Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0016969

Physical Location & Seq

Genomic Coordinates Forward (+)

46747159 .. 46754179

Gene Structure 7021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025569

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAGGAGGACTTGGAGATGAGTAGTGCCCGCTATCCATGGCGAGTGTTGGCATTTGATGACAGCGGTGGCATACAAGTTTTGGAACATTCTGGTGGAGCCTCCGAAGAGCATGTGGTTCATACTTGGGACGAATCGTATTCCCGAAGGCTAGGTGTGGTTGCCGCCTCTATGAATGACCGGTTACTAGCTGTGGCTAGAAGAAATGGCACAGTTGAGGTTCGTGATCGTCTTACTGGGGAGATCGGTCCAACCATCCCTCCTCTCACTAATGAGAGTGATCCTTTTGTGGGGCTGCATCTATTTACAAAGCAGCAGCCAGGATCATTTGGGTCACTGCTTTGTTGTACAGTTCAAGGAAATGCAAGGATAATATCTTTGGAAGTGGACAACTCTTCTAGGACTTTGCAACAATGGAAAGTGAGAGAGAATATCTTGTGTTGCAAGGTTGACGGGAGTGAACGCGTTTGTCTATTCGGAGGGAAGAATGAAATGAATATATGGGATCTTGAATATAATGTCAAGTCTTGGCCAACAAAAGATCGTCCATTTCATAATGGACTAAATTGGTGGACATCTGCCACCTTTCTGGCAAGAGATAATCCTCATGTATTTGTGGTGGGCACCAACAACAATCAGGTTCTTGTCTATGATGCTCGCGAGGATGTTGATGAGCTAAGTCCTTGCAAGATATATGACATAGAGAGCAGCTGTACAAAAAGGCTAGATAACGGTGACACTCCAGTACAAGCTATTGCAGAAGATGAAGATGGCTATACAGTTTATGCTGGCAATGATTGTGGTAATCTTGTTTCTTTGGATACACGCACAGGGAGAGTTTTGGGTTGCTTTCGGGGAATAGACACACGTAGTGTAAAATCCTTGGCTAAGCACCCCGAGCTACCAGTGATTGCATCTTGTGGAGATGACAGCTTTCTCAGCATTTGGAATACAAAGAGGCAAAAGCTGCAACTTCAGATCCTTGTGCGTCCAGCGATTGATCTCACAAATGTTATCGTTGATCCCAACTTTTTTGAAAAGGATGGAGGCAAAAAGGGGGAAGTCACTAAAGGTTCAGAAGTGATGCATCTTGAAGAGGATTTGACTCATTTGAGAGTGAAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

376

Amino Acids

41.92

Weight (kDa)

5.12

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016969)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c30g0501231 RchiOBHm_Chr3g0452771 RchiOBHm_Chr3g0452851
rosa_laevigata	RLG00000025569
rosa_roxburghii	Rroxscaffold_6G00429830
rosa_rugosa	Rorug02G0643100
rosa_samantha	Rh3AG045600 Rh3AG045800 Rh3BG048000 Rh3BG048200 Rh3CG046500 Rh3CG046700 Rh3DG047100 Rh3DG047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	623
AccII	CGCG	2 cut(s)	465, 660
AciI	CCGC	3 cut(s)	31, 66, 165
AclWI	GGATC	5 cut(s)	275, 331, 513, 973, 1016
AcoI	YGGCCR	1 cut(s)	530
AcuI	CTGAAG	1 cut(s)	959
AdeI	CACNNNGTG	1 cut(s)	872
AfaI	GTAC	3 cut(s)	349, 715, 747
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflIII	ACRYGT	2 cut(s)	463, 866
AgeI	ACCGGT	1 cut(s)	180
AgsI	TTSAA	4 cut(s)	356, 512, 1037, 1094
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	7 cut(s)	191, 676, 711, 752, 901, 933, 967
AluI	AGCT	7 cut(s)	191, 676, 711, 752, 901, 933, 967
AlwI	GGATC	5 cut(s)	275, 331, 513, 973, 1016
Ama87I	CYCGRG	1 cut(s)	896
AoxI	GGCC	1 cut(s)	530
ApeKI	GCWGC	5 cut(s)	295, 313, 316, 708, 967
AsiGI	ACCGGT	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	746
AvaI	CYCGRG	1 cut(s)	896
AvaII	GGWCC	1 cut(s)	248
BaeGI	GKGCMC	2 cut(s)	31, 626
BalI	TGGCCA	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	623
BbvI	GCAGC	5 cut(s)	282, 325, 328, 720, 954
BccI	CCATC	3 cut(s)	263, 764, 1037
BciT130I	CCWGG	1 cut(s)	321
BciVI	GTATCC	1 cut(s)	814
BfaI	CTAG	5 cut(s)	152, 188, 198, 399, 725
BfuI	GTATCC	1 cut(s)	814
BisI	GCNGC	6 cut(s)	165, 296, 314, 317, 709, 968
BlpI	GCTNAGC	1 cut(s)	888
BlsI	GCNGC	6 cut(s)	166, 297, 315, 318, 710, 969
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	896
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	2 cut(s)	100, 625
BmrFI	CCNGG	1 cut(s)	321
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	5 cut(s)	307, 643, 923, 1074, 1096
BmuI	ACTGGG	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	726
Bpu1102I	GCTNAGC	1 cut(s)	888
BsaAI	YACGTR	1 cut(s)	869
BsaJI	CCNNGG	2 cut(s)	38, 882
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse118I	RCCGGY	1 cut(s)	180
Bse1I	ACTGG	3 cut(s)	241, 743, 905
Bse3DI	GCAATG	1 cut(s)	799
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	38, 882
BseGI	GGATG	3 cut(s)	255, 670, 1048
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	799
BseMII	CTCAG	1 cut(s)	952
BseNI	ACTGG	3 cut(s)	241, 743, 905
BseRI	GAGGAG	2 cut(s)	20, 252
BseSI	GKGCMC	2 cut(s)	31, 626
BseXI	GCAGC	5 cut(s)	282, 325, 328, 720, 954
Bsh1236I	CGCG	2 cut(s)	465, 660
BshFI	GGCC	1 cut(s)	532
BshNI	GGYRCC	1 cut(s)	623
BshTI	ACCGGT	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	896
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	532
BsoBI	CYCGRG	1 cut(s)	896
Bsp1286I	GDGCHC	2 cut(s)	31, 626
Bsp1407I	TGTACA	2 cut(s)	347, 713
Bsp143I	GATC	9 cut(s)	226, 243, 280, 323, 505, 541, 978, 1000, 1021
Bsp1720I	GCTNAGC	1 cut(s)	888
Bsp19I	CCATGG	1 cut(s)	38
Bsp68I	TCGCGA	1 cut(s)	660
BspACI	CCGC	3 cut(s)	31, 66, 165
BspANI	GGCC	1 cut(s)	532
BspCNI	CTCAG	1 cut(s)	951
BspFNI	CGCG	2 cut(s)	465, 660
BspLI	GGNNCC	2 cut(s)	100, 625
BspPI	GGATC	5 cut(s)	275, 331, 513, 973, 1016
BspQI	GCTCTTC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	623
BsrDI	GCAATG	1 cut(s)	799
BsrFI	RCCGGY	1 cut(s)	180
BsrGI	TGTACA	2 cut(s)	347, 713
BsrI	ACTGG	3 cut(s)	241, 743, 905
BssAI	RCCGGY	1 cut(s)	180
BssECI	CCNNGG	2 cut(s)	38, 882
BssMI	GATC	9 cut(s)	226, 243, 280, 323, 505, 541, 978, 1000, 1021
BssT1I	CCWWGG	2 cut(s)	38, 882
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	4 cut(s)	214, 352, 734, 781
Bst6I	CTCTTC	3 cut(s)	102, 400, 1089
BstAPI	GCANNNNNTGC	1 cut(s)	967
BstAUI	TGTACA	2 cut(s)	347, 713
BstBAI	YACGTR	1 cut(s)	869
BstC8I	GCNNGC	3 cut(s)	31, 658, 790
BstDEI	CTNAG	3 cut(s)	677, 888, 938
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	3 cut(s)	255, 670, 1048
BstFNI	CGCG	2 cut(s)	465, 660
BstKTI	GATC	9 cut(s)	229, 246, 283, 326, 508, 544, 981, 1003, 1024
BstMBI	GATC	9 cut(s)	226, 243, 280, 323, 505, 541, 978, 1000, 1021
BstMWI	GCNNNNNNNGC	3 cut(s)	898, 939, 967
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	319
BstSLI	GKGCMC	2 cut(s)	31, 626
BstUI	CGCG	2 cut(s)	465, 660
BstV1I	GCAGC	5 cut(s)	282, 325, 328, 720, 954
BstX2I	RGATCY	2 cut(s)	505, 978
BstXI	CCANNNNNNTGG	1 cut(s)	589
BstYI	RGATCY	2 cut(s)	505, 978
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	1 cut(s)	532
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	255, 670, 1048
BtsI	GCAGTG	1 cut(s)	335
BtsIMutI	CAGTG	2 cut(s)	335, 912
BtuMI	TCGCGA	1 cut(s)	660
Cac8I	GCNNGC	3 cut(s)	31, 658, 790
Cfr10I	RCCGGY	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	1 cut(s)	977
Csp6I	GTAC	3 cut(s)	348, 714, 746
CspAI	ACCGGT	1 cut(s)	180
CspCI	CAANNNNNGTGG	2 cut(s)	781, 816
CviAII	CATG	3 cut(s)	39, 113, 608
CviQI	GTAC	3 cut(s)	348, 714, 746
DdeI	CTNAG	3 cut(s)	677, 888, 938
DpnI	GATC	9 cut(s)	228, 245, 282, 325, 507, 543, 980, 1002, 1023
DpnII	GATC	9 cut(s)	226, 243, 280, 323, 505, 541, 978, 1000, 1021
DraIII	CACNNNGTG	1 cut(s)	872
EaeI	YGGCCR	1 cut(s)	530
Eam1104I	CTCTTC	3 cut(s)	102, 400, 1089
EarI	CTCTTC	3 cut(s)	102, 400, 1089
Eco130I	CCWWGG	2 cut(s)	38, 882
Eco47I	GGWCC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	959
Eco88I	CYCGRG	1 cut(s)	896
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	38, 882
EcoT22I	ATGCAT	1 cut(s)	1089
ErhI	CCWWGG	2 cut(s)	38, 882
FaeI	CATG	3 cut(s)	42, 116, 611
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	3 cut(s)	38, 112, 607
FauI	CCCGC	1 cut(s)	38
Fnu4HI	GCNGC	6 cut(s)	165, 296, 314, 317, 709, 968
FokI	GGATG	3 cut(s)	242, 677, 1055
Fsp4HI	GCNGC	6 cut(s)	165, 296, 314, 317, 709, 968
FspBI	CTAG	5 cut(s)	152, 188, 198, 399, 725
GluI	GCNGC	6 cut(s)	165, 296, 314, 317, 709, 968
GsuI	CTGGAG	1 cut(s)	726
HaeIII	GGCC	1 cut(s)	532
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	977
Hin1II	CATG	3 cut(s)	42, 116, 611
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	2 cut(s)	134, 1105
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	746
Hpy166II	GTNNAC	4 cut(s)	388, 451, 461, 573
Hpy188I	TCNGA	4 cut(s)	106, 479, 978, 1078
Hpy188III	TCNNGA	5 cut(s)	144, 224, 509, 659, 1091
Hpy8I	GTNNAC	4 cut(s)	388, 451, 461, 573
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	4 cut(s)	214, 352, 734, 781
HpyCH4IV	ACGT	1 cut(s)	868
HpyCH4V	TGCA	9 cut(s)	298, 365, 409, 444, 687, 758, 914, 970, 1087
HpyF10VI	GCNNNNNNNGC	3 cut(s)	898, 939, 967
HpyF3I	CTNAG	3 cut(s)	677, 888, 938
HpySE526I	ACGT	1 cut(s)	868
Hsp92II	CATG	3 cut(s)	42, 116, 611
Kzo9I	GATC	9 cut(s)	226, 243, 280, 323, 505, 541, 978, 1000, 1021
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	5 cut(s)	282, 325, 328, 720, 954
LweI	GCATC	5 cut(s)	307, 643, 923, 1074, 1096
MaeI	CTAG	5 cut(s)	152, 188, 198, 399, 725
MaeII	ACGT	1 cut(s)	868
MaeIII	GTNAC	4 cut(s)	183, 333, 734, 1063
MalI	GATC	9 cut(s)	228, 245, 282, 325, 507, 543, 980, 1002, 1023
MboI	GATC	9 cut(s)	226, 243, 280, 323, 505, 541, 978, 1000, 1021
MboII	GAAGA	7 cut(s)	119, 213, 387, 496, 773, 779, 1106
MflI	RGATCY	2 cut(s)	505, 978
MhlI	GDGCHC	2 cut(s)	31, 626
MlsI	TGGCCA	1 cut(s)	532
MluCI	AATT	1 cut(s)	565
MluI	ACGCGT	1 cut(s)	463
MluNI	TGGCCA	1 cut(s)	532
MlyI	GAGTC	1 cut(s)	1099
MmeI	TCCRAC	1 cut(s)	275
Mox20I	TGGCCA	1 cut(s)	532
Mph1103I	ATGCAT	1 cut(s)	1089
MscI	TGGCCA	1 cut(s)	532
MslI	CAYNNNNRTG	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	532
MspA1I	CMGCKG	2 cut(s)	66, 711
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	2 cut(s)	465, 660
MwoI	GCNNNNNNNGC	3 cut(s)	898, 939, 967
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	9 cut(s)	226, 243, 280, 323, 505, 541, 978, 1000, 1021
NlaIII	CATG	3 cut(s)	42, 116, 611
NlaIV	GGNNCC	2 cut(s)	100, 625
NmuCI	GTSAC	3 cut(s)	333, 734, 1063
NruI	TCGCGA	1 cut(s)	660
NsiI	ATGCAT	1 cut(s)	1089
NspI	RCATGY	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	134
PinAI	ACCGGT	1 cut(s)	180
PkrI	GCNGC	6 cut(s)	166, 297, 315, 318, 710, 969
PleI	GAGTC	1 cut(s)	1099
PpsI	GAGTC	1 cut(s)	1099
Ppu21I	YACGTR	1 cut(s)	869
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	100, 625
PspPI	GGNCC	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	505, 978
PvuII	CAGCTG	1 cut(s)	711
RruI	TCGCGA	1 cut(s)	660
RsaI	GTAC	3 cut(s)	349, 715, 747
RsaNI	GTAC	3 cut(s)	348, 714, 746
RseI	CAYNNNNRTG	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	102
SatI	GCNGC	6 cut(s)	165, 296, 314, 317, 709, 968
Sau3AI	GATC	9 cut(s)	226, 243, 280, 323, 505, 541, 978, 1000, 1021
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	1 cut(s)	1099
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	2 cut(s)	31, 626
SfaNI	GCATC	5 cut(s)	307, 643, 923, 1074, 1096
SinI	GGWCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	1 cut(s)	565
SsiI	CCGC	3 cut(s)	31, 66, 165
SspMI	CTAG	5 cut(s)	152, 188, 198, 399, 725
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	2 cut(s)	38, 882
TaaI	ACNGT	4 cut(s)	214, 352, 734, 781
TaiI	ACGT	1 cut(s)	871
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	1 cut(s)	565
TatI	WGTACW	3 cut(s)	347, 713, 745
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	134
TscAI	CASTG	2 cut(s)	342, 912
TseFI	GTSAC	3 cut(s)	333, 734, 1063
TseI	GCWGC	5 cut(s)	295, 313, 316, 708, 967
Tsp45I	GTSAC	3 cut(s)	333, 734, 1063
TspDTI	ATGAA	6 cut(s)	110, 188, 504, 509, 542, 780
TspRI	CASTG	2 cut(s)	342, 912
VpaK11BI	GGWCC	1 cut(s)	248
XceI	RCATGY	1 cut(s)	116
XspI	CTAG	5 cut(s)	152, 188, 198, 399, 725
Zsp2I	ATGCAT	1 cut(s)	1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.