RchiOBHm_Chr1g0330681

SPFH domain / Band 7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017776
Physical Location & Seq
Reverse (-)
20479500 .. 20481454
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55982

Sequence Viewer

Length: 750 bp
ATGATTTTGCCTAAGCTTGCGTTGAGATCTCTGAGGCCGCTGCACTCCAGAGTCCTCGCTCGCAGTCGTTTTGTCCCGTCACACCACCACGGCGATGATGTCATCAACCTCAGTCCCCCGATTCATTGGAGTGGTGGGTTTCTGGTGCCTAATACCCAGGCGGTTGTGATCGAGCGATTTGGAAAGTACCCCAAGGTGAAGTGGCCTGGAATACGTCGCTTAATTCCATTTGTTGATAAAATCGTAAACGTGGTTTCCTTGAGAGAAAAGACTATTCATATTCCTGCGCAGAGCGCTACGACCAGCAATTCTATTCCCCTTTCGGTTTCTGCGGAATTTACAATGATGATTTCGGACCCTGTGCTGGCCTCTTATGAGGTTGACAATCCCGTGGTCGAGACTATTGCTCTTGCCCAGCGTACCCTACGTTCTGTAATTGGGCAAGTCACTTTCGAGCACATAGTACAGAATCATGGTTACTTTCTTGATCGTCTAATGTTTGCACTCATCGACGGGGCAGGGAGATGGGGAATTACCTGTCGGAGCTTTGACATAAATGACATAGCTGTTTCACCTGAATTTAAAAAAGCTCTTGAGGACCGGAAGGCAGAGAAACAAAAGAGAGGATTGGCAGAGGTTCTTAGCATTTCGTCTAATGCCCTGACAAGAGCTTATGGGTTAGAGGGTAAAGCTATTCCAGACACCTGTTTGCTCGGTGCTTCTCAATTCCATGCACCAAACCGGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

249

Amino Acids

27.65

Weight (kDa)

9.69

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 49 - 210 2.6e-23 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017776)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330681
rosa_laevigata RLG00000030091
rosa_multiflora Rmu_sc0002725.1_g000003 Rmu_sc0004401.1_g000006
rosa_roxburghii Rroxscaffold_3G00227450 Rroxscaffold_4G00319780
rosa_rugosa Rorug01G0090400
rosa_samantha Rh1AG110100 Rh1AG110900 Rh1CG104800 Rh1DG114000
rosa_wichuraiana Rw1G009020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 145
AciI CCGC 3 cut(s) 38, 161, 332
AcsI RAATTY 2 cut(s) 335, 578
AfaI GTAC 3 cut(s) 188, 421, 465
AfeI AGCGCT 1 cut(s) 295
AfiI CCNNNNNNNGG 1 cut(s) 364
AjnI CCWGG 2 cut(s) 156, 205
AluBI AGCT 6 cut(s) 16, 546, 566, 590, 671, 692
AluI AGCT 6 cut(s) 16, 546, 566, 590, 671, 692
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 1 cut(s) 392
Aor51HI AGCGCT 1 cut(s) 295
AoxI GGCC 3 cut(s) 35, 203, 366
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 2 cut(s) 335, 578
AspLEI GCGC 2 cut(s) 289, 296
AspS9I GGNCC 2 cut(s) 355, 598
AsuHPI GGTGA 2 cut(s) 208, 564
AvaII GGWCC 2 cut(s) 355, 598
BanI GGYRCC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 519
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 386, 420
BciT130I CCWGG 2 cut(s) 158, 207
BcoDI GTCTC 1 cut(s) 392
BfoI RGCGCY 1 cut(s) 297
BglII AGATCT 1 cut(s) 26
BisI GCNGC 2 cut(s) 38, 41
BlsI GCNGC 2 cut(s) 39, 42
Bme1390I CCNGG 2 cut(s) 158, 207
Bme18I GGWCC 2 cut(s) 355, 598
BmgT120I GGNCC 2 cut(s) 355, 598
BmiI GGNNCC 2 cut(s) 147, 357
BmrFI CCNGG 2 cut(s) 158, 207
BpmI CTGGAG 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 12
BpuEI CTTGAG 2 cut(s) 280, 614
BsaJI CCNNGG 4 cut(s) 88, 156, 192, 390
BsaWI WCCGGW 2 cut(s) 600, 741
Bsc4I CCNNNNNNNGG 1 cut(s) 364
BseBI CCWGG 2 cut(s) 158, 207
BseDI CCNNGG 4 cut(s) 88, 156, 192, 390
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 2 cut(s) 23, 124
BseXI GCAGC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 414
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 3 cut(s) 37, 205, 368
BshNI GGYRCC 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 459
BsiSI CCGG 2 cut(s) 601, 742
BslFI GGGAC 2 cut(s) 59, 99
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 2 cut(s) 59, 99
BsnI GGCC 3 cut(s) 37, 205, 368
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 3 cut(s) 26, 168, 487
BspACI CCGC 3 cut(s) 38, 161, 332
BspANI GGCC 3 cut(s) 37, 205, 368
BspCNI CTCAG 2 cut(s) 24, 123
BspLI GGNNCC 2 cut(s) 147, 357
BspT107I GGYRCC 1 cut(s) 145
BssECI CCNNGG 4 cut(s) 88, 156, 192, 390
BssMI GATC 3 cut(s) 26, 168, 487
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 158, 207
BstC8I GCNNGC 3 cut(s) 18, 61, 366
BstDEI CTNAG 5 cut(s) 12, 32, 110, 641, 747
BstDSI CCRYGG 2 cut(s) 88, 390
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 2 cut(s) 289, 296
BstKTI GATC 3 cut(s) 29, 171, 490
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 3 cut(s) 26, 168, 487
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNI CCWGG 2 cut(s) 158, 207
BstSCI CCNGG 2 cut(s) 156, 205
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BsuRI GGCC 3 cut(s) 37, 205, 368
BtgI CCRYGG 2 cut(s) 88, 390
BtgZI GCGATG 1 cut(s) 108
Cac8I GCNNGC 3 cut(s) 18, 61, 366
CfoI GCGC 2 cut(s) 289, 296
Cfr13I GGNCC 2 cut(s) 355, 598
Csp6I GTAC 3 cut(s) 187, 420, 464
CviAII CATG 2 cut(s) 473, 731
CviJI RGCY 9 cut(s) 16, 37, 205, 368, 546, 566, 590, 671, 692
CviKI_1 RGCY 9 cut(s) 16, 37, 205, 368, 546, 566, 590, 671, 692
CviQI GTAC 3 cut(s) 187, 420, 464
DdeI CTNAG 5 cut(s) 12, 32, 110, 641, 747
DpnI GATC 3 cut(s) 28, 170, 489
DpnII GATC 3 cut(s) 26, 168, 487
DraI TTTAAA 1 cut(s) 583
Eco130I CCWWGG 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 355, 598
Eco47III AGCGCT 1 cut(s) 295
EcoRII CCWGG 2 cut(s) 156, 205
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 476, 734
FaiI YATR 8 cut(s) 279, 375, 461, 474, 554, 563, 675, 732
FaqI GGGAC 2 cut(s) 59, 99
FatI CATG 2 cut(s) 472, 730
Fnu4HI GCNGC 2 cut(s) 38, 41
Fsp4HI GCNGC 2 cut(s) 38, 41
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 2 cut(s) 288, 295
GluI GCNGC 2 cut(s) 38, 41
GsaI CCCAGC 1 cut(s) 418
GsuI CTGGAG 1 cut(s) 31
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 3 cut(s) 37, 205, 368
HapII CCGG 2 cut(s) 601, 742
HhaI GCGC 2 cut(s) 289, 296
Hin1II CATG 2 cut(s) 476, 734
Hin6I GCGC 2 cut(s) 287, 294
HinP1I GCGC 2 cut(s) 287, 294
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 3 cut(s) 51, 121, 469
HpaII CCGG 2 cut(s) 601, 742
HphI GGTGA 2 cut(s) 208, 564
Hpy166II GTNNAC 2 cut(s) 247, 382
Hpy188I TCNGA 3 cut(s) 33, 355, 543
Hpy188III TCNNGA 5 cut(s) 48, 397, 485, 593, 698
Hpy8I GTNNAC 2 cut(s) 247, 382
Hpy99I CGWCG 2 cut(s) 219, 515
HpyAV CCTTC 1 cut(s) 598
HpyCH4IV ACGT 3 cut(s) 214, 249, 427
HpyCH4V TGCA 3 cut(s) 43, 503, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 5 cut(s) 12, 32, 110, 641, 747
HpySE526I ACGT 3 cut(s) 214, 249, 427
Hsp92II CATG 2 cut(s) 476, 734
HspAI GCGC 2 cut(s) 287, 294
Kzo9I GATC 3 cut(s) 26, 168, 487
LmnI GCTCC 1 cut(s) 543
Lsp1109I GCAGC 1 cut(s) 27
MaeII ACGT 3 cut(s) 214, 249, 427
MaeIII GTNAC 3 cut(s) 78, 445, 476
MalI GATC 3 cut(s) 28, 170, 489
MboI GATC 3 cut(s) 26, 168, 487
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 7 cut(s) 222, 307, 335, 435, 531, 578, 725
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 9 cut(s) 27, 65, 119, 370, 379, 589, 617, 628, 676
MseI TTAA 2 cut(s) 221, 582
MslI CAYNNNNRTG 2 cut(s) 93, 129
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 2 cut(s) 601, 742
MspR9I CCNGG 2 cut(s) 158, 207
MvaI CCWGG 2 cut(s) 158, 207
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 3 cut(s) 26, 168, 487
NlaIII CATG 2 cut(s) 476, 734
NlaIV GGNNCC 2 cut(s) 147, 357
NmuCI GTSAC 2 cut(s) 78, 445
NsbI TGCGCA 1 cut(s) 288
PfeI GAWTC 2 cut(s) 121, 469
PkrI GCNGC 2 cut(s) 39, 42
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 156, 205
PspFI CCCAGC 1 cut(s) 414
PspGI CCWGG 2 cut(s) 156, 205
PspN4I GGNNCC 2 cut(s) 147, 357
PspPI GGNCC 2 cut(s) 355, 598
PsrI GAACNNNNNNTAC 2 cut(s) 412, 444
PsuI RGATCY 1 cut(s) 26
RsaI GTAC 3 cut(s) 188, 421, 465
RsaNI GTAC 3 cut(s) 187, 420, 464
RseI CAYNNNNRTG 2 cut(s) 93, 129
SaqAI TTAA 2 cut(s) 221, 582
SatI GCNGC 2 cut(s) 38, 41
Sau3AI GATC 3 cut(s) 26, 168, 487
Sau96I GGNCC 2 cut(s) 355, 598
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 2 cut(s) 158, 207
SduI GDGCHC 1 cut(s) 459
SinI GGWCC 2 cut(s) 355, 598
SmiMI CAYNNNNRTG 2 cut(s) 93, 129
SmlI CTYRAG 2 cut(s) 259, 593
SmoI CTYRAG 2 cut(s) 259, 593
Sse9I AATT 7 cut(s) 222, 307, 335, 435, 531, 578, 725
SsiI CCGC 3 cut(s) 38, 161, 332
StyD4I CCNGG 2 cut(s) 156, 205
StyI CCWWGG 1 cut(s) 192
TaiI ACGT 3 cut(s) 217, 252, 430
TaqI TCGA 4 cut(s) 171, 396, 453, 510
TasI AATT 7 cut(s) 222, 307, 335, 435, 531, 578, 725
TatI WGTACW 1 cut(s) 463
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 2 cut(s) 121, 469
Tru1I TTAA 2 cut(s) 221, 582
Tru9I TTAA 2 cut(s) 221, 582
TseFI GTSAC 2 cut(s) 78, 445
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 2 cut(s) 78, 445
TspDTI ATGAA 2 cut(s) 113, 266
VpaK11BI GGWCC 2 cut(s) 355, 598
XapI RAATTY 2 cut(s) 335, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.