Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016969

Physical Location & Seq

Genomic Coordinates Reverse (-)

50036151 .. 50043181

Gene Structure 7031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGAGATGAGTAGAGCCCGCTATCCATGGCGAGTGTTGGCATTTGATGAGAACGGCGGCATACAAGTTTTGGAGCATTCTGGTGGAGCCTTCGAAGACCATGTGGTTCAGACTTGGGACGAATCGGACTCCCGAAGACTAGGTGTGGTTGCCGCCTCTATGAATGACCGGGTTGAGGTTCGTGATCGTCTCAGCGGGCAGATCGGTCTCACCTTCCCTCATCTCACTAATGAGAGTGATCCTTTTGTGGGGCTACACCTATTTACAAAGCAGCAGCCAGGAGCATTTGGGTCATTGCTTAGTTGTACAGTTCAAGGAAATGCAAGGATAATATCTTTTGAAGTGGACAACTCTTCTAGGACTTTGCAGCAGTGGAAAGTGAGAGAGGATGTCTTGTGTTGCAAGGTTGACGGGAGTGAGCGTGTTTGTCTATTCGGAGGGAAGAATGAAATGAATATATGGGATCTTGAATATAATGTCAAGTCTTGGCCAACAAAAGAGCGTCCAATTCAGAGTGGAAAACTTTGGTGGACATCTGCCACCTTTCTGACAAGAGATAATCCTCATGTATTTGTGGCGGGCACCAACAAAAATCAGGTTTATATTTATGATGCTCGAGAGGATATTGATGAGCTAAGTCCTTGCAACATATATGACATACAGAGCAGCTGTCTAAAAAGGCTACAGAACCGTGACACTCCAATTCGAGCTATTGCTGAAGATAAAGATGGTTATACGGTTTATGCAGGCAACGATTGTGGTAATCTTGTTTCTTTGGATACACGCACAGGTACAACAAGCAAGTGCGTCCGCCAAATCGTCTTACAAATGTTATTGTTGATTCCAACTTTTTTGAAAAGGATGGAGACAAAAAGGGGAAAAGTCACAAAAGGTTCAGAAGTGATGCATCTTGAAGAGGATATGAGAGTGAAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

35.46

Weight (kDa)

5.94

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016969)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c30g0501231 RchiOBHm_Chr3g0452771 RchiOBHm_Chr3g0452851
rosa_laevigata	RLG00000025569
rosa_roxburghii	Rroxscaffold_6G00429830
rosa_rugosa	Rorug02G0643100
rosa_samantha	Rh3AG045600 Rh3AG045800 Rh3BG048000 Rh3BG048200 Rh3CG046500 Rh3CG046700 Rh3DG047100 Rh3DG047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	581
AciI	CCGC	6 cut(s)	19, 57, 153, 195, 578, 811
AclWI	GGATC	2 cut(s)	233, 471
AcoI	YGGCCR	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	738
AfaI	GTAC	2 cut(s)	307, 793
AfiI	CCNNNNNNNGG	2 cut(s)	175, 248
AgsI	TTSAA	5 cut(s)	314, 341, 470, 856, 914
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	3 cut(s)	634, 669, 710
AluI	AGCT	3 cut(s)	634, 669, 710
Alw26I	GTCTC	3 cut(s)	194, 212, 860
AlwI	GGATC	2 cut(s)	233, 471
Ama87I	CYCGRG	1 cut(s)	615
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	4 cut(s)	271, 274, 367, 666
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	202
AsuII	TTCGAA	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	615
BaeGI	GKGCMC	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	490
BanI	GGYRCC	1 cut(s)	581
BanII	GRGCYC	1 cut(s)	19
BbsI	GAAGAC	2 cut(s)	102, 142
BbvI	GCAGC	4 cut(s)	283, 286, 379, 678
BccI	CCATC	2 cut(s)	722, 856
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	279
BciVI	GTATCC	1 cut(s)	772
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	3 cut(s)	194, 212, 860
BfaI	CTAG	3 cut(s)	140, 357, 937
BfmI	CTRYAG	1 cut(s)	683
BfuI	GTATCC	1 cut(s)	772
BisI	GCNGC	6 cut(s)	58, 153, 272, 275, 368, 667
BlsI	GCNGC	6 cut(s)	59, 154, 273, 276, 369, 668
Bme1390I	CCNGG	2 cut(s)	170, 279
BmeT110I	CYCGRG	1 cut(s)	615
BmiI	GGNNCC	2 cut(s)	88, 583
BmrFI	CCNGG	2 cut(s)	170, 279
BmsI	GCATC	3 cut(s)	601, 894, 916
BpiI	GAAGAC	2 cut(s)	102, 142
Bpu14I	TTCGAA	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	406, 436
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 248
Bse3DI	GCAATG	1 cut(s)	293
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	394, 867
BseLI	CCNNNNNNNGG	2 cut(s)	175, 248
BseMI	GCAATG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	4 cut(s)	283, 286, 379, 678
BshFI	GGCC	1 cut(s)	490
BshNI	GGYRCC	1 cut(s)	581
BsiHKCI	CYCGRG	1 cut(s)	615
BsiSI	CCGG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	175, 248
BsmAI	GTCTC	3 cut(s)	194, 212, 860
BsmBI	CGTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	490
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	615
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	2 cut(s)	19, 584
Bsp1407I	TGTACA	1 cut(s)	305
Bsp143I	GATC	4 cut(s)	184, 201, 238, 463
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	6 cut(s)	19, 57, 153, 195, 578, 811
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	88, 583
BspPI	GGATC	2 cut(s)	233, 471
BspT104I	TTCGAA	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	293
BsrGI	TGTACA	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	4 cut(s)	184, 201, 238, 463
BssT1I	CCWWGG	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	3 cut(s)	310, 692, 739
Bst6I	CTCTTC	2 cut(s)	358, 909
BstAUI	TGTACA	1 cut(s)	305
BstBI	TTCGAA	1 cut(s)	93
BstC8I	GCNNGC	4 cut(s)	19, 197, 580, 748
BstDEI	CTNAG	3 cut(s)	191, 299, 635
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	394, 867
BstKTI	GATC	4 cut(s)	187, 204, 241, 466
BstMAI	GTCTC	3 cut(s)	194, 212, 860
BstMBI	GATC	4 cut(s)	184, 201, 238, 463
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	2 cut(s)	168, 277
BstSFI	CTRYAG	1 cut(s)	683
BstSLI	GKGCMC	1 cut(s)	584
BstV1I	GCAGC	4 cut(s)	283, 286, 379, 678
BstV2I	GAAGAC	2 cut(s)	102, 142
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BsuI	GTATCC	1 cut(s)	772
BsuRI	GGCC	1 cut(s)	490
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	394, 867
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	4 cut(s)	19, 197, 580, 748
CseI	GACGC	2 cut(s)	491, 796
Csp6I	GTAC	2 cut(s)	306, 792
CspCI	CAANNNNNGTGG	2 cut(s)	739, 774
CviAII	CATG	3 cut(s)	27, 101, 566
CviJI	RGCY	9 cut(s)	17, 89, 253, 277, 490, 634, 669, 682, 710
CviKI_1	RGCY	9 cut(s)	17, 89, 253, 277, 490, 634, 669, 682, 710
CviQI	GTAC	2 cut(s)	306, 792
DdeI	CTNAG	3 cut(s)	191, 299, 635
DpnI	GATC	4 cut(s)	186, 203, 240, 465
DpnII	GATC	4 cut(s)	184, 201, 238, 463
EaeI	YGGCCR	1 cut(s)	488
Eam1104I	CTCTTC	2 cut(s)	358, 909
EarI	CTCTTC	2 cut(s)	358, 909
EciI	GGCGGA	1 cut(s)	800
Eco130I	CCWWGG	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	615
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	909
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	3 cut(s)	30, 104, 569
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	3 cut(s)	26, 100, 565
FauI	CCCGC	3 cut(s)	26, 188, 571
Fnu4HI	GCNGC	6 cut(s)	58, 153, 272, 275, 368, 667
FokI	GGATG	2 cut(s)	401, 874
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	6 cut(s)	58, 153, 272, 275, 368, 667
FspBI	CTAG	3 cut(s)	140, 357, 937
GluI	GCNGC	6 cut(s)	58, 153, 272, 275, 368, 667
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	1 cut(s)	169
HgaI	GACGC	2 cut(s)	491, 796
Hin1II	CATG	3 cut(s)	30, 104, 569
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	3 cut(s)	122, 128, 841
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	3 cut(s)	346, 409, 531
Hpy188I	TCNGA	6 cut(s)	111, 127, 437, 513, 549, 898
Hpy188III	TCNNGA	5 cut(s)	132, 182, 467, 617, 911
Hpy8I	GTNNAC	3 cut(s)	346, 409, 531
HpyAV	CCTTC	2 cut(s)	100, 223
HpyCH4III	ACNGT	3 cut(s)	310, 692, 739
HpyCH4V	TGCA	6 cut(s)	323, 367, 402, 645, 746, 907
HpyF3I	CTNAG	3 cut(s)	191, 299, 635
Hsp92II	CATG	3 cut(s)	30, 104, 569
Kzo9I	GATC	4 cut(s)	184, 201, 238, 463
LmnI	GCTCC	3 cut(s)	73, 86, 281
LpnPI	CCDG	7 cut(s)	66, 182, 264, 291, 581, 732, 774
Lsp1109I	GCAGC	4 cut(s)	283, 286, 379, 678
LweI	GCATC	3 cut(s)	601, 894, 916
MaeI	CTAG	3 cut(s)	140, 357, 937
MaeIII	GTNAC	2 cut(s)	692, 883
MalI	GATC	4 cut(s)	186, 203, 240, 465
MboI	GATC	4 cut(s)	184, 201, 238, 463
MboII	GAAGA	6 cut(s)	107, 147, 345, 454, 731, 926
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	2 cut(s)	19, 584
MlsI	TGGCCA	1 cut(s)	490
MluCI	AATT	2 cut(s)	507, 702
MluNI	TGGCCA	1 cut(s)	490
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	869
MnlI	CCTC	8 cut(s)	166, 169, 228, 379, 431, 573, 613, 910
Mox20I	TGGCCA	1 cut(s)	490
Mph1103I	ATGCAT	1 cut(s)	909
MscI	TGGCCA	1 cut(s)	490
MslI	CAYNNNNRTG	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	490
MspA1I	CMGCKG	2 cut(s)	195, 669
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	2 cut(s)	170, 279
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	279
NciI	CCSGG	1 cut(s)	170
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	4 cut(s)	184, 201, 238, 463
NlaIII	CATG	3 cut(s)	30, 104, 569
NlaIV	GGNNCC	2 cut(s)	88, 583
NmuCI	GTSAC	2 cut(s)	692, 883
NsiI	ATGCAT	1 cut(s)	909
NspV	TTCGAA	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	615
PctI	GAATGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	122, 841
PkrI	GCNGC	6 cut(s)	59, 154, 273, 276, 369, 668
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	88, 583
PsuI	RGATCY	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	669
RsaI	GTAC	2 cut(s)	307, 793
RsaNI	GTAC	2 cut(s)	306, 792
RseI	CAYNNNNRTG	1 cut(s)	81
SatI	GCNGC	6 cut(s)	58, 153, 272, 275, 368, 667
Sau3AI	GATC	4 cut(s)	184, 201, 238, 463
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	170, 279
SduI	GDGCHC	2 cut(s)	19, 584
SfaNI	GCATC	3 cut(s)	601, 894, 916
SfcI	CTRYAG	1 cut(s)	683
Sfr274I	CTCGAG	1 cut(s)	615
SfuI	TTCGAA	1 cut(s)	93
SlaI	CTCGAG	1 cut(s)	615
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
Sse9I	AATT	2 cut(s)	507, 702
SsiI	CCGC	6 cut(s)	19, 57, 153, 195, 578, 811
SspMI	CTAG	3 cut(s)	140, 357, 937
StyD4I	CCNGG	2 cut(s)	168, 277
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	3 cut(s)	310, 692, 739
TaqI	TCGA	3 cut(s)	93, 616, 706
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	2 cut(s)	507, 702
TatI	WGTACW	1 cut(s)	305
TauI	GCSGC	2 cut(s)	60, 155
TfiI	GAWTC	2 cut(s)	122, 841
TscAI	CASTG	1 cut(s)	377
TseFI	GTSAC	2 cut(s)	692, 883
TseI	GCWGC	4 cut(s)	271, 274, 367, 666
Tsp45I	GTSAC	2 cut(s)	692, 883
TspDTI	ATGAA	3 cut(s)	176, 462, 467
TspRI	CASTG	1 cut(s)	377
XhoI	CTCGAG	1 cut(s)	615
XspI	CTAG	3 cut(s)	140, 357, 937
Zsp2I	ATGCAT	1 cut(s)	909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.