Rroxscaffold_4G00319780

SPFH domain / Band 7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017776
Physical Location & Seq
Reverse (-)
47944367 .. 47946676
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00319780.1

Sequence Viewer

Length: 753 bp
ATGAGTTTGCCTAAGCTTGCGTTGAGATCTCTGAGGCCGCTGCACTCCAGAGTCCTCGCTCGCAGTCGTTTTGTCCCCTCAAACCACCACGGCGATGATGTCGTCAACCTCAGTCCTCCCCCGATTCATTGGAGTGGTGGGTTTCTGGTGCCTAATACCCAGGCGGTTGTGATCGAGCGATTTGGAAAGTACCCCAAGGTGAAGTGGCCTGGAATACGTCGCTTAATTCCATTTGTTGATAAAATCGTAAACGTGGTTTCCTTGAGAGAAAAGACTATTCATATTCGTGCGCAGAACGCTACGACCAGCAATTCTATTCCCCTTTCGGTTTCTGCGGAATTTACAATGATGATTTCGGACCCTGTGCTGGCCTCTTATGAGGTTGACAATCCCGTGGTCGACACTATTGCTCTTGCCCAGCGTACCCTACGTTCTGTAATTGGGCAAGTCACTTTCGAGCACATAGTACAGAATCATGGTTACTTTCTTGATCGTCTAATTTTTGCACTCAGCGACGGGGCAGGGAGATGGGGAATTGCCTGTCGGAACTTTGACATAAATGACATAGCTGTTTCACCTGAATTTAAAAAAGCTCTTGAGGACCGGAAGGCAGAGAAACAAAAGAGAGGATTGGCAGAGGTTCTTAGCATTTCGTCTAATGCCCTGACAAGAGCTTATGGGTTAGAGGGTAAAGCTATTCCAGACACCTGTTTGCTCCGTGCTTCTCAATTCCATGCACCAAACCGGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

250

Amino Acids

27.81

Weight (kDa)

9.9

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 50 - 211 1.1e-22 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017776)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330681
rosa_laevigata RLG00000030091
rosa_multiflora Rmu_sc0002725.1_g000003 Rmu_sc0004401.1_g000006
rosa_roxburghii Rroxscaffold_3G00227450 Rroxscaffold_4G00319780
rosa_rugosa Rorug01G0090400
rosa_samantha Rh1AG110100 Rh1AG110900 Rh1CG104800 Rh1DG114000
rosa_wichuraiana Rw1G009020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 148
AccI GTMKAC 1 cut(s) 399
AciI CCGC 3 cut(s) 38, 164, 335
AcsI RAATTY 2 cut(s) 338, 581
AfaI GTAC 3 cut(s) 191, 424, 468
AfiI CCNNNNNNNGG 1 cut(s) 367
AjnI CCWGG 2 cut(s) 159, 208
AluBI AGCT 5 cut(s) 16, 569, 593, 674, 695
AluI AGCT 5 cut(s) 16, 569, 593, 674, 695
Alw21I GWGCWC 1 cut(s) 462
AoxI GGCC 3 cut(s) 35, 206, 369
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 2 cut(s) 338, 581
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 358, 601
AsuHPI GGTGA 2 cut(s) 211, 567
AvaII GGWCC 2 cut(s) 358, 601
BanI GGYRCC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 522
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 2 cut(s) 161, 210
BglII AGATCT 1 cut(s) 26
BisI GCNGC 2 cut(s) 38, 41
BlsI GCNGC 2 cut(s) 39, 42
Bme1390I CCNGG 2 cut(s) 161, 210
Bme18I GGWCC 2 cut(s) 358, 601
BmgT120I GGNCC 2 cut(s) 358, 601
BmiI GGNNCC 2 cut(s) 150, 360
BmrFI CCNGG 2 cut(s) 161, 210
BpmI CTGGAG 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 12
BpuEI CTTGAG 2 cut(s) 283, 617
BsaJI CCNNGG 4 cut(s) 88, 159, 195, 393
BsaWI WCCGGW 2 cut(s) 603, 744
Bsc4I CCNNNNNNNGG 1 cut(s) 367
BseBI CCWGG 2 cut(s) 161, 210
BseDI CCNNGG 4 cut(s) 88, 159, 195, 393
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 3 cut(s) 23, 124, 523
BseXI GCAGC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 417
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 3 cut(s) 37, 208, 371
BshNI GGYRCC 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 462
BsiSI CCGG 2 cut(s) 604, 745
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 3 cut(s) 37, 208, 371
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 3 cut(s) 26, 171, 490
BspACI CCGC 3 cut(s) 38, 164, 335
BspANI GGCC 3 cut(s) 37, 208, 371
BspCNI CTCAG 3 cut(s) 24, 123, 522
BspLI GGNNCC 2 cut(s) 150, 360
BspT107I GGYRCC 1 cut(s) 148
BssECI CCNNGG 4 cut(s) 88, 159, 195, 393
BssMI GATC 3 cut(s) 26, 171, 490
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 161, 210
BstC8I GCNNGC 3 cut(s) 18, 61, 369
BstDEI CTNAG 5 cut(s) 12, 32, 110, 509, 644
BstDSI CCRYGG 2 cut(s) 88, 393
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 3 cut(s) 29, 174, 493
BstMBI GATC 3 cut(s) 26, 171, 490
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 2 cut(s) 161, 210
BstSCI CCNGG 2 cut(s) 159, 208
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BsuRI GGCC 3 cut(s) 37, 208, 371
BtgI CCRYGG 2 cut(s) 88, 393
BtgZI GCGATG 1 cut(s) 108
Cac8I GCNNGC 3 cut(s) 18, 61, 369
CfoI GCGC 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 358, 601
Csp6I GTAC 3 cut(s) 190, 423, 467
CviAII CATG 2 cut(s) 476, 734
CviJI RGCY 8 cut(s) 16, 37, 208, 371, 569, 593, 674, 695
CviKI_1 RGCY 8 cut(s) 16, 37, 208, 371, 569, 593, 674, 695
CviQI GTAC 3 cut(s) 190, 423, 467
DdeI CTNAG 5 cut(s) 12, 32, 110, 509, 644
DpnI GATC 3 cut(s) 28, 173, 492
DpnII GATC 3 cut(s) 26, 171, 490
DraI TTTAAA 1 cut(s) 586
Eco130I CCWWGG 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 358, 601
EcoRII CCWGG 2 cut(s) 159, 208
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 479, 737
FaiI YATR 8 cut(s) 282, 378, 464, 477, 557, 566, 678, 735
FaqI GGGAC 1 cut(s) 59
FatI CATG 2 cut(s) 475, 733
FblI GTMKAC 1 cut(s) 399
Fnu4HI GCNGC 2 cut(s) 38, 41
Fsp4HI GCNGC 2 cut(s) 38, 41
FspI TGCGCA 1 cut(s) 291
GlaI GCGC 1 cut(s) 291
GluI GCNGC 2 cut(s) 38, 41
GsaI CCCAGC 1 cut(s) 421
GsuI CTGGAG 1 cut(s) 31
HaeIII GGCC 3 cut(s) 37, 208, 371
HapII CCGG 2 cut(s) 604, 745
HhaI GCGC 1 cut(s) 292
Hin1II CATG 2 cut(s) 479, 737
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HincII GTYRAC 3 cut(s) 106, 385, 400
HindII GTYRAC 3 cut(s) 106, 385, 400
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 3 cut(s) 51, 124, 472
HpaII CCGG 2 cut(s) 604, 745
HphI GGTGA 2 cut(s) 211, 567
Hpy166II GTNNAC 4 cut(s) 106, 250, 385, 400
Hpy188I TCNGA 3 cut(s) 33, 358, 546
Hpy188III TCNNGA 4 cut(s) 48, 488, 596, 701
Hpy8I GTNNAC 4 cut(s) 106, 250, 385, 400
Hpy99I CGWCG 2 cut(s) 222, 518
HpyAV CCTTC 1 cut(s) 601
HpyCH4IV ACGT 3 cut(s) 217, 252, 430
HpyCH4V TGCA 3 cut(s) 43, 506, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 5 cut(s) 12, 32, 110, 509, 644
HpySE526I ACGT 3 cut(s) 217, 252, 430
Hsp92II CATG 2 cut(s) 479, 737
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 3 cut(s) 26, 171, 490
LmnI GCTCC 1 cut(s) 720
Lsp1109I GCAGC 1 cut(s) 27
MaeII ACGT 3 cut(s) 217, 252, 430
MaeIII GTNAC 2 cut(s) 448, 479
MalI GATC 3 cut(s) 28, 173, 492
MboI GATC 3 cut(s) 26, 171, 490
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 8 cut(s) 225, 310, 338, 438, 498, 534, 581, 728
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 524
MseI TTAA 3 cut(s) 224, 585, 751
MslI CAYNNNNRTG 3 cut(s) 93, 132, 285
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 2 cut(s) 604, 745
MspR9I CCNGG 2 cut(s) 161, 210
MvaI CCWGG 2 cut(s) 161, 210
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 3 cut(s) 26, 171, 490
NlaIII CATG 2 cut(s) 479, 737
NlaIV GGNNCC 2 cut(s) 150, 360
NmuCI GTSAC 1 cut(s) 448
NsbI TGCGCA 1 cut(s) 291
PfeI GAWTC 2 cut(s) 124, 472
PkrI GCNGC 2 cut(s) 39, 42
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 159, 208
PspFI CCCAGC 1 cut(s) 417
PspGI CCWGG 2 cut(s) 159, 208
PspN4I GGNNCC 2 cut(s) 150, 360
PspPI GGNCC 2 cut(s) 358, 601
PsrI GAACNNNNNNTAC 2 cut(s) 415, 447
PsuI RGATCY 1 cut(s) 26
RsaI GTAC 3 cut(s) 191, 424, 468
RsaNI GTAC 3 cut(s) 190, 423, 467
RseI CAYNNNNRTG 3 cut(s) 93, 132, 285
SalI GTCGAC 1 cut(s) 398
SaqAI TTAA 3 cut(s) 224, 585, 751
SatI GCNGC 2 cut(s) 38, 41
Sau3AI GATC 3 cut(s) 26, 171, 490
Sau96I GGNCC 2 cut(s) 358, 601
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 2 cut(s) 161, 210
SduI GDGCHC 1 cut(s) 462
SinI GGWCC 2 cut(s) 358, 601
SmiMI CAYNNNNRTG 3 cut(s) 93, 132, 285
SmlI CTYRAG 2 cut(s) 262, 596
SmoI CTYRAG 2 cut(s) 262, 596
Sse9I AATT 8 cut(s) 225, 310, 338, 438, 498, 534, 581, 728
SsiI CCGC 3 cut(s) 38, 164, 335
StyD4I CCNGG 2 cut(s) 159, 208
StyI CCWWGG 1 cut(s) 195
TaiI ACGT 3 cut(s) 220, 255, 433
TaqI TCGA 3 cut(s) 174, 399, 456
TasI AATT 8 cut(s) 225, 310, 338, 438, 498, 534, 581, 728
TatI WGTACW 1 cut(s) 466
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 2 cut(s) 124, 472
Tru1I TTAA 3 cut(s) 224, 585, 751
Tru9I TTAA 3 cut(s) 224, 585, 751
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 116, 269
TspGWI ACGGA 1 cut(s) 707
VpaK11BI GGWCC 2 cut(s) 358, 601
XapI RAATTY 2 cut(s) 338, 581
XmiI GTMKAC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.