Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0016969

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCGGATTTGGAGATGAGTAGAGCCCGCTATCCATGGCGAGTGTTGGCATTTGATGCGAACGGCGTCATACAAGTTTTGGAGCATTCTGGTGGAGCCTTCGAAGAGCACGTGGTTCAGACTTGGGACAAATCGGATTCCCGAAGCCTAGGTGTGGTTGCCGCCTCTCTGAATGACCGGTCACTAGCTGTGGGTAGAAGAAATGGCACGGTTGAGGTTCGTGATCGTCTCAGTGGGGAGATCGGTCCAACCATCCCTCCTCTCACTAATGAGAGTGATCCTTTTGTGGGGCTGCATCTATTTACAAAGCAGCAGCCAGGATCATTTGGGTCATTGCTTAGTTGTACAGTTCAAGGAAATGCAAGGATAATATCTTTTGAAGTGGACAACTCTTCTAGGACTTTGCTACAATGGAAAGTGAGAGAGAATATCTTGTGTTGCAAGGTTGACGGGAGTGAACGTGTTTGTCTGTTCGGAGGGAAGAATGAAATGAATATATGGGATCTTGAATATAATGTCAAGTCTTGGCCAACAAAAGAGCATCCAATTCAGAATGGAAAACTTTGGTGGACATCTGCCACCTTTCTCACAAGAGATAATCCTCATACATTTGTGGTGGGCACCAACAACAATCAGGTTCATATCTACGATGCTCGCAAGAAGGTTGATGAGTTAAGTCCGTGCAAGATATATGACATAGAAAGCAGCTGTATAAAAAGGCTACCTAACCGTGACACTGCAATACAAGCTATTGCAGAAGGTGAAGATGGCTATACAGTTTATGCAGGCAATGATTGTGGTAATCTTGTTTCTTTGGATACACGCACAGGGAGAGTTTTGGGTTGCTTTCGGGGAATAGACACACTTTCTATAAAATCCTTGGCTAAGCACCACGAGCTTCCTGTGATTGCGTCTTGTGGAGATGACAGCTGTCTCAGCATTTGGGATACAAAGAGGCAAAAACTGCAATGTCGGATCCTTGTGCGTCCGACTATTCGTGTCACAAATGTTATTGTTGATCCCAACTTTTTTGAAAAGGATGGAGGCAAAAAGGGGAAAAGTCACAAAAGGTTCAGAAGTGATGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

363

Amino Acids

40.55

Weight (kDa)

8.24

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016969)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c30g0501231 RchiOBHm_Chr3g0452771 RchiOBHm_Chr3g0452851
rosa_laevigata	RLG00000025569
rosa_roxburghii	Rroxscaffold_6G00429830
rosa_rugosa	Rorug02G0643100
rosa_samantha	Rh3AG045600 Rh3AG045800 Rh3BG048000 Rh3BG048200 Rh3CG046500 Rh3CG046700 Rh3DG047100 Rh3DG047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	620
AciI	CCGC	3 cut(s)	5, 28, 162
AclWI	GGATC	6 cut(s)	272, 328, 510, 970, 983, 1013
AcoI	YGGCCR	1 cut(s)	527
AcvI	CACGTG	1 cut(s)	112
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	2 cut(s)	154, 287
AflIII	ACRYGT	1 cut(s)	460
AgeI	ACCGGT	1 cut(s)	177
AgsI	TTSAA	4 cut(s)	353, 380, 509, 1034
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	5 cut(s)	188, 708, 749, 898, 930
AluI	AGCT	5 cut(s)	188, 708, 749, 898, 930
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	233, 938
AlwI	GGATC	6 cut(s)	272, 328, 510, 970, 983, 1013
AoxI	GGCC	1 cut(s)	527
ApeKI	GCWGC	4 cut(s)	292, 310, 313, 705
AsiGI	ACCGGT	1 cut(s)	177
AspA2I	CCTAGG	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	773
AsuII	TTCGAA	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	245
AvrII	CCTAGG	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	529
BamHI	GGATCC	1 cut(s)	975
BanI	GGYRCC	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	893
BbrPI	CACGTG	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	4 cut(s)	279, 322, 325, 717
BccI	CCATC	3 cut(s)	260, 761, 1034
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	318
BciVI	GTATCC	2 cut(s)	811, 940
BcoDI	GTCTC	2 cut(s)	233, 938
BfaI	CTAG	3 cut(s)	149, 185, 396
BfuI	GTATCC	2 cut(s)	811, 940
BisI	GCNGC	5 cut(s)	162, 293, 311, 314, 706
BlnI	CCTAGG	1 cut(s)	148
BlpI	GCTNAGC	1 cut(s)	885
BlsI	GCNGC	5 cut(s)	163, 294, 312, 315, 707
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	3 cut(s)	97, 622, 977
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	5 cut(s)	46, 304, 550, 640, 1072
BoxI	GACNNNNGTC	1 cut(s)	930
Bpu1102I	GCTNAGC	1 cut(s)	885
Bpu14I	TTCGAA	1 cut(s)	102
BsaAI	YACGTR	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	3 cut(s)	35, 148, 879
BsaWI	WCCGGW	1 cut(s)	177
BsaXI	ACNNNNNCTCC	4 cut(s)	241, 271, 445, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 287
Bse118I	RCCGGY	1 cut(s)	177
Bse3DI	GCAATG	3 cut(s)	332, 796, 974
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	35, 148, 879
BseGI	GGATG	3 cut(s)	252, 541, 1045
BseLI	CCNNNNNNNGG	2 cut(s)	154, 287
BseMI	GCAATG	3 cut(s)	332, 796, 974
BseMII	CTCAG	2 cut(s)	244, 949
BseRI	GAGGAG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	623
BseXI	GCAGC	4 cut(s)	279, 322, 325, 717
BshFI	GGCC	1 cut(s)	529
BshNI	GGYRCC	1 cut(s)	620
BshTI	ACCGGT	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	154, 287
BsmAI	GTCTC	2 cut(s)	233, 938
BsmBI	CGTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	529
Bsp119I	TTCGAA	1 cut(s)	102
Bsp1286I	GDGCHC	3 cut(s)	28, 111, 623
Bsp1407I	TGTACA	1 cut(s)	344
Bsp143I	GATC	7 cut(s)	223, 240, 277, 320, 502, 975, 1018
Bsp1720I	GCTNAGC	1 cut(s)	885
Bsp19I	CCATGG	1 cut(s)	35
BspACI	CCGC	3 cut(s)	5, 28, 162
BspANI	GGCC	1 cut(s)	529
BspCNI	CTCAG	2 cut(s)	243, 948
BspLI	GGNNCC	3 cut(s)	97, 622, 977
BspPI	GGATC	6 cut(s)	272, 328, 510, 970, 983, 1013
BspQI	GCTCTTC	1 cut(s)	99
BspT104I	TTCGAA	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	620
BsrDI	GCAATG	3 cut(s)	332, 796, 974
BsrFI	RCCGGY	1 cut(s)	177
BsrGI	TGTACA	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	3 cut(s)	35, 148, 879
BssMI	GATC	7 cut(s)	223, 240, 277, 320, 502, 975, 1018
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	893
BssT1I	CCWWGG	3 cut(s)	35, 148, 879
Bst2BI	CACGAG	1 cut(s)	893
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	4 cut(s)	211, 349, 731, 778
Bst6I	CTCTTC	2 cut(s)	99, 397
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	2 cut(s)	56, 964
BstAUI	TGTACA	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	112
BstBI	TTCGAA	1 cut(s)	102
BstC8I	GCNNGC	3 cut(s)	28, 655, 787
BstDEI	CTNAG	4 cut(s)	230, 338, 885, 935
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	252, 541, 1045
BstKTI	GATC	7 cut(s)	226, 243, 280, 323, 505, 978, 1021
BstMAI	GTCTC	2 cut(s)	233, 938
BstMBI	GATC	7 cut(s)	223, 240, 277, 320, 502, 975, 1018
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 746, 895, 936, 964
BstNI	CCWGG	1 cut(s)	318
BstPAI	GACNNNNGTC	1 cut(s)	930
BstSCI	CCNGG	1 cut(s)	316
BstSLI	GKGCMC	1 cut(s)	623
BstV1I	GCAGC	4 cut(s)	279, 322, 325, 717
BstX2I	RGATCY	2 cut(s)	502, 975
BstYI	RGATCY	2 cut(s)	502, 975
BsuI	GTATCC	2 cut(s)	811, 940
BsuRI	GGCC	1 cut(s)	529
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	3 cut(s)	252, 541, 1045
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	2 cut(s)	238, 735
Cac8I	GCNNGC	3 cut(s)	28, 655, 787
Cfr10I	RCCGGY	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	245
CseI	GACGC	3 cut(s)	55, 900, 974
Csp6I	GTAC	1 cut(s)	345
CspAI	ACCGGT	1 cut(s)	177
CspCI	CAANNNNNGTGG	2 cut(s)	778, 813
CviAII	CATG	1 cut(s)	36
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	4 cut(s)	230, 338, 885, 935
DpnI	GATC	7 cut(s)	225, 242, 279, 322, 504, 977, 1020
DpnII	GATC	7 cut(s)	223, 240, 277, 320, 502, 975, 1018
EaeI	YGGCCR	1 cut(s)	527
Eam1104I	CTCTTC	2 cut(s)	99, 397
EarI	CTCTTC	2 cut(s)	99, 397
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	35, 148, 879
Eco24I	GRGCYC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	245
Eco72I	CACGTG	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	3 cut(s)	35, 148, 879
EcoT22I	ATGCAT	1 cut(s)	1087
EcoT38I	GRGCYC	1 cut(s)	28
ErhI	CCWWGG	3 cut(s)	35, 148, 879
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	1 cut(s)	39
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	1 cut(s)	35
FauI	CCCGC	1 cut(s)	35
Fnu4HI	GCNGC	5 cut(s)	162, 293, 311, 314, 706
FokI	GGATG	3 cut(s)	239, 528, 1052
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	5 cut(s)	162, 293, 311, 314, 706
FspBI	CTAG	3 cut(s)	149, 185, 396
GluI	GCNGC	5 cut(s)	162, 293, 311, 314, 706
HaeIII	GGCC	1 cut(s)	529
HapII	CCGG	1 cut(s)	178
HgaI	GACGC	3 cut(s)	55, 900, 974
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	1 cut(s)	773
Hpy166II	GTNNAC	4 cut(s)	385, 448, 458, 570
Hpy188I	TCNGA	8 cut(s)	120, 136, 171, 476, 552, 975, 990, 1076
Hpy188III	TCNNGA	4 cut(s)	141, 221, 506, 1089
Hpy8I	GTNNAC	4 cut(s)	385, 448, 458, 570
HpyAV	CCTTC	3 cut(s)	109, 655, 752
HpyCH4III	ACNGT	4 cut(s)	211, 349, 731, 778
HpyCH4IV	ACGT	2 cut(s)	111, 460
HpyCH4V	TGCA	9 cut(s)	295, 362, 441, 684, 740, 755, 785, 967, 1085
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 746, 895, 936, 964
HpyF3I	CTNAG	4 cut(s)	230, 338, 885, 935
HpySE526I	ACGT	2 cut(s)	111, 460
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	39
Kzo9I	GATC	7 cut(s)	223, 240, 277, 320, 502, 975, 1018
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	82, 95
LpnPI	CCDG	8 cut(s)	75, 191, 303, 330, 620, 771, 813, 915
Lsp1109I	GCAGC	4 cut(s)	279, 322, 325, 717
LweI	GCATC	5 cut(s)	46, 304, 550, 640, 1072
MaeI	CTAG	3 cut(s)	149, 185, 396
MaeII	ACGT	2 cut(s)	111, 460
MaeIII	GTNAC	4 cut(s)	180, 731, 1000, 1061
MalI	GATC	7 cut(s)	225, 242, 279, 322, 504, 977, 1020
MboI	GATC	7 cut(s)	223, 240, 277, 320, 502, 975, 1018
MboII	GAAGA	5 cut(s)	116, 210, 384, 493, 776
MflI	RGATCY	2 cut(s)	502, 975
MhlI	GDGCHC	3 cut(s)	28, 111, 623
MlsI	TGGCCA	1 cut(s)	529
MluCI	AATT	1 cut(s)	546
MluNI	TGGCCA	1 cut(s)	529
MmeI	TCCRAC	3 cut(s)	272, 953, 1013
MnlI	CCTC	8 cut(s)	175, 208, 267, 270, 470, 612, 948, 1037
Mox20I	TGGCCA	1 cut(s)	529
Mph1103I	ATGCAT	1 cut(s)	1087
MscI	TGGCCA	1 cut(s)	529
MseI	TTAA	1 cut(s)	674
MslI	CAYNNNNRTG	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	529
MspA1I	CMGCKG	2 cut(s)	708, 930
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	318
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	5 cut(s)	56, 746, 895, 936, 964
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	7 cut(s)	223, 240, 277, 320, 502, 975, 1018
NlaIII	CATG	1 cut(s)	39
NlaIV	GGNNCC	3 cut(s)	97, 622, 977
NmuCI	GTSAC	4 cut(s)	180, 731, 1000, 1061
NsiI	ATGCAT	1 cut(s)	1087
NspV	TTCGAA	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	137
PinAI	ACCGGT	1 cut(s)	177
PkrI	GCNGC	5 cut(s)	163, 294, 312, 315, 707
PmaCI	CACGTG	1 cut(s)	112
PmlI	CACGTG	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	112
PshAI	GACNNNNGTC	1 cut(s)	930
Psp6I	CCWGG	1 cut(s)	316
PspCI	CACGTG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	3 cut(s)	97, 622, 977
PspPI	GGNCC	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	502, 975
PvuII	CAGCTG	2 cut(s)	708, 930
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
RseI	CAYNNNNRTG	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	674
SatI	GCNGC	5 cut(s)	162, 293, 311, 314, 706
Sau3AI	GATC	7 cut(s)	223, 240, 277, 320, 502, 975, 1018
Sau96I	GGNCC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	3 cut(s)	28, 111, 623
SfaNI	GCATC	5 cut(s)	46, 304, 550, 640, 1072
SfuI	TTCGAA	1 cut(s)	102
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	546
SsiI	CCGC	3 cut(s)	5, 28, 162
SspMI	CTAG	3 cut(s)	149, 185, 396
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	3 cut(s)	35, 148, 879
TaaI	ACNGT	4 cut(s)	211, 349, 731, 778
TaiI	ACGT	2 cut(s)	114, 463
TaqI	TCGA	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	546
TatI	WGTACW	1 cut(s)	344
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	674
Tru9I	TTAA	1 cut(s)	674
TscAI	CASTG	2 cut(s)	238, 742
TseFI	GTSAC	4 cut(s)	180, 731, 1000, 1061
TseI	GCWGC	4 cut(s)	292, 310, 313, 705
Tsp45I	GTSAC	4 cut(s)	180, 731, 1000, 1061
TspDTI	ATGAA	3 cut(s)	501, 506, 629
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	2 cut(s)	238, 742
VpaK11BI	GGWCC	1 cut(s)	245
XmaJI	CCTAGG	1 cut(s)	148
XspI	CTAG	3 cut(s)	149, 185, 396
Zsp2I	ATGCAT	1 cut(s)	1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.