Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0016969

Physical Location & Seq

Genomic Coordinates Reverse (-)

3159011 .. 3166114

Gene Structure 7104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG047100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAGATGAGTAGAGCCCGCTATCCATGGCGAGTGTTGACATTTGATGAGAACGGCGGCATACAACAAGTTTTGGAGCATTCTGGTGGAGCCTTCGAAGACCATGTGGTTCAGACTTGGGACGAATCGGATTCCCGAAGACTAGGTGTGGTTGCCGCCTCTATGAATGACCGGTCACTAGCTGTGGCTAGAAGAAATGGCACAGTTGAGGTTCGTGATCGTCTTAGCGGGCAGATCGGTCTCACCTTCCCTCATCTCACTAATGAGAGTGATCCTTTTGTGGGGCTACACCTATTTACAAAGCAGCAGCCAGGAGCATTTGGGTCATTGCTTAGTTGTACAGTTCAAGGAAATGCAAGGATAATATCTTTTGAAGTGGACAACTCTTCTAGGACTTTGCAGCAGTGGAAAGTGAGAGAGGATGTCTTGTGTTGCAAGGTTGACGGGAGTGAACGTGTTTGTCTATTCGGAGGGAAGAATGAAATGAATATATGGGATCTTGAATATAATGTGAAGTCTTGGCCAACAAAAGAGCGTCCAATTCAGAGTAGAAAACTTTGGTGGACATCTGCCACCTTTCTGACAAGAGATAATCCTCATGTATTTGTGGCGGGCACCAACAAAAATCAGGTTCATATTTATGATGCTCGAGAGGATATTGATGAGCCTTGCAACATATATGACATACAGAGCAGCTGTCTAAAAAGGCTACAGAACCGTGACACTCCAATTCGAGCTATTGCTGAAGATAAAGATGGTTATACGGTTTATGCAGGCAACGATTGTGGTAATCTTGTTTCTTTGGATACACGCACAGGTACAACAAGCAAGTTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

31.55

Weight (kDa)

5.91

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016969)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c30g0501231 RchiOBHm_Chr3g0452771 RchiOBHm_Chr3g0452851
rosa_laevigata	RLG00000025569
rosa_roxburghii	Rroxscaffold_6G00429830
rosa_rugosa	Rorug02G0643100
rosa_samantha	Rh3AG045600 Rh3AG045800 Rh3BG048000 Rh3BG048200 Rh3CG046500 Rh3CG046700 Rh3DG047100 Rh3DG047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	614
AciI	CCGC	5 cut(s)	19, 57, 156, 228, 611
AclWI	GGATC	2 cut(s)	266, 504
AcoI	YGGCCR	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	765
AfaI	GTAC	2 cut(s)	340, 820
AfiI	CCNNNNNNNGG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	454
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	347, 374, 503
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	3 cut(s)	182, 696, 737
AluI	AGCT	3 cut(s)	182, 696, 737
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	2 cut(s)	266, 504
Ama87I	CYCGRG	1 cut(s)	648
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	4 cut(s)	304, 307, 400, 693
AsiGI	ACCGGT	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	235
AsuII	TTCGAA	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	648
BaeGI	GKGCMC	1 cut(s)	617
BalI	TGGCCA	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	19
BbsI	GAAGAC	2 cut(s)	105, 145
BbvI	GCAGC	4 cut(s)	316, 319, 412, 705
BccI	CCATC	1 cut(s)	749
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	312
BciVI	GTATCC	1 cut(s)	799
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	4 cut(s)	143, 179, 189, 390
BfmI	CTRYAG	1 cut(s)	710
BfuI	GTATCC	1 cut(s)	799
BisI	GCNGC	6 cut(s)	58, 156, 305, 308, 401, 694
BlsI	GCNGC	6 cut(s)	59, 157, 306, 309, 402, 695
Bme1390I	CCNGG	1 cut(s)	312
BmeT110I	CYCGRG	1 cut(s)	648
BmiI	GGNNCC	2 cut(s)	91, 616
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	1 cut(s)	634
BpiI	GAAGAC	2 cut(s)	105, 145
Bpu14I	TTCGAA	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse118I	RCCGGY	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	4 cut(s)	316, 319, 412, 705
BshFI	GGCC	1 cut(s)	523
BshNI	GGYRCC	1 cut(s)	614
BshTI	ACCGGT	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	648
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	523
Bso31I	GGTCTC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	648
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	2 cut(s)	19, 617
Bsp1407I	TGTACA	1 cut(s)	338
Bsp143I	GATC	4 cut(s)	217, 234, 271, 496
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	5 cut(s)	19, 57, 156, 228, 611
BspANI	GGCC	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	91, 616
BspPI	GGATC	2 cut(s)	266, 504
BspT104I	TTCGAA	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	4 cut(s)	217, 234, 271, 496
BssT1I	CCWWGG	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	4 cut(s)	205, 343, 719, 766
Bst6I	CTCTTC	1 cut(s)	391
BstAUI	TGTACA	1 cut(s)	338
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	4 cut(s)	19, 230, 613, 775
BstDEI	CTNAG	2 cut(s)	224, 332
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	4 cut(s)	220, 237, 274, 499
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	4 cut(s)	217, 234, 271, 496
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	710
BstSLI	GKGCMC	1 cut(s)	617
BstV1I	GCAGC	4 cut(s)	316, 319, 412, 705
BstV2I	GAAGAC	2 cut(s)	105, 145
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	1 cut(s)	523
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	1 cut(s)	410
Cac8I	GCNNGC	4 cut(s)	19, 230, 613, 775
Cfr10I	RCCGGY	1 cut(s)	171
CseI	GACGC	1 cut(s)	524
Csp6I	GTAC	2 cut(s)	339, 819
CspAI	ACCGGT	1 cut(s)	171
CspCI	CAANNNNNGTGG	2 cut(s)	766, 801
CviAII	CATG	3 cut(s)	27, 104, 599
CviQI	GTAC	2 cut(s)	339, 819
DdeI	CTNAG	2 cut(s)	224, 332
DpnI	GATC	4 cut(s)	219, 236, 273, 498
DpnII	GATC	4 cut(s)	217, 234, 271, 496
EaeI	YGGCCR	1 cut(s)	521
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	648
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	3 cut(s)	30, 107, 602
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	3 cut(s)	26, 103, 598
FauI	CCCGC	3 cut(s)	26, 221, 604
Fnu4HI	GCNGC	6 cut(s)	58, 156, 305, 308, 401, 694
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	6 cut(s)	58, 156, 305, 308, 401, 694
FspBI	CTAG	4 cut(s)	143, 179, 189, 390
GluI	GCNGC	6 cut(s)	58, 156, 305, 308, 401, 694
HaeIII	GGCC	1 cut(s)	523
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	1 cut(s)	524
Hin1II	CATG	3 cut(s)	30, 107, 602
HincII	GTYRAC	2 cut(s)	39, 442
HindII	GTYRAC	2 cut(s)	39, 442
HinfI	GANTC	2 cut(s)	125, 131
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	5 cut(s)	39, 379, 442, 452, 564
Hpy188I	TCNGA	5 cut(s)	114, 130, 470, 546, 582
Hpy188III	TCNNGA	4 cut(s)	135, 215, 500, 650
Hpy8I	GTNNAC	5 cut(s)	39, 379, 442, 452, 564
HpyAV	CCTTC	2 cut(s)	103, 256
HpyCH4III	ACNGT	4 cut(s)	205, 343, 719, 766
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	5 cut(s)	356, 400, 435, 672, 773
HpyF3I	CTNAG	2 cut(s)	224, 332
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	3 cut(s)	30, 107, 602
Kzo9I	GATC	4 cut(s)	217, 234, 271, 496
LmnI	GCTCC	3 cut(s)	76, 89, 314
LpnPI	CCDG	7 cut(s)	69, 185, 297, 324, 614, 759, 801
Lsp1109I	GCAGC	4 cut(s)	316, 319, 412, 705
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	4 cut(s)	143, 179, 189, 390
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	2 cut(s)	174, 719
MalI	GATC	4 cut(s)	219, 236, 273, 498
MboI	GATC	4 cut(s)	217, 234, 271, 496
MboII	GAAGA	6 cut(s)	110, 150, 204, 378, 487, 758
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	2 cut(s)	19, 617
MlsI	TGGCCA	1 cut(s)	523
MluCI	AATT	2 cut(s)	540, 729
MluNI	TGGCCA	1 cut(s)	523
MnlI	CCTC	7 cut(s)	169, 202, 261, 412, 464, 606, 646
Mox20I	TGGCCA	1 cut(s)	523
MscI	TGGCCA	1 cut(s)	523
MseI	TTAA	1 cut(s)	838
MslI	CAYNNNNRTG	2 cut(s)	84, 639
Msp20I	TGGCCA	1 cut(s)	523
MspA1I	CMGCKG	1 cut(s)	696
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	4 cut(s)	217, 234, 271, 496
NlaIII	CATG	3 cut(s)	30, 107, 602
NlaIV	GGNNCC	2 cut(s)	91, 616
NmuCI	GTSAC	2 cut(s)	174, 719
NspV	TTCGAA	1 cut(s)	96
PaeR7I	CTCGAG	1 cut(s)	648
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	125, 131
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	6 cut(s)	59, 157, 306, 309, 402, 695
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	91, 616
PsuI	RGATCY	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	696
RsaI	GTAC	2 cut(s)	340, 820
RsaNI	GTAC	2 cut(s)	339, 819
RseI	CAYNNNNRTG	2 cut(s)	84, 639
SaqAI	TTAA	1 cut(s)	838
SatI	GCNGC	6 cut(s)	58, 156, 305, 308, 401, 694
Sau3AI	GATC	4 cut(s)	217, 234, 271, 496
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	2 cut(s)	19, 617
SfaNI	GCATC	1 cut(s)	634
SfcI	CTRYAG	1 cut(s)	710
Sfr274I	CTCGAG	1 cut(s)	648
SfuI	TTCGAA	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	648
SmiMI	CAYNNNNRTG	2 cut(s)	84, 639
SmlI	CTYRAG	1 cut(s)	648
SmoI	CTYRAG	1 cut(s)	648
Sse9I	AATT	2 cut(s)	540, 729
SsiI	CCGC	5 cut(s)	19, 57, 156, 228, 611
SspMI	CTAG	4 cut(s)	143, 179, 189, 390
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	4 cut(s)	205, 343, 719, 766
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	3 cut(s)	96, 649, 733
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	2 cut(s)	540, 729
TatI	WGTACW	1 cut(s)	338
TauI	GCSGC	2 cut(s)	60, 158
TfiI	GAWTC	2 cut(s)	125, 131
Tru1I	TTAA	1 cut(s)	838
Tru9I	TTAA	1 cut(s)	838
TscAI	CASTG	1 cut(s)	410
TseFI	GTSAC	2 cut(s)	174, 719
TseI	GCWGC	4 cut(s)	304, 307, 400, 693
Tsp45I	GTSAC	2 cut(s)	174, 719
TspDTI	ATGAA	4 cut(s)	179, 495, 500, 623
TspRI	CASTG	1 cut(s)	410
XhoI	CTCGAG	1 cut(s)	648
XspI	CTAG	4 cut(s)	143, 179, 189, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.