Rh1DG114000

SPFH domain / Band 7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017776
Physical Location & Seq
Reverse (-)
20918394 .. 20920181
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG114000.1

Sequence Viewer

Length: 747 bp
ATGAGTTTGCCTGCGTTGAGATCTCTGAGGCCGCTGCACTCCAGAGTCCTCGCTCGCAGTCGTTTTGTCCCCTCACACGACCACGGCGATGATGTCATCAACCTCAGTCCTCCCCCGATTCATTGGAGTGGTGGGTTTCTGGTGCCTAATACCCAGGCGGTTGTGATCGAGCGATTTGGAAAGTATCCCAAGGTGAAGTGGCCTGGAATACGTCGCTTAATTCCATTTGTTGATAAAATCGTAAACGTGGTTTCCTTGAGAGAAAAGACTATTCATATTCCCGCGCAGAACGCTACGACCAGCAATTCTATTCCCCTTTCGGTTTCTGCGGAATTTACAATGAGGATTTCGGACCCTGTGCTGGCCTCTTATGAGGTTGACAATCCCGTGGTCGAGACTATTGCTCTTGCCCAGCGTACCCTACGTTCTGTAATTGGGCAAGTCACTTTCCAGCACATAGTACAGAATCATGGTTACTTTCATAATTGTCTAATTTTTGCACTCATCCAGGGGGCAGGGAGATGGGGAATTGCCTGTGGGAGCTTTGAGATAAATGACATAGCTGTTTCACCTGAATTTAAAAAAGCTCTTGAGGACCGGAAGGCAGAGAAACAAAAGAGAGGAGTGGCAGAGGTTCTTAGCATTTCGTCTAATGCCCTGACAAGAGCTTATGGGTTAGAGGGTAAAGCTATTCCAGACACCTGTTTGCTCCGTGCTTCTCAATTCCATGCACCAAACCGGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

248

Amino Acids

27.44

Weight (kDa)

9.75

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 48 - 210 3.7e-23 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017776)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330681
rosa_laevigata RLG00000030091
rosa_multiflora Rmu_sc0002725.1_g000003 Rmu_sc0004401.1_g000006
rosa_roxburghii Rroxscaffold_3G00227450 Rroxscaffold_4G00319780
rosa_rugosa Rorug01G0090400
rosa_samantha Rh1AG110100 Rh1AG110900 Rh1CG104800 Rh1DG114000
rosa_wichuraiana Rw1G009020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AccII CGCG 1 cut(s) 284
AciI CCGC 4 cut(s) 32, 158, 282, 329
AcsI RAATTY 2 cut(s) 332, 575
AfaI GTAC 2 cut(s) 418, 462
AfiI CCNNNNNNNGG 1 cut(s) 361
AjnI CCWGG 3 cut(s) 153, 202, 507
AluBI AGCT 5 cut(s) 543, 563, 587, 668, 689
AluI AGCT 5 cut(s) 543, 563, 587, 668, 689
Alw26I GTCTC 1 cut(s) 389
AoxI GGCC 3 cut(s) 29, 200, 363
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 2 cut(s) 332, 575
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 2 cut(s) 352, 595
AsuHPI GGTGA 2 cut(s) 205, 561
AvaII GGWCC 2 cut(s) 352, 595
BanI GGYRCC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 21
BccI CCATC 1 cut(s) 516
BceAI ACGGC 1 cut(s) 100
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 3 cut(s) 155, 204, 509
BciVI GTATCC 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 389
BfuI GTATCC 1 cut(s) 195
BglII AGATCT 1 cut(s) 20
BisI GCNGC 2 cut(s) 32, 35
BlsI GCNGC 2 cut(s) 33, 36
Bme1390I CCNGG 3 cut(s) 155, 204, 509
Bme18I GGWCC 2 cut(s) 352, 595
BmgT120I GGNCC 2 cut(s) 352, 595
BmiI GGNNCC 2 cut(s) 144, 354
BmrFI CCNGG 3 cut(s) 155, 204, 509
BpmI CTGGAG 1 cut(s) 25
BpuEI CTTGAG 2 cut(s) 277, 611
BsaJI CCNNGG 5 cut(s) 82, 153, 189, 387, 508
BsaWI WCCGGW 2 cut(s) 597, 738
Bsc4I CCNNNNNNNGG 1 cut(s) 361
BseBI CCWGG 3 cut(s) 155, 204, 509
BseDI CCNNGG 5 cut(s) 82, 153, 189, 387, 508
BseGI GGATG 1 cut(s) 504
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 17, 118
BseRI GAGGAG 1 cut(s) 636
BseXI GCAGC 1 cut(s) 21
BseYI CCCAGC 1 cut(s) 411
BsgI GTGCAG 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 3 cut(s) 31, 202, 365
BshNI GGYRCC 1 cut(s) 142
BsiSI CCGG 2 cut(s) 598, 739
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 53
BsnI GGCC 3 cut(s) 31, 202, 365
Bsp143I GATC 2 cut(s) 20, 165
BspACI CCGC 4 cut(s) 32, 158, 282, 329
BspANI GGCC 3 cut(s) 31, 202, 365
BspCNI CTCAG 2 cut(s) 18, 117
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 144, 354
BspT107I GGYRCC 1 cut(s) 142
BssECI CCNNGG 5 cut(s) 82, 153, 189, 387, 508
BssMI GATC 2 cut(s) 20, 165
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 3 cut(s) 155, 204, 509
BstC8I GCNNGC 3 cut(s) 12, 55, 363
BstDEI CTNAG 4 cut(s) 26, 104, 638, 744
BstDSI CCRYGG 2 cut(s) 82, 387
BstF5I GGATG 1 cut(s) 504
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 2 cut(s) 23, 168
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 2 cut(s) 20, 165
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 3 cut(s) 155, 204, 509
BstSCI CCNGG 3 cut(s) 153, 202, 507
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuI GTATCC 1 cut(s) 195
BsuRI GGCC 3 cut(s) 31, 202, 365
BtgI CCRYGG 2 cut(s) 82, 387
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 1 cut(s) 504
Cac8I GCNNGC 3 cut(s) 12, 55, 363
CfoI GCGC 1 cut(s) 286
Cfr13I GGNCC 2 cut(s) 352, 595
Csp6I GTAC 2 cut(s) 417, 461
CviAII CATG 2 cut(s) 470, 728
CviJI RGCY 8 cut(s) 31, 202, 365, 543, 563, 587, 668, 689
CviKI_1 RGCY 8 cut(s) 31, 202, 365, 543, 563, 587, 668, 689
CviQI GTAC 2 cut(s) 417, 461
DdeI CTNAG 4 cut(s) 26, 104, 638, 744
DpnI GATC 2 cut(s) 22, 167
DpnII GATC 2 cut(s) 20, 165
DraI TTTAAA 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 189
Eco47I GGWCC 2 cut(s) 352, 595
EcoRII CCWGG 3 cut(s) 153, 202, 507
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 2 cut(s) 473, 731
FaiI YATR 8 cut(s) 276, 372, 458, 471, 483, 560, 672, 729
FaqI GGGAC 1 cut(s) 53
FatI CATG 2 cut(s) 469, 727
FauI CCCGC 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 32, 35
FokI GGATG 1 cut(s) 491
Fsp4HI GCNGC 2 cut(s) 32, 35
GlaI GCGC 1 cut(s) 285
GluI GCNGC 2 cut(s) 32, 35
GsaI CCCAGC 1 cut(s) 415
GsuI CTGGAG 1 cut(s) 25
HaeIII GGCC 3 cut(s) 31, 202, 365
HapII CCGG 2 cut(s) 598, 739
HhaI GCGC 1 cut(s) 286
Hin1II CATG 2 cut(s) 473, 731
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 3 cut(s) 45, 118, 466
HpaII CCGG 2 cut(s) 598, 739
HphI GGTGA 2 cut(s) 205, 561
Hpy166II GTNNAC 2 cut(s) 244, 379
Hpy188I TCNGA 2 cut(s) 27, 352
Hpy188III TCNNGA 4 cut(s) 42, 394, 590, 695
Hpy8I GTNNAC 2 cut(s) 244, 379
Hpy99I CGWCG 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 595
HpyCH4IV ACGT 3 cut(s) 211, 246, 424
HpyCH4V TGCA 3 cut(s) 37, 500, 731
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 4 cut(s) 26, 104, 638, 744
HpySE526I ACGT 3 cut(s) 211, 246, 424
Hsp92II CATG 2 cut(s) 473, 731
HspAI GCGC 1 cut(s) 284
Kzo9I GATC 2 cut(s) 20, 165
LmnI GCTCC 2 cut(s) 540, 714
Lsp1109I GCAGC 1 cut(s) 21
MaeII ACGT 3 cut(s) 211, 246, 424
MaeIII GTNAC 2 cut(s) 442, 473
MalI GATC 2 cut(s) 22, 167
MboI GATC 2 cut(s) 20, 165
MflI RGATCY 1 cut(s) 20
MluCI AATT 9 cut(s) 219, 304, 332, 432, 484, 492, 528, 575, 722
MlyI GAGTC 1 cut(s) 54
MseI TTAA 2 cut(s) 218, 579
MslI CAYNNNNRTG 2 cut(s) 87, 126
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 2 cut(s) 598, 739
MspR9I CCNGG 3 cut(s) 155, 204, 509
MvaI CCWGG 3 cut(s) 155, 204, 509
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeII GATC 2 cut(s) 20, 165
NlaIII CATG 2 cut(s) 473, 731
NlaIV GGNNCC 2 cut(s) 144, 354
NmuCI GTSAC 1 cut(s) 442
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 2 cut(s) 118, 466
PkrI GCNGC 2 cut(s) 33, 36
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
Psp6I CCWGG 3 cut(s) 153, 202, 507
PspFI CCCAGC 1 cut(s) 411
PspGI CCWGG 3 cut(s) 153, 202, 507
PspN4I GGNNCC 2 cut(s) 144, 354
PspPI GGNCC 2 cut(s) 352, 595
PsrI GAACNNNNNNTAC 2 cut(s) 409, 441
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 2 cut(s) 418, 462
RsaNI GTAC 2 cut(s) 417, 461
RseI CAYNNNNRTG 2 cut(s) 87, 126
SaqAI TTAA 2 cut(s) 218, 579
SatI GCNGC 2 cut(s) 32, 35
Sau3AI GATC 2 cut(s) 20, 165
Sau96I GGNCC 2 cut(s) 352, 595
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 3 cut(s) 155, 204, 509
SinI GGWCC 2 cut(s) 352, 595
SmiMI CAYNNNNRTG 2 cut(s) 87, 126
SmlI CTYRAG 2 cut(s) 256, 590
SmoI CTYRAG 2 cut(s) 256, 590
Sse9I AATT 9 cut(s) 219, 304, 332, 432, 484, 492, 528, 575, 722
SsiI CCGC 4 cut(s) 32, 158, 282, 329
StyD4I CCNGG 3 cut(s) 153, 202, 507
StyI CCWWGG 1 cut(s) 189
TaiI ACGT 3 cut(s) 214, 249, 427
TaqI TCGA 2 cut(s) 168, 393
TasI AATT 9 cut(s) 219, 304, 332, 432, 484, 492, 528, 575, 722
TatI WGTACW 1 cut(s) 460
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 2 cut(s) 118, 466
Tru1I TTAA 2 cut(s) 218, 579
Tru9I TTAA 2 cut(s) 218, 579
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 3 cut(s) 110, 263, 470
TspGWI ACGGA 1 cut(s) 701
VpaK11BI GGWCC 2 cut(s) 352, 595
XapI RAATTY 2 cut(s) 332, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.