Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018545

Physical Location & Seq

Genomic Coordinates Forward (+)

67796903 .. 67803880

Gene Structure 6978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG417100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAATCTTCATTTCAACCCGTCCCTCTTCAGTCTCTTCACAAACCTTGAAGGTCTTTCACTCTTTCCCATCTCTATCGGTCCATCTCCATCTGGTTTAGTTGGGTTGAGAAGATTGAAGGTGTTGGCAATGTTGAAGAACAAGGAGGAGCAGGAGCTCCAACATGTCCAACTGCATTTCACGGAAAGTGGCTTGAGGCTACTTGCTGAGAAAGCAATATCAAAGAACACTGGGGCTCGTGGATTACGAGCAATTTTAGAAACTATATTAACGGATACCATGTATGAGATTCCTGACGTTAGAACTGGTGATGACATAATAGATGCAGTTGTAATTGATGAAGAGGCCGTTGGAGCTGATGGCCAGGGTTGTGGAGCTAAAATCCTTTGTGTTAAGGGTGCATTGTATCAGTATATTTCAAACAATAAAGAGAAGGATGTTCGTCAACTGATTTCGGCTTTCAGATTACTTCCTCCAGATGTTAAAATCCTAATAATGCTTTATTCTGTCTCGCAGACTGCAACCACAGAAGGGTCTGATGTAGATGCCGAAGGGGAAGCAAGCCGAGCTTTCTTCTGTTGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

195

Amino Acids

21.3

Weight (kDa)

5.12

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ClpB_D2-small	PF10431	51 - 96	8.2e-08	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018545)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0380611
rosa_laevigata	RLG00000026282
rosa_multiflora	Rmu_co7971634.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279140 Rroxscaffold_7G00217850
rosa_rugosa	Rorug01G0423000
rosa_samantha	Rh1BG402700 Rh1CG417100 Rh1DG433000 Rh7CG247800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	531
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	5 cut(s)	16, 50, 118, 136, 420
AjnI	CCWGG	1 cut(s)	363
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AluBI	AGCT	4 cut(s)	157, 356, 377, 569
AluI	AGCT	4 cut(s)	157, 356, 377, 569
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	38, 514
AoxI	GGCC	2 cut(s)	345, 361
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	80
BalI	TGGCCA	1 cut(s)	363
BanII	GRGCYC	2 cut(s)	159, 238
BauI	CACGAG	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	4 cut(s)	77, 91, 97, 353
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	365
BciVI	GTATCC	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	38, 514
BfuI	GTATCC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	365
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	313, 535
BmuI	ACTGGG	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	531
Bse1I	ACTGG	2 cut(s)	235, 310
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	531
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	2 cut(s)	235, 310
BseRI	GAGGAG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	347, 363
BsiHKAI	GWGCWC	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	531
BsmAI	GTCTC	2 cut(s)	38, 514
BsmFI	GGGAC	1 cut(s)	7
BsnI	GGCC	2 cut(s)	347, 363
Bsp1286I	GDGCHC	2 cut(s)	159, 238
BspANI	GGCC	2 cut(s)	347, 363
BspCNI	CTCAG	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	235, 310
BssECI	CCNNGG	1 cut(s)	364
BssSI	CACGAG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	365
Bst6I	CTCTTC	3 cut(s)	32, 41, 336
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	442
BstMAI	GTCTC	2 cut(s)	38, 514
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 353, 566
BstNI	CCWGG	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	363
BstXI	CCANNNNNNTGG	1 cut(s)	371
BsuI	GTATCC	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	347, 363
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	80
CviAII	CATG	2 cut(s)	164, 280
DdeI	CTNAG	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	3 cut(s)	32, 41, 336
EarI	CTCTTC	3 cut(s)	32, 41, 336
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	2 cut(s)	159, 238
Eco47I	GGWCC	1 cut(s)	80
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	363
EcoT38I	GRGCYC	2 cut(s)	159, 238
FaeI	CATG	2 cut(s)	167, 283
FaiI	YATR	6 cut(s)	165, 266, 281, 285, 317, 414
FalI	AAGNNNNNCTT	2 cut(s)	553, 585
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	2 cut(s)	163, 279
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	2 cut(s)	159, 238
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	347, 363
Hin1II	CATG	2 cut(s)	167, 283
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HinfI	GANTC	2 cut(s)	4, 289
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188I	TCNGA	2 cut(s)	464, 538
Hpy188III	TCNNGA	2 cut(s)	293, 476
Hpy8I	GTNNAC	1 cut(s)	446
HpyAV	CCTTC	5 cut(s)	44, 112, 427, 524, 545
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	4 cut(s)	175, 326, 401, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 353, 566
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	167, 283
LmnI	GCTCC	5 cut(s)	148, 154, 162, 353, 374
LpnPI	CCDG	8 cut(s)	78, 137, 216, 291, 306, 350, 377, 489
LweI	GCATC	2 cut(s)	313, 535
MaeII	ACGT	1 cut(s)	297
MboII	GAAGA	6 cut(s)	19, 28, 123, 148, 353, 565
MhlI	GDGCHC	2 cut(s)	159, 238
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	2 cut(s)	252, 333
MluNI	TGGCCA	1 cut(s)	363
MmeI	TCCRAC	3 cut(s)	184, 193, 331
MnlI	CCTC	5 cut(s)	35, 139, 189, 337, 483
Mox20I	TGGCCA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	3 cut(s)	269, 393, 483
Msp20I	TGGCCA	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	3 cut(s)	212, 353, 566
NlaIII	CATG	2 cut(s)	167, 283
NspI	RCATGY	1 cut(s)	167
PciI	ACATGT	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	4, 289
PscI	ACATGT	1 cut(s)	163
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	3 cut(s)	269, 393, 483
Sau96I	GGNCC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	2 cut(s)	159, 238
SetI	ASST	8 cut(s)	48, 55, 123, 159, 300, 358, 379, 571
SfaNI	GCATC	2 cut(s)	313, 535
SinI	GGWCC	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	2 cut(s)	252, 333
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	363
TaiI	ACGT	1 cut(s)	300
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	2 cut(s)	252, 333
TfiI	GAWTC	2 cut(s)	4, 289
Tru1I	TTAA	3 cut(s)	269, 393, 483
Tru9I	TTAA	3 cut(s)	269, 393, 483
TscAI	CASTG	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	17, 354
TspGWI	ACGGA	2 cut(s)	197, 287
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	80
XceI	RCATGY	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.