RLG00000030091

Stomatin-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017776
Physical Location & Seq
Reverse (-)
54996663 .. 54998450
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030091

Sequence Viewer

Length: 639 bp
ATGAGTTTGCCTAAGCTTGCGTTGAGATCTCTGAGGCCGCTGCACTCCAGAGTCCTCGCTCGCAGTCGTTTTGTCCCCTCACACCACCACGGCGATGATGTCATCAACCTCAGTCCTCCCTCGATTCATTGGAGTGGTGGGTTTCTGGTGCCTAATACCCAGGCGGTTGTGATCGAGCGATTTGGAAAGTACCCCAAGGTGATGTGGCCTGGAATACGTCGCTTAATTCCATTTGTTGATAAAATCGTAAACGTGAACGCTACGACCAGCAATTCTATTCCCGTTTTGGTTTCTGCGGAATTTACAATGATGATTTCGGACCCTGTGCTGGCCTCTTATGAGGTTGACAATCCCGTGGTCGAGACTACTGCTCTTGCCCAGCGTACCTTTGCACTCATCCACGGGGCAGGGAGATGGGGAATTGCCTGTCGGAGCTTTGAGATAAATGACATAGCTGTTTCACCTGAATTTAAAAAAGCTCTTGAGGACCGGAAGGCAGAGAAACAAAAGAGAGGATTGGCAGAGGTTCTTAGCATTTCGTCTAATGCCCTGACAAGAGCTTATGGGTTAGAGGGTAAAGCTATTACAGACACCTATTTGCTCCGTGCTTCTCAATTCCATGCACCAAACCGGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

213

Amino Acids

23.48

Weight (kDa)

9.88

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017776)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330681
rosa_laevigata RLG00000030091
rosa_multiflora Rmu_sc0002725.1_g000003 Rmu_sc0004401.1_g000006
rosa_roxburghii Rroxscaffold_3G00227450 Rroxscaffold_4G00319780
rosa_rugosa Rorug01G0090400
rosa_samantha Rh1AG110100 Rh1AG110900 Rh1CG104800 Rh1DG114000
rosa_wichuraiana Rw1G009020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 148
AciI CCGC 3 cut(s) 38, 164, 296
AcsI RAATTY 2 cut(s) 299, 467
AfaI GTAC 2 cut(s) 191, 385
AfiI CCNNNNNNNGG 1 cut(s) 328
AjnI CCWGG 2 cut(s) 159, 208
AluBI AGCT 6 cut(s) 16, 435, 455, 479, 560, 581
AluI AGCT 6 cut(s) 16, 435, 455, 479, 560, 581
Alw26I GTCTC 1 cut(s) 356
AoxI GGCC 3 cut(s) 35, 206, 330
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 2 cut(s) 299, 467
AspS9I GGNCC 2 cut(s) 319, 487
AsuHPI GGTGA 2 cut(s) 211, 453
AvaII GGWCC 2 cut(s) 319, 487
BanI GGYRCC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 408
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 350, 384
BciT130I CCWGG 2 cut(s) 161, 210
BcoDI GTCTC 1 cut(s) 356
BglII AGATCT 1 cut(s) 26
BisI GCNGC 2 cut(s) 38, 41
BlsI GCNGC 2 cut(s) 39, 42
Bme1390I CCNGG 2 cut(s) 161, 210
Bme18I GGWCC 2 cut(s) 319, 487
BmgT120I GGNCC 2 cut(s) 319, 487
BmiI GGNNCC 2 cut(s) 150, 321
BmrFI CCNGG 2 cut(s) 161, 210
BpmI CTGGAG 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 503
BsaJI CCNNGG 5 cut(s) 88, 159, 195, 354, 400
BsaWI WCCGGW 2 cut(s) 489, 630
Bsc4I CCNNNNNNNGG 1 cut(s) 328
BseBI CCWGG 2 cut(s) 161, 210
BseDI CCNNGG 5 cut(s) 88, 159, 195, 354, 400
BseGI GGATG 1 cut(s) 396
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMII CTCAG 2 cut(s) 23, 124
BseXI GCAGC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 3 cut(s) 37, 208, 332
BshNI GGYRCC 1 cut(s) 148
BsiSI CCGG 2 cut(s) 490, 631
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 3 cut(s) 37, 208, 332
Bsp143I GATC 2 cut(s) 26, 171
BspACI CCGC 3 cut(s) 38, 164, 296
BspANI GGCC 3 cut(s) 37, 208, 332
BspCNI CTCAG 2 cut(s) 24, 123
BspLI GGNNCC 2 cut(s) 150, 321
BspT107I GGYRCC 1 cut(s) 148
BssECI CCNNGG 5 cut(s) 88, 159, 195, 354, 400
BssMI GATC 2 cut(s) 26, 171
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 161, 210
BstC8I GCNNGC 3 cut(s) 18, 61, 330
BstDEI CTNAG 5 cut(s) 12, 32, 110, 530, 636
BstDSI CCRYGG 3 cut(s) 88, 354, 400
BstF5I GGATG 1 cut(s) 396
BstKTI GATC 2 cut(s) 29, 174
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 2 cut(s) 26, 171
BstNI CCWGG 2 cut(s) 161, 210
BstSCI CCNGG 2 cut(s) 159, 208
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BsuRI GGCC 3 cut(s) 37, 208, 332
BtgI CCRYGG 3 cut(s) 88, 354, 400
BtgZI GCGATG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 396
Cac8I GCNNGC 3 cut(s) 18, 61, 330
Cfr13I GGNCC 2 cut(s) 319, 487
Csp6I GTAC 2 cut(s) 190, 384
CviAII CATG 1 cut(s) 620
CviJI RGCY 9 cut(s) 16, 37, 208, 332, 435, 455, 479, 560, 581
CviKI_1 RGCY 9 cut(s) 16, 37, 208, 332, 435, 455, 479, 560, 581
CviQI GTAC 2 cut(s) 190, 384
DdeI CTNAG 5 cut(s) 12, 32, 110, 530, 636
DpnI GATC 2 cut(s) 28, 173
DpnII GATC 2 cut(s) 26, 171
DraI TTTAAA 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 319, 487
EcoRII CCWGG 2 cut(s) 159, 208
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 623
FaiI YATR 4 cut(s) 339, 452, 564, 621
FaqI GGGAC 1 cut(s) 59
FatI CATG 1 cut(s) 619
Fnu4HI GCNGC 2 cut(s) 38, 41
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 2 cut(s) 38, 41
GluI GCNGC 2 cut(s) 38, 41
GsaI CCCAGC 1 cut(s) 382
GsuI CTGGAG 1 cut(s) 31
HaeIII GGCC 3 cut(s) 37, 208, 332
HapII CCGG 2 cut(s) 490, 631
Hin1II CATG 1 cut(s) 623
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 51, 124
HpaII CCGG 2 cut(s) 490, 631
HphI GGTGA 2 cut(s) 211, 453
Hpy166II GTNNAC 3 cut(s) 250, 256, 346
Hpy188I TCNGA 3 cut(s) 33, 319, 432
Hpy188III TCNNGA 3 cut(s) 48, 361, 482
Hpy8I GTNNAC 3 cut(s) 250, 256, 346
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 1 cut(s) 487
HpyCH4IV ACGT 2 cut(s) 217, 252
HpyCH4V TGCA 3 cut(s) 43, 392, 623
HpyF3I CTNAG 5 cut(s) 12, 32, 110, 530, 636
HpySE526I ACGT 2 cut(s) 217, 252
Hsp92II CATG 1 cut(s) 623
Kzo9I GATC 2 cut(s) 26, 171
LmnI GCTCC 2 cut(s) 432, 606
Lsp1109I GCAGC 1 cut(s) 27
MaeII ACGT 2 cut(s) 217, 252
MalI GATC 2 cut(s) 28, 173
MboI GATC 2 cut(s) 26, 171
MflI RGATCY 1 cut(s) 26
MluCI AATT 6 cut(s) 225, 271, 299, 420, 467, 614
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 410
MseI TTAA 2 cut(s) 224, 471
MslI CAYNNNNRTG 2 cut(s) 93, 132
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 2 cut(s) 490, 631
MspR9I CCNGG 2 cut(s) 161, 210
MvaI CCWGG 2 cut(s) 161, 210
NdeII GATC 2 cut(s) 26, 171
NlaIII CATG 1 cut(s) 623
NlaIV GGNNCC 2 cut(s) 150, 321
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 2 cut(s) 39, 42
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 159, 208
PspFI CCCAGC 1 cut(s) 378
PspGI CCWGG 2 cut(s) 159, 208
PspN4I GGNNCC 2 cut(s) 150, 321
PspPI GGNCC 2 cut(s) 319, 487
PsuI RGATCY 1 cut(s) 26
RsaI GTAC 2 cut(s) 191, 385
RsaNI GTAC 2 cut(s) 190, 384
RseI CAYNNNNRTG 2 cut(s) 93, 132
SaqAI TTAA 2 cut(s) 224, 471
SatI GCNGC 2 cut(s) 38, 41
Sau3AI GATC 2 cut(s) 26, 171
Sau96I GGNCC 2 cut(s) 319, 487
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 2 cut(s) 161, 210
SinI GGWCC 2 cut(s) 319, 487
SmiMI CAYNNNNRTG 2 cut(s) 93, 132
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 6 cut(s) 225, 271, 299, 420, 467, 614
SsiI CCGC 3 cut(s) 38, 164, 296
StyD4I CCNGG 2 cut(s) 159, 208
StyI CCWWGG 1 cut(s) 195
TaiI ACGT 2 cut(s) 220, 255
TaqI TCGA 3 cut(s) 122, 174, 360
TasI AATT 6 cut(s) 225, 271, 299, 420, 467, 614
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 2 cut(s) 224, 471
Tru9I TTAA 2 cut(s) 224, 471
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 319, 487
XapI RAATTY 2 cut(s) 299, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.