Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018545

Physical Location & Seq

Genomic Coordinates Reverse (-)

1868214 .. 1870917

Gene Structure 2704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026282

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGGACTTATTCAAATGGAGCGATTCATTGGGTCAGTGACCGTAAACCTGGGATTTTCGAGCCACCTGTCTATGCTTTTGATCTGGCAAATGAGGAGTTTCGGGAAATGCCATTGCCTGACGCTAAAAAGTATACTGAATTTTGGATGATGAAAGAGTATGGCCTGCCTGAATCTTGGGTTAAACTCTTTGGGTTTAATGTCCAACTGCATTTCACGGAAAGTGGCTTGAGGCTAATTGCCAAGAAAGCAATATCAAAGAACACTGGGGATCGTGGATTACAAGCAATTTTAGAAACTATATTAACGGATACCATGTATGAGATTCCTGACGTTAGAACTGGTGATGACATAATAGATGCAGTTGTAATTGATGAAGACGCAGTTGGAACTGATGGCCAGGGTTGTGGAGCTAAAATCCTTTATGATGTTAAAATGCTAATAATGCTTTATTCTGTCACGCAGATTGCAACCACAGAAGGGTCTGATGTAGAGCCCGAAGGGGAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

171

Amino Acids

18.97

Weight (kDa)

4.42

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0380611
rosa_laevigata	RLG00000026282
rosa_multiflora	Rmu_co7971634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279140 Rroxscaffold_7G00217850
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1BG402700 Rh1CG417100 Rh1DG433000 Rh7CG247800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	480
AgsI	TTSAA	1 cut(s)	15
AjnI	CCWGG	2 cut(s)	49, 399
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	1 cut(s)	413
AluI	AGCT	1 cut(s)	413
AlwI	GGATC	1 cut(s)	279
AoxI	GGCC	2 cut(s)	163, 397
ApoI	RAATTY	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	356
BalI	TGGCCA	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	384
BccI	CCATC	1 cut(s)	389
BciT130I	CCWGG	2 cut(s)	51, 401
BciVI	GTATCC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	511
BfuI	GTATCC	1 cut(s)	304
Bme1390I	CCNGG	2 cut(s)	51, 401
BmrFI	CCNGG	2 cut(s)	51, 401
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	349
BmuI	ACTGGG	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	250
BsaJI	CCNNGG	2 cut(s)	50, 400
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse1I	ACTGG	2 cut(s)	271, 346
Bse3DI	GCAATG	1 cut(s)	113
BseBI	CCWGG	2 cut(s)	51, 401
BseDI	CCNNGG	2 cut(s)	50, 400
BseGI	GGATG	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMI	GCAATG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	271, 346
BseRI	GAGGAG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	165, 399
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	165, 399
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp143I	GATC	2 cut(s)	82, 271
BspANI	GGCC	2 cut(s)	165, 399
BspPI	GGATC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	271, 346
BssECI	CCNNGG	2 cut(s)	50, 400
BssMI	GATC	2 cut(s)	82, 271
BssNAI	GTATAC	1 cut(s)	135
Bst1107I	GTATAC	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	51, 401
Bst4CI	ACNGT	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	2 cut(s)	85, 274
BstMBI	GATC	2 cut(s)	82, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 445
BstNI	CCWGG	2 cut(s)	51, 401
BstSCI	CCNGG	2 cut(s)	49, 399
BstV2I	GAAGAC	1 cut(s)	384
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstZ17I	GTATAC	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	165, 399
BtsCI	GGATG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	43, 264
Cac8I	GCNNGC	1 cut(s)	167
CseI	GACGC	2 cut(s)	131, 389
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	8 cut(s)	64, 165, 228, 235, 399, 413, 496, 509
CviKI_1	RGCY	8 cut(s)	64, 165, 228, 235, 399, 413, 496, 509
DpnI	GATC	2 cut(s)	84, 273
DpnII	GATC	2 cut(s)	82, 271
EaeI	YGGCCR	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	49, 399
EcoT38I	GRGCYC	1 cut(s)	498
FaeI	CATG	1 cut(s)	319
FaiI	YATR	8 cut(s)	75, 135, 162, 302, 317, 321, 353, 426
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	315
FblI	GTMKAC	1 cut(s)	134
FokI	GGATG	1 cut(s)	160
FriOI	GRGCYC	1 cut(s)	498
FspBI	CTAG	1 cut(s)	511
HaeIII	GGCC	2 cut(s)	165, 399
HgaI	GACGC	2 cut(s)	131, 389
Hin1II	CATG	1 cut(s)	319
HinfI	GANTC	3 cut(s)	25, 173, 325
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	47, 135
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	2 cut(s)	104, 329
Hpy8I	GTNNAC	2 cut(s)	47, 135
HpyAV	CCTTC	2 cut(s)	473, 494
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	3 cut(s)	211, 362, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 445
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	82, 271
LmnI	GCTCC	2 cut(s)	20, 410
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	511
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	38, 457
MalI	GATC	2 cut(s)	84, 273
MboI	GATC	2 cut(s)	82, 271
MboII	GAAGA	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	498
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	4 cut(s)	140, 237, 288, 369
MluNI	TGGCCA	1 cut(s)	399
MmeI	TCCRAC	2 cut(s)	229, 367
MnlI	CCTC	2 cut(s)	88, 225
Mox20I	TGGCCA	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	4 cut(s)	183, 198, 305, 432
Msp20I	TGGCCA	1 cut(s)	399
MspR9I	CCNGG	2 cut(s)	51, 401
MvaI	CCWGG	2 cut(s)	51, 401
MwoI	GCNNNNNNNGC	2 cut(s)	248, 445
NdeII	GATC	2 cut(s)	82, 271
NlaIII	CATG	1 cut(s)	319
NmuCI	GTSAC	2 cut(s)	38, 457
PfeI	GAWTC	3 cut(s)	25, 173, 325
Psp6I	CCWGG	2 cut(s)	49, 399
PspGI	CCWGG	2 cut(s)	49, 399
SaqAI	TTAA	4 cut(s)	183, 198, 305, 432
Sau3AI	GATC	2 cut(s)	82, 271
ScrFI	CCNGG	2 cut(s)	51, 401
SduI	GDGCHC	1 cut(s)	498
SetI	ASST	4 cut(s)	52, 70, 336, 415
SfaNI	GCATC	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	4 cut(s)	140, 237, 288, 369
SspMI	CTAG	1 cut(s)	511
StyD4I	CCNGG	2 cut(s)	49, 399
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	140, 237, 288, 369
TfiI	GAWTC	3 cut(s)	25, 173, 325
Tru1I	TTAA	4 cut(s)	183, 198, 305, 432
Tru9I	TTAA	4 cut(s)	183, 198, 305, 432
TscAI	CASTG	2 cut(s)	43, 271
TseFI	GTSAC	2 cut(s)	38, 457
Tsp45I	GTSAC	2 cut(s)	38, 457
TspDTI	ATGAA	3 cut(s)	17, 167, 390
TspGWI	ACGGA	2 cut(s)	233, 323
TspRI	CASTG	2 cut(s)	43, 271
XapI	RAATTY	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	134
XspI	CTAG	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.