Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0016969

Physical Location & Seq

Genomic Coordinates Reverse (-)

3161718 .. 3166114

Gene Structure 4397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG045600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAGATGAGTAGAGCCCGCTATCCATGGCGAGTGTTGACATTTGATGAGAACGGCGGCATACAACAAGTTTTGGAGCATTCTGGTGGAGCCTTCGAAGACCATGTGGTTCAGACTTGGGACGAATCGGATTCCCGAAGACTAGGTGTGGTTGCCGCCTCTATGAATGACCGGTCACTAGCTGTGGCTAGAAGAAATGGCACAGTTGAGGTTCGTGATCGTCTTAGCGGGCAGATCGGTCTCACCTTCCCTCATCTCACTAATGAGAGTGATCCTTTTGTGGGGCTACACCTATTTACAAAGCAGCAGCCAGGAGCATTTGGGTCATTGCTTAGTTGTACAGTTCAAGGAAATGCAAGGATAATATCTTTTGAAGTGGACAACTCTTCTAGGACTTTGCAGCAGTGGAAAGTGAGAGAGGATGTCTTGTGTTGCAAGGTTGACGGGAGTGAACGTGTTTGTCTATTCGGAGGGAAGAATGAAATGAATATATGGGATCTTGAATATAATGTGAAGTCTTGGCCAACAAAAGAGCGTCCAATTCAGAGTAGAAAACTTTGGTGGACATCTGCCACCTTTCTGACAAGAGATAATCCTCATGTATTTGTGGCGGGCACCAACAAAAATCAGGGGGATGCACTTGCTCTTTTATTTTGGGAACATATGTGGCGTGAGCCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

25.91

Weight (kDa)

6.31

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016969)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c30g0501231 RchiOBHm_Chr3g0452771 RchiOBHm_Chr3g0452851
rosa_laevigata	RLG00000025569
rosa_roxburghii	Rroxscaffold_6G00429830
rosa_rugosa	Rorug02G0643100
rosa_samantha	Rh3AG045600 Rh3AG045800 Rh3BG048000 Rh3BG048200 Rh3CG046500 Rh3CG046700 Rh3DG047100 Rh3DG047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	614
AciI	CCGC	5 cut(s)	19, 57, 156, 228, 611
AclWI	GGATC	2 cut(s)	266, 504
AcoI	YGGCCR	1 cut(s)	521
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	454
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	347, 374, 503
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	2 cut(s)	266, 504
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	3 cut(s)	304, 307, 400
AsiGI	ACCGGT	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	235
AsuII	TTCGAA	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	617
BalI	TGGCCA	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	19
BbsI	GAAGAC	2 cut(s)	105, 145
BbvI	GCAGC	3 cut(s)	316, 319, 412
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	5 cut(s)	143, 179, 189, 390, 682
BisI	GCNGC	5 cut(s)	58, 156, 305, 308, 401
BlsI	GCNGC	5 cut(s)	59, 157, 306, 309, 402
Bme1390I	CCNGG	1 cut(s)	312
BmiI	GGNNCC	2 cut(s)	91, 616
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	1 cut(s)	625
BpiI	GAAGAC	2 cut(s)	105, 145
Bpu14I	TTCGAA	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse118I	RCCGGY	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	427, 640
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	3 cut(s)	316, 319, 412
BshFI	GGCC	1 cut(s)	523
BshNI	GGYRCC	1 cut(s)	614
BshTI	ACCGGT	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	523
Bso31I	GGTCTC	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	2 cut(s)	19, 617
Bsp1407I	TGTACA	1 cut(s)	338
Bsp143I	GATC	4 cut(s)	217, 234, 271, 496
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	5 cut(s)	19, 57, 156, 228, 611
BspANI	GGCC	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	91, 616
BspPI	GGATC	2 cut(s)	266, 504
BspT104I	TTCGAA	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	4 cut(s)	217, 234, 271, 496
BssT1I	CCWWGG	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	205, 343
Bst6I	CTCTTC	1 cut(s)	391
BstAUI	TGTACA	1 cut(s)	338
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	19, 230, 613
BstDEI	CTNAG	2 cut(s)	224, 332
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	427, 640
BstKTI	GATC	4 cut(s)	220, 237, 274, 499
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	4 cut(s)	217, 234, 271, 496
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstSLI	GKGCMC	1 cut(s)	617
BstV1I	GCAGC	3 cut(s)	316, 319, 412
BstV2I	GAAGAC	2 cut(s)	105, 145
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuRI	GGCC	1 cut(s)	523
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	427, 640
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	1 cut(s)	410
Cac8I	GCNNGC	3 cut(s)	19, 230, 613
Cfr10I	RCCGGY	1 cut(s)	171
CseI	GACGC	1 cut(s)	524
Csp6I	GTAC	1 cut(s)	339
CspAI	ACCGGT	1 cut(s)	171
CviAII	CATG	3 cut(s)	27, 104, 599
CviJI	RGCY	8 cut(s)	17, 92, 182, 188, 286, 310, 523, 676
CviKI_1	RGCY	8 cut(s)	17, 92, 182, 188, 286, 310, 523, 676
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	2 cut(s)	224, 332
DpnI	GATC	4 cut(s)	219, 236, 273, 498
DpnII	GATC	4 cut(s)	217, 234, 271, 496
EaeI	YGGCCR	1 cut(s)	521
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	3 cut(s)	30, 107, 602
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	3 cut(s)	26, 103, 598
FauI	CCCGC	3 cut(s)	26, 221, 604
FauNDI	CATATG	1 cut(s)	663
Fnu4HI	GCNGC	5 cut(s)	58, 156, 305, 308, 401
FokI	GGATG	2 cut(s)	434, 647
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	5 cut(s)	58, 156, 305, 308, 401
FspBI	CTAG	5 cut(s)	143, 179, 189, 390, 682
GluI	GCNGC	5 cut(s)	58, 156, 305, 308, 401
HaeIII	GGCC	1 cut(s)	523
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	1 cut(s)	524
Hin1II	CATG	3 cut(s)	30, 107, 602
HincII	GTYRAC	2 cut(s)	39, 442
HindII	GTYRAC	2 cut(s)	39, 442
HinfI	GANTC	2 cut(s)	125, 131
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	5 cut(s)	39, 379, 442, 452, 564
Hpy188I	TCNGA	5 cut(s)	114, 130, 470, 546, 582
Hpy188III	TCNNGA	3 cut(s)	135, 215, 500
Hpy8I	GTNNAC	5 cut(s)	39, 379, 442, 452, 564
HpyAV	CCTTC	2 cut(s)	103, 256
HpyCH4III	ACNGT	2 cut(s)	205, 343
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	4 cut(s)	356, 400, 435, 638
HpyF3I	CTNAG	2 cut(s)	224, 332
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	3 cut(s)	30, 107, 602
Kzo9I	GATC	4 cut(s)	217, 234, 271, 496
LmnI	GCTCC	3 cut(s)	76, 89, 314
LpnPI	CCDG	5 cut(s)	69, 185, 297, 324, 614
Lsp1109I	GCAGC	3 cut(s)	316, 319, 412
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	5 cut(s)	143, 179, 189, 390, 682
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	4 cut(s)	219, 236, 273, 498
MboI	GATC	4 cut(s)	217, 234, 271, 496
MboII	GAAGA	5 cut(s)	110, 150, 204, 378, 487
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	2 cut(s)	19, 617
MlsI	TGGCCA	1 cut(s)	523
MluCI	AATT	1 cut(s)	540
MluNI	TGGCCA	1 cut(s)	523
MnlI	CCTC	6 cut(s)	169, 202, 261, 412, 464, 606
Mox20I	TGGCCA	1 cut(s)	523
MscI	TGGCCA	1 cut(s)	523
MslI	CAYNNNNRTG	1 cut(s)	84
Msp20I	TGGCCA	1 cut(s)	523
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	663
NdeII	GATC	4 cut(s)	217, 234, 271, 496
NlaIII	CATG	3 cut(s)	30, 107, 602
NlaIV	GGNNCC	2 cut(s)	91, 616
NmuCI	GTSAC	1 cut(s)	174
NspV	TTCGAA	1 cut(s)	96
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	125, 131
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	5 cut(s)	59, 157, 306, 309, 402
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	91, 616
PsuI	RGATCY	1 cut(s)	496
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	84
SatI	GCNGC	5 cut(s)	58, 156, 305, 308, 401
Sau3AI	GATC	4 cut(s)	217, 234, 271, 496
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	2 cut(s)	19, 617
SetI	ASST	8 cut(s)	148, 184, 213, 248, 294, 441, 457, 578
SfaNI	GCATC	1 cut(s)	625
SfuI	TTCGAA	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	84
Sse9I	AATT	1 cut(s)	540
SsiI	CCGC	5 cut(s)	19, 57, 156, 228, 611
SspMI	CTAG	5 cut(s)	143, 179, 189, 390, 682
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	205, 343
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	1 cut(s)	540
TatI	WGTACW	1 cut(s)	338
TauI	GCSGC	2 cut(s)	60, 158
TfiI	GAWTC	2 cut(s)	125, 131
TscAI	CASTG	1 cut(s)	410
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	3 cut(s)	304, 307, 400
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	3 cut(s)	179, 495, 500
TspRI	CASTG	1 cut(s)	410
XspI	CTAG	5 cut(s)	143, 179, 189, 390, 682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.