Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0016969

Physical Location & Seq

Genomic Coordinates Reverse (-)

3149749 .. 3166114

Gene Structure 16366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG046500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGAGATGAGTAGAGCCCGCTATCCATGGCGAGTGTTGACATTTGATGAGAACGGCGGCATACAACAAGTTTTGGAGCATTCTGGTGGAGCCTTCGAAGACCATGTGGTTCAGACTTGGGACGAATCGGATTCCCGAAGACTAGGTGTGGTTGCCGCCTCTATGAATGACCGGTCACTAGCTGTGGCTAGAAGAAATGGCACAGTTGAGGTTCGTGATCGTCTTAGCGGGCAGATCGGTCTCACCTTCCCTCATCTCACTAATGAGAGTGATCCTTTTGTGGGGCTACACCTATTTACAAAGCAGCAGCCAGGAGCATTTGGGTCATTGCTTAGTTGTACAGTTCAAGGAAATGCAAGGATAATATCTTTTGAAGTGGACAACTCTTCTAGGACTTTGCAGCAGTGGAAAGTGAGAGAGGATGTCTTGTGTTGCAAGGTTGACGGGAGTGAACGTGTTTGTCTATTCGGAGGGAAGAATGAAATGAATATATGGGATCTTGAATATAATGTGAAGTCTTGGCCAACAAAAGAGCGTCCAATTCAGAGTAGAAAACTTTGGTGGACATCTGCCACCTTTCTGACAAGAGATAATCCTCATGTATTTGTGGCGGGCACCAACAAAAATCAGGTTCATATTTATGATGCTCGAGAGGATATTGATGAGCCTTGCAACATATATGACATACAGAGCAGCTGTCTAAAAAGGCTACAGAACCGTGACACTCCAATTCGAGCTATTGCTGAAGATAAAGATGGTTATACGGTTTATGCAGGCAACGATTGTGGTAATCTTGTTTCTTTGGATACACGCACAGCATCATCGCAGAAGTTGTTGGACAAACATGGAATTAGGTGGAAGGGAGAAGTACCAAATGCTCCTGACAACGGCCACCGTGGCCGTGGCTGCGGACGTAGCGCAACTGGTGAAGCTTTAACTGACAGGCCTCCTTTACCAAAAGGACATGGTTATCTTTCTTTGGGAACCTGGGCGGATGCGCATGCATCATCATGGAAGTTGTTGGCAAAACATGGATTAATTAGGAGCAAAGGAGAAGCACCAAATGCTCCTGACAACAGCCACCGTGGCTGCGGCCCTAGTGCAACTGGTGAAGGTTTAACTGACAGGCCTCCTTTACCAAAGGGACATGGTTATCTTTCTTTGGGAACCTCGGTGGATAAGCATGGTAATGTCCTTGAAATACCTTCTAGCCGTTCTGCTCTCATGTATTGTAATCTTTGTTGTAAAGAAGGAGACCACTGGCCCCGAAATTGTCCAGAATGGCATCAACCAGAACCAACATCTGCTGTTCAGACCAAGAGAAAAGGATCAAAATCAGTTGTTCAGACACAGAGAAAGAAAAAATCAAAATCCGCTGCTGGCACCAACAACAGCTCATATGAGACCAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0022613 GO:0030684 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

471

Amino Acids

52.25

Weight (kDa)

8.69

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016969)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c30g0501231 RchiOBHm_Chr3g0452771 RchiOBHm_Chr3g0452851
rosa_laevigata	RLG00000025569
rosa_roxburghii	Rroxscaffold_6G00429830
rosa_rugosa	Rorug02G0643100
rosa_samantha	Rh3AG045600 Rh3AG045800 Rh3BG048000 Rh3BG048200 Rh3CG046500 Rh3CG046700 Rh3DG047100 Rh3DG047600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	999
AccB1I	GGYRCC	2 cut(s)	614, 1382
AciI	CCGC	9 cut(s)	19, 57, 156, 228, 611, 909, 992, 1092, 1374
AclWI	GGATC	3 cut(s)	266, 504, 1336
AcoI	YGGCCR	3 cut(s)	521, 889, 898
AcuI	CTGAAG	1 cut(s)	765
AfaI	GTAC	2 cut(s)	340, 870
AfiI	CCNNNNNNNGG	2 cut(s)	281, 887
AflIII	ACRYGT	1 cut(s)	454
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	4 cut(s)	347, 374, 503, 1199
AjnI	CCWGG	2 cut(s)	310, 986
AluBI	AGCT	5 cut(s)	182, 696, 737, 932, 1395
AluI	AGCT	5 cut(s)	182, 696, 737, 932, 1395
Alw26I	GTCTC	3 cut(s)	245, 1248, 1397
AlwI	GGATC	3 cut(s)	266, 504, 1336
Ama87I	CYCGRG	1 cut(s)	648
AoxI	GGCC	7 cut(s)	521, 889, 898, 944, 1093, 1127, 1262
ApeKI	GCWGC	7 cut(s)	304, 307, 400, 693, 906, 1089, 1376
AseI	ATTAAT	1 cut(s)	1037
AsiGI	ACCGGT	1 cut(s)	171
AspLEI	GCGC	2 cut(s)	920, 1000
AspS9I	GGNCC	2 cut(s)	1094, 1263
AsuHPI	GGTGA	3 cut(s)	235, 938, 1121
AsuII	TTCGAA	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	648
BaeGI	GKGCMC	1 cut(s)	617
BalI	TGGCCA	1 cut(s)	523
BanI	GGYRCC	2 cut(s)	614, 1382
BanII	GRGCYC	1 cut(s)	19
BbsI	GAAGAC	2 cut(s)	105, 145
BbvI	GCAGC	7 cut(s)	316, 319, 412, 705, 893, 1076, 1363
BccI	CCATC	1 cut(s)	749
BceAI	ACGGC	4 cut(s)	70, 885, 904, 1197
BciT130I	CCWGG	2 cut(s)	312, 988
BciVI	GTATCC	1 cut(s)	799
BcoDI	GTCTC	3 cut(s)	245, 1248, 1397
BfaI	CTAG	6 cut(s)	143, 179, 189, 390, 1098, 1209
BfmI	CTRYAG	1 cut(s)	710
BfuI	GTATCC	1 cut(s)	799
BglI	GCCNNNNNGGC	2 cut(s)	897, 1086
Bme1390I	CCNGG	2 cut(s)	312, 988
BmeT110I	CYCGRG	1 cut(s)	648
BmgT120I	GGNCC	2 cut(s)	1094, 1263
BmiI	GGNNCC	6 cut(s)	91, 616, 985, 1168, 1265, 1384
BmrFI	CCNGG	2 cut(s)	312, 988
BmsI	GCATC	5 cut(s)	634, 827, 985, 1013, 1294
BpiI	GAAGAC	2 cut(s)	105, 145
Bpu14I	TTCGAA	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	1333
BsaI	GGTCTC	3 cut(s)	245, 1248, 1397
BsaJI	CCNNGG	6 cut(s)	26, 895, 901, 987, 1084, 1170
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 887
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	3 cut(s)	928, 1111, 1265
Bse3DI	GCAATG	1 cut(s)	326
Bse8I	GATNNNNATC	1 cut(s)	1333
BseBI	CCWGG	2 cut(s)	312, 988
BseDI	CCNNGG	6 cut(s)	26, 895, 901, 987, 1084, 1170
BseGI	GGATG	2 cut(s)	427, 1000
BseJI	GATNNNNATC	1 cut(s)	1333
BseLI	CCNNNNNNNGG	2 cut(s)	281, 887
BseMI	GCAATG	1 cut(s)	326
BseNI	ACTGG	3 cut(s)	928, 1111, 1265
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	7 cut(s)	316, 319, 412, 705, 893, 1076, 1363
BshFI	GGCC	7 cut(s)	523, 891, 900, 946, 1095, 1129, 1264
BshNI	GGYRCC	2 cut(s)	614, 1382
BshTI	ACCGGT	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	648
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	2 cut(s)	134, 1158
BslI	CCNNNNNNNGG	2 cut(s)	281, 887
BsmAI	GTCTC	3 cut(s)	245, 1248, 1397
BsmFI	GGGAC	2 cut(s)	134, 1158
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	7 cut(s)	523, 891, 900, 946, 1095, 1129, 1264
Bso31I	GGTCTC	3 cut(s)	245, 1248, 1397
BsoBI	CYCGRG	1 cut(s)	648
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	2 cut(s)	19, 617
Bsp1407I	TGTACA	1 cut(s)	338
Bsp143I	GATC	5 cut(s)	217, 234, 271, 496, 1328
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	9 cut(s)	19, 57, 156, 228, 611, 909, 992, 1092, 1374
BspANI	GGCC	7 cut(s)	523, 891, 900, 946, 1095, 1129, 1264
BspLI	GGNNCC	6 cut(s)	91, 616, 985, 1168, 1265, 1384
BspPI	GGATC	3 cut(s)	266, 504, 1336
BspT104I	TTCGAA	1 cut(s)	96
BspT107I	GGYRCC	2 cut(s)	614, 1382
BspTNI	GGTCTC	3 cut(s)	245, 1248, 1397
BsrDI	GCAATG	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	338
BsrI	ACTGG	3 cut(s)	928, 1111, 1265
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	6 cut(s)	26, 895, 901, 987, 1084, 1170
BssMI	GATC	5 cut(s)	217, 234, 271, 496, 1328
BssT1I	CCWWGG	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	312, 988
Bst4CI	ACNGT	6 cut(s)	205, 343, 719, 766, 896, 1085
Bst6I	CTCTTC	1 cut(s)	391
BstAPI	GCANNNNNTGC	1 cut(s)	1064
BstAUI	TGTACA	1 cut(s)	338
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	6 cut(s)	19, 230, 613, 775, 1002, 1381
BstDEI	CTNAG	2 cut(s)	224, 332
BstDSI	CCRYGG	4 cut(s)	26, 895, 901, 1084
BstF5I	GGATG	2 cut(s)	427, 1000
BstHHI	GCGC	2 cut(s)	920, 1000
BstKTI	GATC	5 cut(s)	220, 237, 274, 499, 1331
BstMAI	GTCTC	3 cut(s)	245, 1248, 1397
BstMBI	GATC	5 cut(s)	217, 234, 271, 496, 1328
BstMWI	GCNNNNNNNGC	5 cut(s)	897, 906, 915, 1064, 1086
BstNI	CCWGG	2 cut(s)	312, 988
BstNSI	RCATGY	1 cut(s)	1004
BstSCI	CCNGG	2 cut(s)	310, 986
BstSFI	CTRYAG	1 cut(s)	710
BstSLI	GKGCMC	1 cut(s)	617
BstV1I	GCAGC	7 cut(s)	316, 319, 412, 705, 893, 1076, 1363
BstV2I	GAAGAC	2 cut(s)	105, 145
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	7 cut(s)	523, 891, 900, 946, 1095, 1129, 1264
BtgI	CCRYGG	4 cut(s)	26, 895, 901, 1084
BtgZI	GCGATG	1 cut(s)	807
BtsCI	GGATG	2 cut(s)	427, 1000
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	2 cut(s)	410, 1258
Cac8I	GCNNGC	6 cut(s)	19, 230, 613, 775, 1002, 1381
CfoI	GCGC	2 cut(s)	920, 1000
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	1094, 1263
CseI	GACGC	1 cut(s)	524
Csp6I	GTAC	2 cut(s)	339, 869
CspAI	ACCGGT	1 cut(s)	171
CspCI	CAANNNNNGTGG	2 cut(s)	766, 801
CviQI	GTAC	2 cut(s)	339, 869
DdeI	CTNAG	2 cut(s)	224, 332
DpnI	GATC	5 cut(s)	219, 236, 273, 498, 1330
DpnII	GATC	5 cut(s)	217, 234, 271, 496, 1328
EaeI	YGGCCR	3 cut(s)	521, 889, 898
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
EciI	GGCGGA	1 cut(s)	1007
Eco130I	CCWWGG	1 cut(s)	26
Eco147I	AGGCCT	2 cut(s)	946, 1129
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	3 cut(s)	245, 1248, 1397
Eco57I	CTGAAG	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	648
EcoRII	CCWGG	2 cut(s)	310, 986
EcoT14I	CCWWGG	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	1006
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	26
FaqI	GGGAC	2 cut(s)	134, 1158
FauI	CCCGC	3 cut(s)	26, 221, 604
FauNDI	CATATG	1 cut(s)	1399
FokI	GGATG	2 cut(s)	434, 1007
FriOI	GRGCYC	1 cut(s)	19
FspAI	RTGCGCAY	1 cut(s)	999
FspBI	CTAG	6 cut(s)	143, 179, 189, 390, 1098, 1209
FspI	TGCGCA	1 cut(s)	999
GlaI	GCGC	2 cut(s)	919, 999
HaeIII	GGCC	7 cut(s)	523, 891, 900, 946, 1095, 1129, 1264
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	1 cut(s)	524
HhaI	GCGC	2 cut(s)	920, 1000
Hin6I	GCGC	2 cut(s)	918, 998
HinP1I	GCGC	2 cut(s)	918, 998
HincII	GTYRAC	2 cut(s)	39, 442
HindII	GTYRAC	2 cut(s)	39, 442
HindIII	AAGCTT	1 cut(s)	930
HinfI	GANTC	2 cut(s)	125, 131
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	3 cut(s)	235, 938, 1121
Hpy166II	GTNNAC	5 cut(s)	39, 379, 442, 452, 564
Hpy188I	TCNGA	7 cut(s)	114, 130, 470, 546, 582, 1314, 1347
Hpy188III	TCNNGA	7 cut(s)	135, 215, 500, 650, 881, 1070, 1277
Hpy8I	GTNNAC	5 cut(s)	39, 379, 442, 452, 564
HpyAV	CCTTC	6 cut(s)	103, 256, 853, 1106, 1215, 1244
HpyCH4III	ACNGT	6 cut(s)	205, 343, 719, 766, 896, 1085
HpyCH4IV	ACGT	2 cut(s)	454, 913
HpyCH4V	TGCA	7 cut(s)	356, 400, 435, 672, 773, 1004, 1103
HpyF10VI	GCNNNNNNNGC	5 cut(s)	897, 906, 915, 1064, 1086
HpyF3I	CTNAG	2 cut(s)	224, 332
HpySE526I	ACGT	2 cut(s)	454, 913
HspAI	GCGC	2 cut(s)	918, 998
Kzo9I	GATC	5 cut(s)	217, 234, 271, 496, 1328
LmnI	GCTCC	6 cut(s)	76, 89, 314, 883, 1044, 1072
Lsp1109I	GCAGC	7 cut(s)	316, 319, 412, 705, 893, 1076, 1363
LweI	GCATC	5 cut(s)	634, 827, 985, 1013, 1294
MaeI	CTAG	6 cut(s)	143, 179, 189, 390, 1098, 1209
MaeII	ACGT	2 cut(s)	454, 913
MaeIII	GTNAC	2 cut(s)	174, 719
MalI	GATC	5 cut(s)	219, 236, 273, 498, 1330
MboI	GATC	5 cut(s)	217, 234, 271, 496, 1328
MboII	GAAGA	6 cut(s)	110, 150, 204, 378, 487, 758
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	2 cut(s)	19, 617
MlsI	TGGCCA	1 cut(s)	523
MluCI	AATT	5 cut(s)	540, 729, 849, 1038, 1270
MluNI	TGGCCA	1 cut(s)	523
MmeI	TCCRAC	1 cut(s)	816
Mox20I	TGGCCA	1 cut(s)	523
Mph1103I	ATGCAT	1 cut(s)	1006
MscI	TGGCCA	1 cut(s)	523
MseI	TTAA	3 cut(s)	935, 1037, 1118
MslI	CAYNNNNRTG	4 cut(s)	84, 639, 1009, 1188
Msp20I	TGGCCA	1 cut(s)	523
MspA1I	CMGCKG	2 cut(s)	696, 1376
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	2 cut(s)	312, 988
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	2 cut(s)	312, 988
MwoI	GCNNNNNNNGC	5 cut(s)	897, 906, 915, 1064, 1086
NcoI	CCATGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	1399
NdeII	GATC	5 cut(s)	217, 234, 271, 496, 1328
NlaIV	GGNNCC	6 cut(s)	91, 616, 985, 1168, 1265, 1384
NmuCI	GTSAC	2 cut(s)	174, 719
NsbI	TGCGCA	1 cut(s)	999
NsiI	ATGCAT	1 cut(s)	1006
NspI	RCATGY	1 cut(s)	1004
NspV	TTCGAA	1 cut(s)	96
PaeI	GCATGC	1 cut(s)	1004
PaeR7I	CTCGAG	1 cut(s)	648
PceI	AGGCCT	2 cut(s)	946, 1129
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	125, 131
PinAI	ACCGGT	1 cut(s)	171
PshBI	ATTAAT	1 cut(s)	1037
Psp6I	CCWGG	2 cut(s)	310, 986
PspGI	CCWGG	2 cut(s)	310, 986
PspN4I	GGNNCC	6 cut(s)	91, 616, 985, 1168, 1265, 1384
PspPI	GGNCC	2 cut(s)	1094, 1263
PsuI	RGATCY	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	696
RsaI	GTAC	2 cut(s)	340, 870
RsaNI	GTAC	2 cut(s)	339, 869
RseI	CAYNNNNRTG	4 cut(s)	84, 639, 1009, 1188
SaqAI	TTAA	3 cut(s)	935, 1037, 1118
Sau3AI	GATC	5 cut(s)	217, 234, 271, 496, 1328
Sau96I	GGNCC	2 cut(s)	1094, 1263
ScrFI	CCNGG	2 cut(s)	312, 988
SduI	GDGCHC	2 cut(s)	19, 617
SfaNI	GCATC	5 cut(s)	634, 827, 985, 1013, 1294
SfcI	CTRYAG	1 cut(s)	710
SfiI	GGCCNNNNNGGCC	1 cut(s)	897
Sfr274I	CTCGAG	1 cut(s)	648
SfuI	TTCGAA	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	648
SmiMI	CAYNNNNRTG	4 cut(s)	84, 639, 1009, 1188
SmlI	CTYRAG	1 cut(s)	648
SmoI	CTYRAG	1 cut(s)	648
SphI	GCATGC	1 cut(s)	1004
Sse9I	AATT	5 cut(s)	540, 729, 849, 1038, 1270
SseBI	AGGCCT	2 cut(s)	946, 1129
SsiI	CCGC	9 cut(s)	19, 57, 156, 228, 611, 909, 992, 1092, 1374
SspMI	CTAG	6 cut(s)	143, 179, 189, 390, 1098, 1209
StuI	AGGCCT	2 cut(s)	946, 1129
StyD4I	CCNGG	2 cut(s)	310, 986
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	6 cut(s)	205, 343, 719, 766, 896, 1085
TaiI	ACGT	2 cut(s)	457, 916
TaqI	TCGA	3 cut(s)	96, 649, 733
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	5 cut(s)	540, 729, 849, 1038, 1270
TatI	WGTACW	1 cut(s)	338
TauI	GCSGC	3 cut(s)	60, 158, 1095
TfiI	GAWTC	2 cut(s)	125, 131
Tru1I	TTAA	3 cut(s)	935, 1037, 1118
Tru9I	TTAA	3 cut(s)	935, 1037, 1118
TscAI	CASTG	2 cut(s)	410, 1265
TseFI	GTSAC	2 cut(s)	174, 719
TseI	GCWGC	7 cut(s)	304, 307, 400, 693, 906, 1089, 1376
Tsp45I	GTSAC	2 cut(s)	174, 719
TspDTI	ATGAA	4 cut(s)	179, 495, 500, 623
TspRI	CASTG	2 cut(s)	410, 1265
VspI	ATTAAT	1 cut(s)	1037
XceI	RCATGY	1 cut(s)	1004
XcmI	CCANNNNNNNNNTGG	1 cut(s)	899
XhoI	CTCGAG	1 cut(s)	648
XspI	CTAG	6 cut(s)	143, 179, 189, 390, 1098, 1209
Zsp2I	ATGCAT	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.