Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0018545

Physical Location & Seq

Genomic Coordinates Forward (+)

52634947 .. 52636461

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG402700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAACTGGGTTTCCCCAAAGCAGGTCCAACTGCATTTCACGGAAAGTGGCTTGAGGCTACTTGCTGAGAAAGCAATATCAAAGAACACTGGGGCTCGTGGATTACGAGCAATTTTAGAAACTATATTAACGGATACCATGTATGAGATTCCTGACGTTAGAACTGGTGATGACATAATAGATGCAGTTGTAATTGATGAAGAGGCCGTTGGAGCTGATGGCCAGGGTTGTGGAGCTAAAATCCTTTGTGTTAAGGGTGCATTGTATCAGTATATTTCAAACAATAAAGAGAAGGATGTTCGTCAACTGATTTCGGCTTTCAGATTACTTCCTCCAGATGTTAAAATCCTAATAATGCTTTATTCTGTCTCGCAGACTGCAACCACAGAAGGGTCTGATGTAGATGCCGAAGGGGAAGCAAGCCGAGCTTTCTTCTGTTGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

148

Amino Acids

16.13

Weight (kDa)

4.77

Isoelectric Point (pI)

23.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ClpB_D2-small	PF10431	7 - 49	2.7e-07	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0380611
rosa_laevigata	RLG00000026282
rosa_multiflora	Rmu_co7971634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279140 Rroxscaffold_7G00217850
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1BG402700 Rh1CG417100 Rh1DG433000 Rh7CG247800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	13
AcoI	YGGCCR	1 cut(s)	220
AfiI	CCNNNNNNNGG	2 cut(s)	22, 390
AgsI	TTSAA	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	3 cut(s)	215, 236, 428
AluI	AGCT	3 cut(s)	215, 236, 428
Alw26I	GTCTC	1 cut(s)	373
AoxI	GGCC	2 cut(s)	204, 220
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	25
BalI	TGGCCA	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	97
BauI	CACGAG	1 cut(s)	96
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	224
BciVI	GTATCC	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	373
BfuAI	ACCTGC	1 cut(s)	13
BfuI	GTATCC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	2 cut(s)	16, 99
BmsI	GCATC	2 cut(s)	172, 394
BmuI	ACTGGG	2 cut(s)	16, 99
BpmI	CTGGAG	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 390
Bse1I	ACTGG	3 cut(s)	11, 94, 169
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	22, 390
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	3 cut(s)	11, 94, 169
BshFI	GGCC	2 cut(s)	206, 222
BslI	CCNNNNNNNGG	2 cut(s)	22, 390
BsmAI	GTCTC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	206, 222
Bsp1286I	GDGCHC	1 cut(s)	97
BspANI	GGCC	2 cut(s)	206, 222
BspCNI	CTCAG	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	13
BsrI	ACTGG	3 cut(s)	11, 94, 169
BssECI	CCNNGG	1 cut(s)	223
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 212, 425
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstXI	CCANNNNNNTGG	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	206, 222
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	25
CviAII	CATG	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	97
FaeI	CATG	1 cut(s)	142
FaiI	YATR	5 cut(s)	125, 140, 144, 176, 273
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FatI	CATG	1 cut(s)	138
FokI	GGATG	1 cut(s)	308
FriOI	GRGCYC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	2 cut(s)	206, 222
Hin1II	CATG	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	305
HindII	GTYRAC	1 cut(s)	305
HinfI	GANTC	1 cut(s)	148
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	2 cut(s)	323, 397
Hpy188III	TCNNGA	2 cut(s)	152, 335
Hpy8I	GTNNAC	1 cut(s)	305
HpyAV	CCTTC	3 cut(s)	286, 383, 404
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	4 cut(s)	34, 185, 260, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 212, 425
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	142
LmnI	GCTCC	2 cut(s)	212, 233
LpnPI	CCDG	7 cut(s)	8, 75, 150, 165, 209, 236, 348
LweI	GCATC	2 cut(s)	172, 394
MaeII	ACGT	1 cut(s)	156
MboII	GAAGA	2 cut(s)	212, 424
MhlI	GDGCHC	1 cut(s)	97
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	2 cut(s)	111, 192
MluNI	TGGCCA	1 cut(s)	222
MmeI	TCCRAC	2 cut(s)	52, 190
MnlI	CCTC	3 cut(s)	48, 196, 342
Mox20I	TGGCCA	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	3 cut(s)	128, 252, 342
Msp20I	TGGCCA	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	71, 212, 425
NlaIII	CATG	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	25
SaqAI	TTAA	3 cut(s)	128, 252, 342
Sau96I	GGNCC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	5 cut(s)	27, 159, 217, 238, 430
SfaNI	GCATC	2 cut(s)	172, 394
SinI	GGWCC	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	111, 192
StyD4I	CCNGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	159
TasI	AATT	2 cut(s)	111, 192
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	3 cut(s)	128, 252, 342
Tru9I	TTAA	3 cut(s)	128, 252, 342
TscAI	CASTG	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	17, 213
TspGWI	ACGGA	2 cut(s)	56, 146
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.