Rw1G009020

SPFH domain / Band 7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0017776
Physical Location & Seq
Reverse (-)
19785841 .. 19787641
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009020.1

Sequence Viewer

Length: 753 bp
ATGAGTTTGCCTAAGCTTGCGTTGAGATCTCTGAGGCCGCTGCACTCCAGAGTTCTCGCTCGCAGTCGTTTTGTCCCCTCACACGACCACGGCTATGATGTCATCAACCTCAGTCCTCCCCCGATTCATTGGAGTGGTGGGTTTCTGGTGCCTAATACCCAGGCGGTTGTGATCGAGCGATTTGGAAAGTACCCCAAGGTGAAGTGGCCTGGAATACGTCGCTTAATTCCATTTGTTGATAAAATCGTAAACGTGGTTTCCTTGAGAGAAAAGACTATTCATATTCCTGCGCAGAACGCTACGACCAGCAACTCTATTCCCCTTTCGGTTTCTGCGGAATTTACAATGAGGATTTCGGACCCTGTGCTGGCCTCTTATGAGGTTGACAATCCCGTGGTCGAGACTATTGCTCTTGCCCAGCGTACCCTACGTTCTGTAATTGGGCAATTCACTTTCGAGCACATAGTACAGAATCATGGTTACTTTCATAATTGTCTAATTTTTGCACTCATCGACGGGGCAGGGAGATGGGGAATTGCCTGTCGGTGCTTTGAGATAAATGACATAGCTGTTTCACCTGAATTTAAAAAAGCTCTTGAGGACCGGAAGGCAGAGAAACAAAAGAGAGGATTGGCAGAGGTTCTTAGCATTTCGTCTAATGCCCTGACAAGAGCTTATGGGTTAGAGGGTAAAGCTATTCCAGACACCTGTTTGCTCCGTGCTTCTCAATTCCATGCACCAAACCGGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

250

Amino Acids

27.9

Weight (kDa)

9.69

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 50 - 211 2.2e-22 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017776)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330681
rosa_laevigata RLG00000030091
rosa_multiflora Rmu_sc0002725.1_g000003 Rmu_sc0004401.1_g000006
rosa_roxburghii Rroxscaffold_3G00227450 Rroxscaffold_4G00319780
rosa_rugosa Rorug01G0090400
rosa_samantha Rh1AG110100 Rh1AG110900 Rh1CG104800 Rh1DG114000
rosa_wichuraiana Rw1G009020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 148
AciI CCGC 3 cut(s) 38, 164, 335
AcsI RAATTY 2 cut(s) 338, 581
AfaI GTAC 3 cut(s) 191, 424, 468
AfiI CCNNNNNNNGG 1 cut(s) 367
AjnI CCWGG 2 cut(s) 159, 208
AluBI AGCT 5 cut(s) 16, 569, 593, 674, 695
AluI AGCT 5 cut(s) 16, 569, 593, 674, 695
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 1 cut(s) 395
AoxI GGCC 3 cut(s) 35, 206, 369
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 2 cut(s) 338, 581
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 358, 601
AsuHPI GGTGA 2 cut(s) 211, 567
AvaII GGWCC 2 cut(s) 358, 601
BanI GGYRCC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 522
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 2 cut(s) 161, 210
BcoDI GTCTC 1 cut(s) 395
BglII AGATCT 1 cut(s) 26
BisI GCNGC 2 cut(s) 38, 41
BlsI GCNGC 2 cut(s) 39, 42
Bme1390I CCNGG 2 cut(s) 161, 210
Bme18I GGWCC 2 cut(s) 358, 601
BmgT120I GGNCC 2 cut(s) 358, 601
BmiI GGNNCC 2 cut(s) 150, 360
BmrFI CCNGG 2 cut(s) 161, 210
BpmI CTGGAG 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 12
BpuEI CTTGAG 2 cut(s) 283, 617
BsaJI CCNNGG 4 cut(s) 88, 159, 195, 393
BsaWI WCCGGW 2 cut(s) 603, 744
Bsc4I CCNNNNNNNGG 1 cut(s) 367
BseBI CCWGG 2 cut(s) 161, 210
BseDI CCNNGG 4 cut(s) 88, 159, 195, 393
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 2 cut(s) 23, 124
BseXI GCAGC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 417
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 3 cut(s) 37, 208, 371
BshNI GGYRCC 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 462
BsiSI CCGG 2 cut(s) 604, 745
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 3 cut(s) 37, 208, 371
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 2 cut(s) 26, 171
BspACI CCGC 3 cut(s) 38, 164, 335
BspANI GGCC 3 cut(s) 37, 208, 371
BspCNI CTCAG 2 cut(s) 24, 123
BspLI GGNNCC 2 cut(s) 150, 360
BspT107I GGYRCC 1 cut(s) 148
BssECI CCNNGG 4 cut(s) 88, 159, 195, 393
BssMI GATC 2 cut(s) 26, 171
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 161, 210
BstC8I GCNNGC 3 cut(s) 18, 61, 369
BstDEI CTNAG 5 cut(s) 12, 32, 110, 644, 750
BstDSI CCRYGG 2 cut(s) 88, 393
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 2 cut(s) 29, 174
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 2 cut(s) 26, 171
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 2 cut(s) 161, 210
BstSCI CCNGG 2 cut(s) 159, 208
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BsuRI GGCC 3 cut(s) 37, 208, 371
BtgI CCRYGG 2 cut(s) 88, 393
Cac8I GCNNGC 3 cut(s) 18, 61, 369
CfoI GCGC 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 358, 601
Csp6I GTAC 3 cut(s) 190, 423, 467
CviAII CATG 2 cut(s) 476, 734
CviJI RGCY 9 cut(s) 16, 37, 93, 208, 371, 569, 593, 674, 695
CviKI_1 RGCY 9 cut(s) 16, 37, 93, 208, 371, 569, 593, 674, 695
CviQI GTAC 3 cut(s) 190, 423, 467
DdeI CTNAG 5 cut(s) 12, 32, 110, 644, 750
DpnI GATC 2 cut(s) 28, 173
DpnII GATC 2 cut(s) 26, 171
DraI TTTAAA 1 cut(s) 586
Eco130I CCWWGG 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 358, 601
EcoRII CCWGG 2 cut(s) 159, 208
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 479, 737
FaiI YATR 9 cut(s) 96, 282, 378, 464, 477, 489, 566, 678, 735
FaqI GGGAC 1 cut(s) 59
FatI CATG 2 cut(s) 475, 733
Fnu4HI GCNGC 2 cut(s) 38, 41
Fsp4HI GCNGC 2 cut(s) 38, 41
FspI TGCGCA 1 cut(s) 291
GlaI GCGC 1 cut(s) 291
GluI GCNGC 2 cut(s) 38, 41
GsaI CCCAGC 1 cut(s) 421
GsuI CTGGAG 1 cut(s) 31
HaeIII GGCC 3 cut(s) 37, 208, 371
HapII CCGG 2 cut(s) 604, 745
HhaI GCGC 1 cut(s) 292
Hin1II CATG 2 cut(s) 479, 737
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 124, 472
HpaII CCGG 2 cut(s) 604, 745
HphI GGTGA 2 cut(s) 211, 567
Hpy166II GTNNAC 2 cut(s) 250, 385
Hpy188I TCNGA 2 cut(s) 33, 358
Hpy188III TCNNGA 4 cut(s) 48, 400, 596, 701
Hpy8I GTNNAC 2 cut(s) 250, 385
Hpy99I CGWCG 2 cut(s) 222, 518
HpyAV CCTTC 1 cut(s) 601
HpyCH4IV ACGT 3 cut(s) 217, 252, 430
HpyCH4V TGCA 3 cut(s) 43, 506, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 5 cut(s) 12, 32, 110, 644, 750
HpySE526I ACGT 3 cut(s) 217, 252, 430
Hsp92II CATG 2 cut(s) 479, 737
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 2 cut(s) 26, 171
LmnI GCTCC 1 cut(s) 720
Lsp1109I GCAGC 1 cut(s) 27
MaeII ACGT 3 cut(s) 217, 252, 430
MaeIII GTNAC 1 cut(s) 479
MalI GATC 2 cut(s) 28, 173
MboI GATC 2 cut(s) 26, 171
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 9 cut(s) 225, 338, 438, 446, 490, 498, 534, 581, 728
MseI TTAA 2 cut(s) 224, 585
MslI CAYNNNNRTG 2 cut(s) 93, 132
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 2 cut(s) 604, 745
MspR9I CCNGG 2 cut(s) 161, 210
MvaI CCWGG 2 cut(s) 161, 210
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 2 cut(s) 26, 171
NlaIII CATG 2 cut(s) 479, 737
NlaIV GGNNCC 2 cut(s) 150, 360
NsbI TGCGCA 1 cut(s) 291
PfeI GAWTC 2 cut(s) 124, 472
PkrI GCNGC 2 cut(s) 39, 42
Psp6I CCWGG 2 cut(s) 159, 208
PspFI CCCAGC 1 cut(s) 417
PspGI CCWGG 2 cut(s) 159, 208
PspN4I GGNNCC 2 cut(s) 150, 360
PspPI GGNCC 2 cut(s) 358, 601
PsrI GAACNNNNNNTAC 2 cut(s) 415, 447
PsuI RGATCY 1 cut(s) 26
RsaI GTAC 3 cut(s) 191, 424, 468
RsaNI GTAC 3 cut(s) 190, 423, 467
RseI CAYNNNNRTG 2 cut(s) 93, 132
SaqAI TTAA 2 cut(s) 224, 585
SatI GCNGC 2 cut(s) 38, 41
Sau3AI GATC 2 cut(s) 26, 171
Sau96I GGNCC 2 cut(s) 358, 601
ScrFI CCNGG 2 cut(s) 161, 210
SduI GDGCHC 1 cut(s) 462
SinI GGWCC 2 cut(s) 358, 601
SmiMI CAYNNNNRTG 2 cut(s) 93, 132
SmlI CTYRAG 2 cut(s) 262, 596
SmoI CTYRAG 2 cut(s) 262, 596
Sse9I AATT 9 cut(s) 225, 338, 438, 446, 490, 498, 534, 581, 728
SsiI CCGC 3 cut(s) 38, 164, 335
StyD4I CCNGG 2 cut(s) 159, 208
StyI CCWWGG 1 cut(s) 195
TaiI ACGT 3 cut(s) 220, 255, 433
TaqI TCGA 4 cut(s) 174, 399, 456, 513
TasI AATT 9 cut(s) 225, 338, 438, 446, 490, 498, 534, 581, 728
TatI WGTACW 1 cut(s) 466
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 2 cut(s) 124, 472
Tru1I TTAA 2 cut(s) 224, 585
Tru9I TTAA 2 cut(s) 224, 585
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 3 cut(s) 116, 269, 476
TspGWI ACGGA 1 cut(s) 707
VpaK11BI GGWCC 2 cut(s) 358, 601
XapI RAATTY 2 cut(s) 338, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.