1 cut(s)	350
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.