Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0016969

Physical Location & Seq

Genomic Coordinates Reverse (-)

3199086 .. 3206074

Gene Structure 6989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG047600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAGATGAGTAGAGCCCGCTATCCATGGCGAGTGTTGACATTTGATGAGAACGGCGGCATACAACAAGTTTTGGAGCATTCTGGTGGAGCCTTCGAAGACCATGTGGTTCAGACTTGGGACGAATCGGATTCCCGAAGACTAGGTGTGGTTGCCGCCTCTATGAATGACCGGTCACTAGCTGTGGCTAGAAGAAATGGCACAGTTGAGGTTCGTGATCGTCTTAGCGGGCAGATCGGTCTCACCTTCCCTCATCTCACTAATGAGAGTGATCCTTTTGTGGGGCTACACCTATTTACAAAGCAGCAGCCAGGAGCATTTGGGTCATTGCTTAGTTGTACAGTTCAAGGAAATGCAAGGATAATATCTTTTGAAGTGGACAACTCTTCTAGGACTTTGCAGCAGTGGAAAGTGAGAGAGGATGTCTTGTGTTGCAAGGTTGACGGGAGTGAACGTGTTTGTCTATTCGGAGGGAAGAATGAAATGAATATATGGGATCTTGAATATAATGTGAAGTCTTGGCCAACAAAAGAGCGTCCAATTCAGAGTAGAAAACTTTGGTGGACATCTGCCACCTTTCTGACAAGAGATAATCCTCATGTATTTGTGGCGGGCACCAACAAAAATCAGGTTCATATTTATGATGCTCGAGAGGATATTGATGAGCCTTGCAACATATATGACATACAGAGCAGCTGTCTAAAAAGGCTACAGAACCGTGACACTCCAATTCGAGCTATTGCTGAAGATAAAGATGGTTATACGGTTTATGCAGGCAACGATTGTGGTAATCTTGTTTCTTTGGATACACGCACAGGGAAAGTTTTGTGTTGCTTTGAGGGAATAGACACACTTTGTATAAAATCCTTGGCTAAGGACCACGAGCTACCAATGATTGCATCTTGTGGTGATGACGGCTTTCTCAGCATTTGGGATACAAAGGGGCAAAAACTGCAGTGTCAGATCCATGTGCGTCCGCCAATTCGTCTTACAAATGTTATTGTTGATTCCAACTTTTTTGAAAAGGATGGAGACAAAAAGGGGAAAAGTCACAAAAGGTTCAGAAGTGATGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

40.58

Weight (kDa)

6.33

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	110 - 316	6.8e-06	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	200 - 318	5.1e-06	CDC20/Fizzy WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016969)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c30g0501231 RchiOBHm_Chr3g0452771 RchiOBHm_Chr3g0452851
rosa_laevigata	RLG00000025569
rosa_roxburghii	Rroxscaffold_6G00429830
rosa_rugosa	Rorug02G0643100
rosa_samantha	Rh3AG045600 Rh3AG045800 Rh3BG048000 Rh3BG048200 Rh3CG046500 Rh3CG046700 Rh3DG047100 Rh3DG047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	614
AciI	CCGC	6 cut(s)	19, 57, 156, 228, 611, 977
AclWI	GGATC	3 cut(s)	266, 504, 958
AcoI	YGGCCR	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	765
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	454
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	4 cut(s)	347, 374, 503, 1022
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	4 cut(s)	182, 696, 737, 886
AluI	AGCT	4 cut(s)	182, 696, 737, 886
Alw26I	GTCTC	2 cut(s)	245, 1026
AlwI	GGATC	3 cut(s)	266, 504, 958
Ama87I	CYCGRG	1 cut(s)	648
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	4 cut(s)	304, 307, 400, 693
AsiGI	ACCGGT	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	877
AsuHPI	GGTGA	2 cut(s)	235, 920
AsuII	TTCGAA	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	648
AvaII	GGWCC	1 cut(s)	877
BaeGI	GKGCMC	1 cut(s)	617
BalI	TGGCCA	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	19
BauI	CACGAG	1 cut(s)	881
BbsI	GAAGAC	2 cut(s)	105, 145
BbvI	GCAGC	4 cut(s)	316, 319, 412, 705
BccI	CCATC	2 cut(s)	749, 1022
BceAI	ACGGC	2 cut(s)	70, 931
BciT130I	CCWGG	1 cut(s)	312
BciVI	GTATCC	2 cut(s)	799, 928
BcoDI	GTCTC	2 cut(s)	245, 1026
BfaI	CTAG	4 cut(s)	143, 179, 189, 390
BfmI	CTRYAG	2 cut(s)	710, 953
BfuI	GTATCC	2 cut(s)	799, 928
BisI	GCNGC	6 cut(s)	58, 156, 305, 308, 401, 694
BlsI	GCNGC	6 cut(s)	59, 157, 306, 309, 402, 695
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	877
BmeT110I	CYCGRG	1 cut(s)	648
BmgT120I	GGNCC	1 cut(s)	877
BmiI	GGNNCC	2 cut(s)	91, 616
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	3 cut(s)	634, 908, 1060
BpiI	GAAGAC	2 cut(s)	105, 145
Bpu10I	CCTNAGC	1 cut(s)	873
Bpu14I	TTCGAA	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	26, 867
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse118I	RCCGGY	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	26, 867
BseGI	GGATG	2 cut(s)	427, 1033
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	937
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	4 cut(s)	316, 319, 412, 705
BshFI	GGCC	1 cut(s)	523
BshNI	GGYRCC	1 cut(s)	614
BshTI	ACCGGT	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	648
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	245, 1026
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	523
Bso31I	GGTCTC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	648
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	2 cut(s)	19, 617
Bsp1407I	TGTACA	1 cut(s)	338
Bsp143I	GATC	5 cut(s)	217, 234, 271, 496, 963
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	6 cut(s)	19, 57, 156, 228, 611, 977
BspANI	GGCC	1 cut(s)	523
BspCNI	CTCAG	1 cut(s)	936
BspLI	GGNNCC	2 cut(s)	91, 616
BspMAI	CTGCAG	1 cut(s)	957
BspPI	GGATC	3 cut(s)	266, 504, 958
BspT104I	TTCGAA	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	26, 867
BssMI	GATC	5 cut(s)	217, 234, 271, 496, 963
BssSI	CACGAG	1 cut(s)	881
BssT1I	CCWWGG	2 cut(s)	26, 867
Bst2BI	CACGAG	1 cut(s)	881
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	4 cut(s)	205, 343, 719, 766
Bst6I	CTCTTC	1 cut(s)	391
BstAPI	GCANNNNNTGC	1 cut(s)	952
BstAUI	TGTACA	1 cut(s)	338
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	4 cut(s)	19, 230, 613, 775
BstDEI	CTNAG	4 cut(s)	224, 332, 873, 923
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	427, 1033
BstKTI	GATC	5 cut(s)	220, 237, 274, 499, 966
BstMAI	GTCTC	2 cut(s)	245, 1026
BstMBI	GATC	5 cut(s)	217, 234, 271, 496, 963
BstMWI	GCNNNNNNNGC	2 cut(s)	924, 952
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	2 cut(s)	710, 953
BstSLI	GKGCMC	1 cut(s)	617
BstV1I	GCAGC	4 cut(s)	316, 319, 412, 705
BstV2I	GAAGAC	2 cut(s)	105, 145
BstX2I	RGATCY	2 cut(s)	496, 963
BstYI	RGATCY	2 cut(s)	496, 963
BsuI	GTATCC	2 cut(s)	799, 928
BsuRI	GGCC	1 cut(s)	523
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	427, 1033
BtsI	GCAGTG	2 cut(s)	410, 962
BtsIMutI	CAGTG	2 cut(s)	410, 962
Cac8I	GCNNGC	4 cut(s)	19, 230, 613, 775
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	877
CseI	GACGC	2 cut(s)	524, 962
Csp6I	GTAC	1 cut(s)	339
CspAI	ACCGGT	1 cut(s)	171
CspCI	CAANNNNNGTGG	2 cut(s)	766, 801
CviAII	CATG	4 cut(s)	27, 104, 599, 968
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	4 cut(s)	224, 332, 873, 923
DpnI	GATC	5 cut(s)	219, 236, 273, 498, 965
DpnII	GATC	5 cut(s)	217, 234, 271, 496, 963
EaeI	YGGCCR	1 cut(s)	521
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
EciI	GGCGGA	1 cut(s)	966
Eco130I	CCWWGG	2 cut(s)	26, 867
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	877
Eco57I	CTGAAG	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	648
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	2 cut(s)	26, 867
EcoT22I	ATGCAT	1 cut(s)	1075
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	2 cut(s)	26, 867
FaeI	CATG	4 cut(s)	30, 107, 602, 971
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	4 cut(s)	26, 103, 598, 967
FauI	CCCGC	3 cut(s)	26, 221, 604
Fnu4HI	GCNGC	6 cut(s)	58, 156, 305, 308, 401, 694
FokI	GGATG	2 cut(s)	434, 1040
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	6 cut(s)	58, 156, 305, 308, 401, 694
FspBI	CTAG	4 cut(s)	143, 179, 189, 390
GluI	GCNGC	6 cut(s)	58, 156, 305, 308, 401, 694
HaeIII	GGCC	1 cut(s)	523
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	2 cut(s)	524, 962
Hin1II	CATG	4 cut(s)	30, 107, 602, 971
HincII	GTYRAC	2 cut(s)	39, 442
HindII	GTYRAC	2 cut(s)	39, 442
HinfI	GANTC	3 cut(s)	125, 131, 1007
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	2 cut(s)	235, 920
Hpy166II	GTNNAC	5 cut(s)	39, 379, 442, 452, 564
Hpy188I	TCNGA	7 cut(s)	114, 130, 470, 546, 582, 963, 1064
Hpy188III	TCNNGA	5 cut(s)	135, 215, 500, 650, 1077
Hpy8I	GTNNAC	5 cut(s)	39, 379, 442, 452, 564
HpyAV	CCTTC	2 cut(s)	103, 256
HpyCH4III	ACNGT	4 cut(s)	205, 343, 719, 766
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	8 cut(s)	356, 400, 435, 672, 773, 899, 955, 1073
HpyF10VI	GCNNNNNNNGC	2 cut(s)	924, 952
HpyF3I	CTNAG	4 cut(s)	224, 332, 873, 923
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	4 cut(s)	30, 107, 602, 971
Kzo9I	GATC	5 cut(s)	217, 234, 271, 496, 963
LmnI	GCTCC	3 cut(s)	76, 89, 314
LpnPI	CCDG	7 cut(s)	69, 185, 297, 324, 614, 759, 801
Lsp1109I	GCAGC	4 cut(s)	316, 319, 412, 705
LweI	GCATC	3 cut(s)	634, 908, 1060
MaeI	CTAG	4 cut(s)	143, 179, 189, 390
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	3 cut(s)	174, 719, 1049
MalI	GATC	5 cut(s)	219, 236, 273, 498, 965
MboI	GATC	5 cut(s)	217, 234, 271, 496, 963
MboII	GAAGA	6 cut(s)	110, 150, 204, 378, 487, 758
MflI	RGATCY	2 cut(s)	496, 963
MhlI	GDGCHC	2 cut(s)	19, 617
MlsI	TGGCCA	1 cut(s)	523
MluCI	AATT	3 cut(s)	540, 729, 981
MluNI	TGGCCA	1 cut(s)	523
MmeI	TCCRAC	1 cut(s)	1035
MnlI	CCTC	8 cut(s)	169, 202, 261, 412, 464, 606, 646, 832
Mox20I	TGGCCA	1 cut(s)	523
Mph1103I	ATGCAT	1 cut(s)	1075
MscI	TGGCCA	1 cut(s)	523
MslI	CAYNNNNRTG	2 cut(s)	84, 639
Msp20I	TGGCCA	1 cut(s)	523
MspA1I	CMGCKG	1 cut(s)	696
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	924, 952
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	5 cut(s)	217, 234, 271, 496, 963
NlaIII	CATG	4 cut(s)	30, 107, 602, 971
NlaIV	GGNNCC	2 cut(s)	91, 616
NmuCI	GTSAC	3 cut(s)	174, 719, 1049
NsiI	ATGCAT	1 cut(s)	1075
NspV	TTCGAA	1 cut(s)	96
PaeR7I	CTCGAG	1 cut(s)	648
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	125, 131, 1007
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	6 cut(s)	59, 157, 306, 309, 402, 695
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	91, 616
PspPI	GGNCC	1 cut(s)	877
PstI	CTGCAG	1 cut(s)	957
PsuI	RGATCY	2 cut(s)	496, 963
PvuII	CAGCTG	1 cut(s)	696
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	2 cut(s)	84, 639
SatI	GCNGC	6 cut(s)	58, 156, 305, 308, 401, 694
Sau3AI	GATC	5 cut(s)	217, 234, 271, 496, 963
Sau96I	GGNCC	1 cut(s)	877
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	2 cut(s)	19, 617
SfaNI	GCATC	3 cut(s)	634, 908, 1060
SfcI	CTRYAG	2 cut(s)	710, 953
Sfr274I	CTCGAG	1 cut(s)	648
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	1 cut(s)	877
SlaI	CTCGAG	1 cut(s)	648
SmiMI	CAYNNNNRTG	2 cut(s)	84, 639
SmlI	CTYRAG	1 cut(s)	648
SmoI	CTYRAG	1 cut(s)	648
Sse9I	AATT	3 cut(s)	540, 729, 981
SsiI	CCGC	6 cut(s)	19, 57, 156, 228, 611, 977
SspMI	CTAG	4 cut(s)	143, 179, 189, 390
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	2 cut(s)	26, 867
TaaI	ACNGT	4 cut(s)	205, 343, 719, 766
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	3 cut(s)	96, 649, 733
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	3 cut(s)	540, 729, 981
TatI	WGTACW	1 cut(s)	338
TauI	GCSGC	2 cut(s)	60, 158
TfiI	GAWTC	3 cut(s)	125, 131, 1007
TscAI	CASTG	2 cut(s)	410, 962
TseFI	GTSAC	3 cut(s)	174, 719, 1049
TseI	GCWGC	4 cut(s)	304, 307, 400, 693
Tsp45I	GTSAC	3 cut(s)	174, 719, 1049
TspDTI	ATGAA	4 cut(s)	179, 495, 500, 623
TspRI	CASTG	2 cut(s)	410, 962
VpaK11BI	GGWCC	1 cut(s)	877
XhoI	CTCGAG	1 cut(s)	648
XspI	CTAG	4 cut(s)	143, 179, 189, 390
Zsp2I	ATGCAT	1 cut(s)	1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.