Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0016627

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCAGACATCTATAATGCTAAGGTGTGCCAGTTTTATGTTGTTTATGGTCTGGACGCTGTGCATATCATCGTCTCTGGCGTGTACTGAAAAGCAGAAGCCGATAGGGTATGAGCAAAAATCCATGAAGGAGAGGTACGAAAGGTGGCTGACAAAATTTGACCGAAGATACAAGAATAGAGAGGAGTGGGAATATCGTTTCGGAATTTTCCAGTCCAACGTTCAGCTTGTTGATTTTATAAACTCTCAAAACCTGTCATACAAACTCACTGACAACAAATTTGCAGACATGACAAACTTAGAGTTTACAAGAACCCACTTGGGTTTCCAAGCTGGTAGAAATCCAAAGACGAAGTTCAGGTATGAGTGGAAGGACTTGCCAACTACAGTGGATTGGAGAAAGAATGGGAGCGTAACTCCGGTCAGGGACCAAGGCCGATGTGGTAGCTGTTGGGCATTCTCTGCAGTTGCCGCTGTGGAAGGCCTTCACGAAATCAATACCGGAAAACTGGTGTCACTCTCGGAACAAGAGCTAGTGGACTGTGACGTAAATACCGGGAACCAAGGTTGCAGTGGTGGATACATGGAAAATGCATTTGATTACATAAGAAAGCATGGACTCACCACTCAAGAAGATTATCCATACACAGGATCAGATGGCACCTGCAATAAAGCTAAACAGAAAAAATATGCTGTGAAAATAGGCGGCTATGAAACAGTACCTGATAATGATGAAAAAAGCTTACAAGCTGCAGTTGCTCATCAACCTGTCTCGGTTGCAATTGACGCGGGTGGTTTTGCTATGCAACTCTACTCTTCCGGTATCTTCACTGGCCTGCTATGTGGTAAGAGTCTCAACCATGGAGTGACAGCAGTCGGATATGGTGAAGAAAATGGTAACAAGTACTGGATTGTGAAAAACTCTTGGGGTCCTAACTGGGGTGAATCTGGTTATATCAGAATGACACGTGATTCTATTGATAAGGAAGGCGCTTGCGGCATTGCTATGATGTCAAGCTACCCTGTTAAGTCTCGAAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

347

Amino Acids

39.2

Weight (kDa)

8.54

Isoelectric Point (pI)

27.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	46 - 102	4.4e-14	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	126 - 342	6.9e-85	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06260
fragaria_vesca	FvH4_7g08420
malus_domestica	MD09G1241000.v1.1
prunus_persica	Prupe.3G125700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c20g0500241
rosa_laevigata	RLG00000028996
rosa_multiflora	Rmu_sc0010800.1_g000009
rosa_roxburghii	Rroxscaffold_4G00311040
rosa_rugosa	Rorug01G0165300 Rorug06G0126100
rosa_samantha	Rh1AG180400 Rh1BG148600 Rh1CG167300
rosa_wichuraiana	Rw1G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AarI	CACCTGC	1 cut(s)	671
Acc36I	ACCTGC	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	659
AccII	CGCG	1 cut(s)	788
AciI	CCGC	4 cut(s)	471, 705, 788, 996
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	1 cut(s)	658
AcsI	RAATTY	3 cut(s)	155, 204, 278
AcvI	CACGTG	1 cut(s)	968
AfaI	GTAC	4 cut(s)	85, 137, 720, 905
AfiI	CCNNNNNNNGG	2 cut(s)	647, 938
AflIII	ACRYGT	1 cut(s)	965
AluBI	AGCT	8 cut(s)	226, 332, 447, 532, 674, 741, 749, 1017
AluI	AGCT	8 cut(s)	226, 332, 447, 532, 674, 741, 749, 1017
Alw26I	GTCTC	4 cut(s)	78, 775, 857, 1035
AlwI	GGATC	1 cut(s)	658
AlwNI	CAGNNNCTG	1 cut(s)	722
AoxI	GGCC	3 cut(s)	433, 481, 832
ApeKI	GCWGC	1 cut(s)	749
ApoI	RAATTY	3 cut(s)	155, 204, 278
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
Asp700I	GAANNNNTTC	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	992
AspS9I	GGNCC	2 cut(s)	427, 929
AsuC2I	CCSGG	1 cut(s)	556
AsuHPI	GGTGA	3 cut(s)	613, 896, 953
AvaII	GGWCC	2 cut(s)	427, 929
BanI	GGYRCC	1 cut(s)	659
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BbrPI	CACGTG	1 cut(s)	968
BbvI	GCAGC	1 cut(s)	736
BccI	CCATC	1 cut(s)	650
BciVI	GTATCC	1 cut(s)	572
BcnI	CCSGG	1 cut(s)	556
BcoDI	GTCTC	4 cut(s)	78, 775, 857, 1035
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	3 cut(s)	384, 462, 750
BfoI	RGCGCY	1 cut(s)	993
BfuAI	ACCTGC	1 cut(s)	671
BfuI	GTATCC	1 cut(s)	572
BisI	GCNGC	4 cut(s)	471, 706, 750, 997
BlsI	GCNGC	4 cut(s)	472, 707, 751, 998
BmcAI	AGTACT	1 cut(s)	905
Bme1390I	CCNGG	1 cut(s)	556
Bme18I	GGWCC	2 cut(s)	427, 929
BmgT120I	GGNCC	2 cut(s)	427, 929
BmiI	GGNNCC	4 cut(s)	428, 560, 661, 930
BmrFI	CCNGG	1 cut(s)	556
BmrI	ACTGGG	1 cut(s)	946
BmuI	ACTGGG	1 cut(s)	946
BoxI	GACNNNNGTC	1 cut(s)	872
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	612
BpuMI	CCSGG	1 cut(s)	556
BsaAI	YACGTR	1 cut(s)	968
BsaJI	CCNNGG	3 cut(s)	430, 562, 859
BsaWI	WCCGGW	3 cut(s)	418, 500, 818
Bsc4I	CCNNNNNNNGG	2 cut(s)	647, 938
Bse1I	ACTGG	6 cut(s)	30, 211, 513, 835, 911, 941
Bse3DI	GCAATG	1 cut(s)	999
BseDI	CCNNGG	3 cut(s)	430, 562, 859
BseLI	CCNNNNNNNGG	2 cut(s)	647, 938
BseMI	GCAATG	1 cut(s)	999
BseNI	ACTGG	6 cut(s)	30, 211, 513, 835, 911, 941
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	736
Bsh1236I	CGCG	1 cut(s)	788
BshFI	GGCC	3 cut(s)	435, 483, 834
BshNI	GGYRCC	1 cut(s)	659
BsiSI	CCGG	4 cut(s)	419, 501, 555, 819
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	2 cut(s)	647, 938
BsmAI	GTCTC	4 cut(s)	78, 775, 857, 1035
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	3 cut(s)	435, 483, 834
Bsp143I	GATC	1 cut(s)	650
Bsp19I	CCATGG	1 cut(s)	859
BspACI	CCGC	4 cut(s)	471, 705, 788, 996
BspANI	GGCC	3 cut(s)	435, 483, 834
BspFNI	CGCG	1 cut(s)	788
BspLI	GGNNCC	4 cut(s)	428, 560, 661, 930
BspMAI	CTGCAG	2 cut(s)	466, 754
BspMI	ACCTGC	1 cut(s)	671
BspPI	GGATC	1 cut(s)	658
BspT107I	GGYRCC	1 cut(s)	659
BsrDI	GCAATG	1 cut(s)	999
BsrI	ACTGG	6 cut(s)	30, 211, 513, 835, 911, 941
BssECI	CCNNGG	3 cut(s)	430, 562, 859
BssMI	GATC	1 cut(s)	650
BssT1I	CCWWGG	3 cut(s)	430, 562, 859
Bst4CI	ACNGT	3 cut(s)	388, 542, 718
Bst6I	CTCTTC	1 cut(s)	820
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	968
BstC8I	GCNNGC	2 cut(s)	836, 994
BstDEI	CTNAG	2 cut(s)	20, 298
BstDSI	CCRYGG	1 cut(s)	859
BstFNI	CGCG	1 cut(s)	788
BstH2I	RGCGCY	1 cut(s)	993
BstHHI	GCGC	1 cut(s)	992
BstKTI	GATC	1 cut(s)	653
BstMAI	GTCTC	4 cut(s)	78, 775, 857, 1035
BstMBI	GATC	1 cut(s)	650
BstMWI	GCNNNNNNNGC	5 cut(s)	461, 470, 755, 785, 996
BstPAI	GACNNNNGTC	1 cut(s)	872
BstSCI	CCNGG	1 cut(s)	554
BstSFI	CTRYAG	3 cut(s)	384, 462, 750
BstUI	CGCG	1 cut(s)	788
BstV1I	GCAGC	1 cut(s)	736
BsuI	GTATCC	1 cut(s)	572
BsuRI	GGCC	3 cut(s)	435, 483, 834
BtgI	CCRYGG	1 cut(s)	859
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	4 cut(s)	267, 393, 577, 828
BveI	ACCTGC	1 cut(s)	671
Cac8I	GCNNGC	2 cut(s)	836, 994
CaiI	CAGNNNCTG	1 cut(s)	722
CfoI	GCGC	1 cut(s)	992
Cfr13I	GGNCC	2 cut(s)	427, 929
CseI	GACGC	2 cut(s)	64, 794
Csp6I	GTAC	4 cut(s)	84, 136, 719, 904
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviAII	CATG	5 cut(s)	124, 289, 583, 614, 860
CviQI	GTAC	4 cut(s)	84, 136, 719, 904
DdeI	CTNAG	2 cut(s)	20, 298
DpnI	GATC	1 cut(s)	652
DpnII	GATC	1 cut(s)	650
Eam1104I	CTCTTC	1 cut(s)	820
EarI	CTCTTC	1 cut(s)	820
Eco130I	CCWWGG	3 cut(s)	430, 562, 859
Eco147I	AGGCCT	1 cut(s)	483
Eco47I	GGWCC	2 cut(s)	427, 929
Eco72I	CACGTG	1 cut(s)	968
EcoO109I	RGGNCCY	1 cut(s)	929
EcoT14I	CCWWGG	3 cut(s)	430, 562, 859
EcoT22I	ATGCAT	1 cut(s)	595
ErhI	CCWWGG	3 cut(s)	430, 562, 859
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	5 cut(s)	127, 292, 586, 617, 863
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	5 cut(s)	123, 288, 582, 613, 859
FauI	CCCGC	1 cut(s)	781
Fnu4HI	GCNGC	4 cut(s)	471, 706, 750, 997
Fsp4HI	GCNGC	4 cut(s)	471, 706, 750, 997
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	1 cut(s)	991
GluI	GCNGC	4 cut(s)	471, 706, 750, 997
HaeII	RGCGCY	1 cut(s)	993
HaeIII	GGCC	3 cut(s)	435, 483, 834
HapII	CCGG	4 cut(s)	419, 501, 555, 819
HgaI	GACGC	2 cut(s)	64, 794
HhaI	GCGC	1 cut(s)	992
Hin1II	CATG	5 cut(s)	127, 292, 586, 617, 863
Hin6I	GCGC	1 cut(s)	990
HinP1I	GCGC	1 cut(s)	990
HindIII	AAGCTT	1 cut(s)	739
HinfI	GANTC	4 cut(s)	618, 850, 944, 971
HpaII	CCGG	4 cut(s)	419, 501, 555, 819
HphI	GGTGA	3 cut(s)	613, 896, 953
Hpy166II	GTNNAC	3 cut(s)	84, 306, 538
Hpy188I	TCNGA	5 cut(s)	203, 523, 655, 878, 959
Hpy188III	TCNNGA	4 cut(s)	52, 488, 629, 1032
Hpy8I	GTNNAC	3 cut(s)	84, 306, 538
HpyAV	CCTTC	5 cut(s)	121, 364, 473, 494, 980
HpyCH4III	ACNGT	3 cut(s)	388, 542, 718
HpyCH4IV	ACGT	3 cut(s)	219, 546, 967
HpyF10VI	GCNNNNNNNGC	5 cut(s)	461, 470, 755, 785, 996
HpyF3I	CTNAG	2 cut(s)	20, 298
HpySE526I	ACGT	3 cut(s)	219, 546, 967
Hsp92II	CATG	5 cut(s)	127, 292, 586, 617, 863
HspAI	GCGC	1 cut(s)	990
Kzo9I	GATC	1 cut(s)	650
LmnI	GCTCC	1 cut(s)	408
Lsp1109I	GCAGC	1 cut(s)	736
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	3 cut(s)	219, 546, 967
MaeIII	GTNAC	5 cut(s)	412, 513, 542, 865, 896
MalI	GATC	1 cut(s)	652
MboI	GATC	1 cut(s)	650
MboII	GAAGA	5 cut(s)	177, 644, 807, 817, 899
MfeI	CAATTG	1 cut(s)	780
MluCI	AATT	4 cut(s)	155, 204, 278, 780
MlyI	GAGTC	2 cut(s)	612, 859
MmeI	TCCRAC	2 cut(s)	240, 856
MnlI	CCTC	2 cut(s)	126, 175
Mph1103I	ATGCAT	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	1 cut(s)	1026
MslI	CAYNNNNRTG	1 cut(s)	1004
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	4 cut(s)	419, 501, 555, 819
MspR9I	CCNGG	1 cut(s)	556
MunI	CAATTG	1 cut(s)	780
Mva1269I	GAATGC	1 cut(s)	455
MvnI	CGCG	1 cut(s)	788
MwoI	GCNNNNNNNGC	5 cut(s)	461, 470, 755, 785, 996
NciI	CCSGG	1 cut(s)	556
NcoI	CCATGG	1 cut(s)	859
NdeII	GATC	1 cut(s)	650
NlaIII	CATG	5 cut(s)	127, 292, 586, 617, 863
NlaIV	GGNNCC	4 cut(s)	428, 560, 661, 930
NmuCI	GTSAC	3 cut(s)	513, 542, 865
NsiI	ATGCAT	1 cut(s)	595
PaqCI	CACCTGC	1 cut(s)	671
PceI	AGGCCT	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PctI	GAATGC	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	944, 971
PkrI	GCNGC	4 cut(s)	472, 707, 751, 998
PleI	GAGTC	2 cut(s)	612, 858
PmaCI	CACGTG	1 cut(s)	968
PmlI	CACGTG	1 cut(s)	968
PpsI	GAGTC	2 cut(s)	612, 858
Ppu21I	YACGTR	1 cut(s)	968
PpuMI	RGGWCCY	1 cut(s)	929
PshAI	GACNNNNGTC	1 cut(s)	872
PsiI	TTATAA	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	929
PspCI	CACGTG	1 cut(s)	968
PspN4I	GGNNCC	4 cut(s)	428, 560, 661, 930
PspPI	GGNCC	2 cut(s)	427, 929
PspPPI	RGGWCCY	1 cut(s)	929
PstI	CTGCAG	2 cut(s)	466, 754
PstNI	CAGNNNCTG	1 cut(s)	722
RsaI	GTAC	4 cut(s)	85, 137, 720, 905
RsaNI	GTAC	4 cut(s)	84, 136, 719, 904
RseI	CAYNNNNRTG	1 cut(s)	1004
SaqAI	TTAA	1 cut(s)	1026
SatI	GCNGC	4 cut(s)	471, 706, 750, 997
Sau3AI	GATC	1 cut(s)	650
Sau96I	GGNCC	2 cut(s)	427, 929
ScaI	AGTACT	1 cut(s)	905
SchI	GAGTC	2 cut(s)	612, 859
ScrFI	CCNGG	1 cut(s)	556
SfcI	CTRYAG	3 cut(s)	384, 462, 750
SinI	GGWCC	2 cut(s)	427, 929
SmiMI	CAYNNNNRTG	1 cut(s)	1004
SmlI	CTYRAG	1 cut(s)	627
SmoI	CTYRAG	1 cut(s)	627
Sse9I	AATT	4 cut(s)	155, 204, 278, 780
SseBI	AGGCCT	1 cut(s)	483
SsiI	CCGC	4 cut(s)	471, 705, 788, 996
SspMI	CTAG	1 cut(s)	533
StuI	AGGCCT	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	554
StyI	CCWWGG	3 cut(s)	430, 562, 859
TaaI	ACNGT	3 cut(s)	388, 542, 718
TaiI	ACGT	3 cut(s)	222, 549, 970
TaqI	TCGA	1 cut(s)	1033
TaqII	GACCGA	1 cut(s)	177
TasI	AATT	4 cut(s)	155, 204, 278, 780
TatI	WGTACW	2 cut(s)	83, 903
TauI	GCSGC	3 cut(s)	473, 708, 999
TfiI	GAWTC	2 cut(s)	944, 971
Tru1I	TTAA	1 cut(s)	1026
Tru9I	TTAA	1 cut(s)	1026
TscAI	CASTG	4 cut(s)	274, 393, 577, 835
TseFI	GTSAC	3 cut(s)	513, 542, 865
TseI	GCWGC	1 cut(s)	749
Tsp45I	GTSAC	3 cut(s)	513, 542, 865
TspDTI	ATGAA	3 cut(s)	140, 726, 747
TspRI	CASTG	4 cut(s)	274, 393, 577, 835
VpaK11BI	GGWCC	2 cut(s)	427, 929
XapI	RAATTY	3 cut(s)	155, 204, 278
XcmI	CCANNNNNNNNNTGG	2 cut(s)	437, 569
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	1 cut(s)	533
ZrmI	AGTACT	1 cut(s)	905
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.