RchiOBHm_Chr1g0381511

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015063
Physical Location & Seq
Reverse (-)
66836983 .. 66838950
1968 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 678 bp
ATGGCTTGTATACGAAATGGCAGAAATGCCCTCCGTCAGATCATCAGAGACACTCACAACGTCGTCCATTCTTCCGAGTCGGAGCGCATGATGAATCCTCTGGTTTTCGCTTGCCAAGGAGTTCGGCATAGGAAATTGGAAGTGATTTTGACGACGAATGTGGATAAGCTCGGCAAGGCCGGTGAGACTGTGAAGGTTGCGCCGGGGCATTTCCGCAACCACTTGATGCCGAAATTGCTTGCTGTACCCAACATTGACAAGTATGCCTATCTCATAAGACAGCAGCGAAAGAATGCCCCCCTGGAAGAAGAGGAGGAGAAGGAGGAGGTTAAAGTGGTTACTGTGTCCGAGGAAGTTAAGATGAAAGAATATGAAAAGGCAGCGAAGCGTCTGGATAATGCTCGTCTGGTATTGCGGAGGAACATTAATCTTGAAAAGTTCAGGACACGTGCAACAAAGGAAGACCCTATAGAATTGCGTTCTACTGTGACCAAGGAGGATATTGTGGCTGAGGTGGCAAGGCAGCTTTCTATAGGCTTAGAACCTGAGAACGTGCATCTACCATCTCCATTGTCAACTGTAGGAGAGTATGAGGTACCACTGCGCCTTCCGAGATCCATCCCTTTGCCGGCAGGGAAGGTTCATTGGACACTTAATGTTAAAATCCGATGCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

225

Amino Acids

25.72

Weight (kDa)

9.53

Isoelectric Point (pI)

57.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L9_N PF01281 47 - 83 6.5e-13 Ribosomal protein L9, N-terminal domain
Ribosomal_L9_C PF03948 158 - 206 2.6e-06 Ribosomal protein L9, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53070
fragaria_vesca FvH4_7g32000
malus_domestica MD07G1293600.v1.1
prunus_persica Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1
pyrus_communis pycom07g26640
rosa_chinensis RchiOBHm_Chr1g0381511
rosa_laevigata RLG00000026226
rosa_roxburghii Rroxscaffold_4G00278600
rosa_rugosa Rorug01G0429100
rosa_samantha Rh1AG452300 Rh1BG409600 Rh1CG424100 Rh1DG440900
rosa_wichuraiana Rw1G039490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 673
Acc65I GGTACC 1 cut(s) 595
AccB1I GGYRCC 1 cut(s) 595
AccI GTMKAC 1 cut(s) 10
AciI CCGC 2 cut(s) 214, 415
AclWI GGATC 1 cut(s) 609
AcvI CACGTG 1 cut(s) 449
AfaI GTAC 2 cut(s) 246, 597
AfiI CCNNNNNNNGG 1 cut(s) 628
AflIII ACRYGT 1 cut(s) 446
AgsI TTSAA 1 cut(s) 434
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 2 cut(s) 169, 526
AluI AGCT 2 cut(s) 169, 526
Alw26I GTCTC 2 cut(s) 42, 179
AlwI GGATC 1 cut(s) 609
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 3 cut(s) 283, 380, 523
AseI ATTAAT 1 cut(s) 426
Asp718I GGTACC 1 cut(s) 595
AspLEI GCGC 4 cut(s) 87, 202, 606, 674
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 194
BanI GGYRCC 1 cut(s) 595
BbrPI CACGTG 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 468
BbvCI CCTCAGC 1 cut(s) 510
BbvI GCAGC 3 cut(s) 295, 392, 535
BccI CCATC 2 cut(s) 571, 626
BciT130I CCWGG 1 cut(s) 302
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 42, 179
BfmI CTRYAG 3 cut(s) 468, 531, 579
BisI GCNGC 3 cut(s) 284, 381, 524
BlsI GCNGC 3 cut(s) 285, 382, 525
Bme1390I CCNGG 2 cut(s) 204, 302
BmiI GGNNCC 1 cut(s) 597
BmrFI CCNGG 2 cut(s) 204, 302
BmsI GCATC 3 cut(s) 216, 565, 659
BpiI GAAGAC 1 cut(s) 468
Bpu10I CCTNAGC 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 449
BsaJI CCNNGG 5 cut(s) 115, 203, 300, 348, 492
Bsc4I CCNNNNNNNGG 1 cut(s) 628
Bse118I RCCGGY 2 cut(s) 179, 628
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 5 cut(s) 115, 203, 300, 348, 492
BseGI GGATG 1 cut(s) 618
BseLI CCNNNNNNNGG 1 cut(s) 628
BseMII CTCAG 2 cut(s) 501, 537
BseRI GAGGAG 3 cut(s) 326, 329, 338
BseXI GCAGC 3 cut(s) 295, 392, 535
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 595
BsiSI CCGG 3 cut(s) 180, 203, 629
BslI CCNNNNNNNGG 1 cut(s) 628
BsmAI GTCTC 2 cut(s) 42, 179
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 1 cut(s) 179
Bsp143I GATC 2 cut(s) 39, 614
BspACI CCGC 2 cut(s) 214, 415
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 502, 538
BspLI GGNNCC 1 cut(s) 597
BspPI GGATC 1 cut(s) 609
BspT107I GGYRCC 1 cut(s) 595
BsrFI RCCGGY 2 cut(s) 179, 628
BssAI RCCGGY 2 cut(s) 179, 628
BssECI CCNNGG 5 cut(s) 115, 203, 300, 348, 492
BssMI GATC 2 cut(s) 39, 614
BssNAI GTATAC 1 cut(s) 11
BssT1I CCWWGG 2 cut(s) 115, 492
Bst1107I GTATAC 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 4 cut(s) 190, 343, 487, 580
Bst6I CTCTTC 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 449
BstC8I GCNNGC 3 cut(s) 112, 240, 630
BstDEI CTNAG 3 cut(s) 510, 538, 546
BstF5I GGATG 1 cut(s) 618
BstHHI GCGC 4 cut(s) 87, 202, 606, 674
BstKTI GATC 2 cut(s) 42, 617
BstMAI GTCTC 2 cut(s) 42, 179
BstMBI GATC 2 cut(s) 39, 614
BstMWI GCNNNNNNNGC 2 cut(s) 235, 515
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 202, 300
BstSFI CTRYAG 3 cut(s) 468, 531, 579
BstV1I GCAGC 3 cut(s) 295, 392, 535
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 614
BstYI RGATCY 1 cut(s) 614
BstZ17I GTATAC 1 cut(s) 11
BsuRI GGCC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 618
BtsI GCAGTG 1 cut(s) 599
BtsIMutI CAGTG 1 cut(s) 599
Cac8I GCNNGC 3 cut(s) 112, 240, 630
CfoI GCGC 4 cut(s) 87, 202, 606, 674
Cfr10I RCCGGY 2 cut(s) 179, 628
CseI GACGC 1 cut(s) 377
Csp6I GTAC 2 cut(s) 245, 596
CviAII CATG 1 cut(s) 88
CviJI RGCY 6 cut(s) 5, 169, 179, 509, 526, 537
CviKI_1 RGCY 6 cut(s) 5, 169, 179, 509, 526, 537
CviQI GTAC 2 cut(s) 245, 596
DdeI CTNAG 3 cut(s) 510, 538, 546
DpnI GATC 2 cut(s) 41, 616
DpnII GATC 2 cut(s) 39, 614
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco130I CCWWGG 2 cut(s) 115, 492
Eco72I CACGTG 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 2 cut(s) 115, 492
ErhI CCWWGG 2 cut(s) 115, 492
FaeI CATG 1 cut(s) 91
FatI CATG 1 cut(s) 87
FblI GTMKAC 1 cut(s) 10
Fnu4HI GCNGC 3 cut(s) 284, 381, 524
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 3 cut(s) 284, 381, 524
FspAI RTGCGCAY 1 cut(s) 673
FspI TGCGCA 1 cut(s) 673
GlaI GCGC 4 cut(s) 86, 201, 605, 673
GluI GCNGC 3 cut(s) 284, 381, 524
HaeIII GGCC 1 cut(s) 179
HapII CCGG 3 cut(s) 180, 203, 629
HgaI GACGC 1 cut(s) 377
HhaI GCGC 4 cut(s) 87, 202, 606, 674
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 4 cut(s) 85, 200, 604, 672
HinP1I GCGC 4 cut(s) 85, 200, 604, 672
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HinfI GANTC 2 cut(s) 77, 94
HpaII CCGG 3 cut(s) 180, 203, 629
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 2 cut(s) 11, 576
Hpy188I TCNGA 7 cut(s) 39, 47, 76, 82, 349, 612, 668
Hpy188III TCNNGA 3 cut(s) 392, 431, 442
Hpy8I GTNNAC 2 cut(s) 11, 576
Hpy99I CGWCG 2 cut(s) 65, 157
HpyAV CCTTC 4 cut(s) 187, 313, 617, 631
HpyCH4III ACNGT 4 cut(s) 190, 343, 487, 580
HpyCH4IV ACGT 3 cut(s) 60, 448, 552
HpyCH4V TGCA 2 cut(s) 452, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 515
HpyF3I CTNAG 3 cut(s) 510, 538, 546
HpySE526I ACGT 3 cut(s) 60, 448, 552
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 4 cut(s) 85, 200, 604, 672
KpnI GGTACC 1 cut(s) 599
KroI GCCGGC 1 cut(s) 628
KroNI GCCGGC 1 cut(s) 630
Kzo9I GATC 2 cut(s) 39, 614
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 3 cut(s) 295, 392, 535
LweI GCATC 3 cut(s) 216, 565, 659
MaeII ACGT 3 cut(s) 60, 448, 552
MaeIII GTNAC 2 cut(s) 337, 487
MalI GATC 2 cut(s) 41, 616
MboI GATC 2 cut(s) 39, 614
MboII GAAGA 4 cut(s) 63, 317, 320, 473
MflI RGATCY 1 cut(s) 614
MluCI AATT 3 cut(s) 134, 233, 473
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 60
MroNI GCCGGC 1 cut(s) 628
MseI TTAA 5 cut(s) 330, 357, 426, 654, 660
MspI CCGG 3 cut(s) 180, 203, 629
MspR9I CCNGG 2 cut(s) 204, 302
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 2 cut(s) 235, 515
NaeI GCCGGC 1 cut(s) 630
NciI CCSGG 1 cut(s) 204
NdeII GATC 2 cut(s) 39, 614
NgoMIV GCCGGC 1 cut(s) 628
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 597
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 487
NsbI TGCGCA 1 cut(s) 673
PctI GAATGC 1 cut(s) 298
PdiI GCCGGC 1 cut(s) 630
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 3 cut(s) 285, 382, 525
PleI GAGTC 1 cut(s) 85
PmaCI CACGTG 1 cut(s) 449
PmlI CACGTG 1 cut(s) 449
PpsI GAGTC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 449
PshBI ATTAAT 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 300
PspCI CACGTG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 597
PsuI RGATCY 1 cut(s) 614
RsaI GTAC 2 cut(s) 246, 597
RsaNI GTAC 2 cut(s) 245, 596
SaqAI TTAA 5 cut(s) 330, 357, 426, 654, 660
SatI GCNGC 3 cut(s) 284, 381, 524
Sau3AI GATC 2 cut(s) 39, 614
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 204, 302
SfaNI GCATC 3 cut(s) 216, 565, 659
SfcI CTRYAG 3 cut(s) 468, 531, 579
Sse9I AATT 3 cut(s) 134, 233, 473
SsiI CCGC 2 cut(s) 214, 415
StyD4I CCNGG 2 cut(s) 202, 300
StyI CCWWGG 2 cut(s) 115, 492
TaaI ACNGT 4 cut(s) 190, 343, 487, 580
TaiI ACGT 3 cut(s) 63, 451, 555
TasI AATT 3 cut(s) 134, 233, 473
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 5 cut(s) 330, 357, 426, 654, 660
Tru9I TTAA 5 cut(s) 330, 357, 426, 654, 660
TscAI CASTG 1 cut(s) 606
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 3 cut(s) 283, 380, 523
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 4 cut(s) 107, 377, 387, 632
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 606
VspI ATTAAT 1 cut(s) 426
XmiI GTMKAC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.