Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002725.1

Orthogroup ID

OG0017776

Physical Location & Seq

Genomic Coordinates Reverse (-)

20347 .. 23282

Gene Structure 2936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002725.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atgagtttgcctaagcttgcgttgagatctctgaggccgctgcactccagagttctcgctcgcagtcgttttgtcccctcacacgaccacggctatgatgtcatcaacctcagtcctcccccgattcattggagtggtgggtttctggtgcctaatacccaggcggttgtgatcgagcgatttggaaagtaccccaaggtgaagtggcctggaatacgtcgcttaattccatttgttgataaaatcgtaaacgtggtttccttgagagaaaagactattcatattcctgcgcagaacgctacgaccagcaactctattcccctttcgatttcggaccctgtgctggcctcttatgaggttgacaatcccgtggtcgagactattgctcttgcccagcgtaccctacgttctgtaattgggcaattcactttcgagcacatagtacagaatcatggttactttcataattgtctaatttttgcactcatcgacggggcagggagatggggaattgcctgtcggtgctttgagataaatgacatagctgtttcacctgaatttaaaaaagctcttgaggaccggaaggcagagaaacaaaagagaggattggcagaggttcttagcatttcgtctaatgccctgacaagagcttatgggttagagcacgaagccctaagcctgaaatccaaaattcgtagccttcaaatcccagaaaccaccgccgcccaccttgaagatctcaactccagaagttcagaaccggcgaccccacccccagaacctggaggcaaaccactgaaccggccaccgaaagtagcaaaagtccctctgcccggttcaaagccttcctcaccacttcctgcagccatactcgaccactattctgtggaaggaaacacatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

301

Amino Acids

33.09

Weight (kDa)

9.51

Isoelectric Point (pI)

56.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017776)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330681
rosa_laevigata	RLG00000030091
rosa_multiflora	Rmu_sc0002725.1_g000003 Rmu_sc0004401.1_g000006
rosa_roxburghii	Rroxscaffold_3G00227450 Rroxscaffold_4G00319780
rosa_rugosa	Rorug01G0090400
rosa_samantha	Rh1AG110100 Rh1AG110900 Rh1CG104800 Rh1DG114000
rosa_wichuraiana	Rw1G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	148
AccB7I	CCANNNNNTGG	1 cut(s)	782
AciI	CCGC	4 cut(s)	38, 164, 720, 723
AcoI	YGGCCR	1 cut(s)	803
AcsI	RAATTY	2 cut(s)	557, 690
AfaI	GTAC	3 cut(s)	191, 400, 444
AfiI	CCNNNNNNNGG	3 cut(s)	343, 782, 833
AgsI	TTSAA	3 cut(s)	704, 734, 840
AjnI	CCWGG	3 cut(s)	159, 208, 781
AluBI	AGCT	4 cut(s)	16, 545, 569, 650
AluI	AGCT	4 cut(s)	16, 545, 569, 650
Alw21I	GWGCWC	2 cut(s)	438, 666
Alw26I	GTCTC	1 cut(s)	371
AlwNI	CAGNNNCTG	1 cut(s)	782
AoxI	GGCC	4 cut(s)	35, 206, 345, 803
ApeKI	GCWGC	2 cut(s)	40, 863
ApoI	RAATTY	2 cut(s)	557, 690
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	2 cut(s)	334, 577
AsuC2I	CCSGG	1 cut(s)	834
AsuHPI	GGTGA	3 cut(s)	211, 543, 843
AvaII	GGWCC	2 cut(s)	334, 577
BanI	GGYRCC	1 cut(s)	148
Bbv12I	GWGCWC	2 cut(s)	438, 666
BbvI	GCAGC	2 cut(s)	27, 875
BccI	CCATC	1 cut(s)	498
BceAI	ACGGC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BciT130I	CCWGG	3 cut(s)	161, 210, 783
BcnI	CCSGG	1 cut(s)	834
BcoDI	GTCTC	1 cut(s)	371
BfmI	CTRYAG	1 cut(s)	861
BglII	AGATCT	2 cut(s)	26, 736
BisI	GCNGC	4 cut(s)	38, 41, 723, 864
BlsI	GCNGC	4 cut(s)	39, 42, 724, 865
Bme1390I	CCNGG	4 cut(s)	161, 210, 783, 834
Bme18I	GGWCC	2 cut(s)	334, 577
BmgT120I	GGNCC	2 cut(s)	334, 577
BmiI	GGNNCC	2 cut(s)	150, 336
BmrFI	CCNGG	4 cut(s)	161, 210, 783, 834
BpmI	CTGGAG	3 cut(s)	31, 730, 804
Bpu10I	CCTNAGC	2 cut(s)	12, 674
BpuEI	CTTGAG	2 cut(s)	283, 593
BpuMI	CCSGG	1 cut(s)	834
BsaJI	CCNNGG	4 cut(s)	88, 159, 195, 369
BsaWI	WCCGGW	1 cut(s)	579
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 782, 833
Bse118I	RCCGGY	2 cut(s)	760, 801
BseBI	CCWGG	3 cut(s)	161, 210, 783
BseDI	CCNNGG	4 cut(s)	88, 159, 195, 369
BseLI	CCNNNNNNNGG	3 cut(s)	343, 782, 833
BseMII	CTCAG	2 cut(s)	23, 124
BseXI	GCAGC	2 cut(s)	27, 875
BseYI	CCCAGC	1 cut(s)	393
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	37, 208, 347, 805
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	2 cut(s)	438, 666
BsiSI	CCGG	4 cut(s)	580, 761, 802, 834
BslFI	GGGAC	2 cut(s)	59, 809
BslI	CCNNNNNNNGG	3 cut(s)	343, 782, 833
BsmAI	GTCTC	1 cut(s)	371
BsmFI	GGGAC	2 cut(s)	59, 809
BsnI	GGCC	4 cut(s)	37, 208, 347, 805
Bsp1286I	GDGCHC	2 cut(s)	438, 666
Bsp143I	GATC	3 cut(s)	26, 171, 736
BspACI	CCGC	4 cut(s)	38, 164, 720, 723
BspANI	GGCC	4 cut(s)	37, 208, 347, 805
BspCNI	CTCAG	2 cut(s)	24, 123
BspLI	GGNNCC	2 cut(s)	150, 336
BspMAI	CTGCAG	1 cut(s)	865
BspT107I	GGYRCC	1 cut(s)	148
BsrFI	RCCGGY	2 cut(s)	760, 801
BssAI	RCCGGY	2 cut(s)	760, 801
BssECI	CCNNGG	4 cut(s)	88, 159, 195, 369
BssMI	GATC	3 cut(s)	26, 171, 736
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	3 cut(s)	161, 210, 783
BstC8I	GCNNGC	3 cut(s)	18, 61, 345
BstDEI	CTNAG	6 cut(s)	12, 32, 110, 620, 674, 903
BstDSI	CCRYGG	2 cut(s)	88, 369
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	3 cut(s)	29, 174, 739
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	3 cut(s)	26, 171, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	3 cut(s)	161, 210, 783
BstSCI	CCNGG	4 cut(s)	159, 208, 781, 832
BstSFI	CTRYAG	1 cut(s)	861
BstV1I	GCAGC	2 cut(s)	27, 875
BstX2I	RGATCY	2 cut(s)	26, 736
BstYI	RGATCY	2 cut(s)	26, 736
BsuRI	GGCC	4 cut(s)	37, 208, 347, 805
BtgI	CCRYGG	2 cut(s)	88, 369
BtsIMutI	CAGTG	1 cut(s)	794
Cac8I	GCNNGC	3 cut(s)	18, 61, 345
CaiI	CAGNNNCTG	1 cut(s)	782
CfoI	GCGC	1 cut(s)	292
Cfr10I	RCCGGY	2 cut(s)	760, 801
Cfr13I	GGNCC	2 cut(s)	334, 577
Csp6I	GTAC	3 cut(s)	190, 399, 443
CviAII	CATG	1 cut(s)	452
CviQI	GTAC	3 cut(s)	190, 399, 443
DdeI	CTNAG	6 cut(s)	12, 32, 110, 620, 674, 903
DpnI	GATC	3 cut(s)	28, 173, 738
DpnII	GATC	3 cut(s)	26, 171, 736
DraI	TTTAAA	1 cut(s)	562
EaeI	YGGCCR	1 cut(s)	803
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	334, 577
EcoRII	CCWGG	3 cut(s)	159, 208, 781
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	455
FaiI	YATR	9 cut(s)	96, 282, 354, 440, 453, 465, 542, 654, 869
FaqI	GGGAC	2 cut(s)	59, 809
FatI	CATG	1 cut(s)	451
Fnu4HI	GCNGC	4 cut(s)	38, 41, 723, 864
Fsp4HI	GCNGC	4 cut(s)	38, 41, 723, 864
FspI	TGCGCA	1 cut(s)	291
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	4 cut(s)	38, 41, 723, 864
GsaI	CCCAGC	1 cut(s)	397
GsuI	CTGGAG	3 cut(s)	31, 730, 804
HaeIII	GGCC	4 cut(s)	37, 208, 347, 805
HapII	CCGG	4 cut(s)	580, 761, 802, 834
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	1 cut(s)	455
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	2 cut(s)	124, 448
HpaII	CCGG	4 cut(s)	580, 761, 802, 834
HphI	GGTGA	3 cut(s)	211, 543, 843
Hpy166II	GTNNAC	2 cut(s)	250, 361
Hpy188I	TCNGA	3 cut(s)	33, 334, 757
Hpy188III	TCNNGA	4 cut(s)	48, 376, 572, 747
Hpy8I	GTNNAC	2 cut(s)	250, 361
Hpy99I	CGWCG	2 cut(s)	222, 494
HpyAV	CCTTC	4 cut(s)	577, 710, 855, 884
HpyCH4IV	ACGT	3 cut(s)	217, 252, 406
HpyCH4V	TGCA	3 cut(s)	43, 482, 863
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	6 cut(s)	12, 32, 110, 620, 674, 903
HpySE526I	ACGT	3 cut(s)	217, 252, 406
Hsp92II	CATG	1 cut(s)	455
HspAI	GCGC	1 cut(s)	290
Kzo9I	GATC	3 cut(s)	26, 171, 736
Lsp1109I	GCAGC	2 cut(s)	27, 875
MaeII	ACGT	3 cut(s)	217, 252, 406
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	3 cut(s)	28, 173, 738
MboI	GATC	3 cut(s)	26, 171, 736
MboII	GAAGA	1 cut(s)	746
MflI	RGATCY	2 cut(s)	26, 736
MhlI	GDGCHC	2 cut(s)	438, 666
MluCI	AATT	8 cut(s)	225, 414, 422, 466, 474, 510, 557, 690
MseI	TTAA	2 cut(s)	224, 561
MslI	CAYNNNNRTG	2 cut(s)	93, 132
MspA1I	CMGCKG	1 cut(s)	40
MspI	CCGG	4 cut(s)	580, 761, 802, 834
MspR9I	CCNGG	4 cut(s)	161, 210, 783, 834
MvaI	CCWGG	3 cut(s)	161, 210, 783
MwoI	GCNNNNNNNGC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	834
NdeII	GATC	3 cut(s)	26, 171, 736
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	2 cut(s)	150, 336
NsbI	TGCGCA	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	124, 448
PflMI	CCANNNNNTGG	1 cut(s)	782
PkrI	GCNGC	4 cut(s)	39, 42, 724, 865
Psp6I	CCWGG	3 cut(s)	159, 208, 781
PspFI	CCCAGC	1 cut(s)	393
PspGI	CCWGG	3 cut(s)	159, 208, 781
PspN4I	GGNNCC	2 cut(s)	150, 336
PspPI	GGNCC	2 cut(s)	334, 577
PsrI	GAACNNNNNNTAC	2 cut(s)	391, 423
PstI	CTGCAG	1 cut(s)	865
PstNI	CAGNNNCTG	1 cut(s)	782
PsuI	RGATCY	2 cut(s)	26, 736
RsaI	GTAC	3 cut(s)	191, 400, 444
RsaNI	GTAC	3 cut(s)	190, 399, 443
RseI	CAYNNNNRTG	2 cut(s)	93, 132
SaqAI	TTAA	2 cut(s)	224, 561
SatI	GCNGC	4 cut(s)	38, 41, 723, 864
Sau3AI	GATC	3 cut(s)	26, 171, 736
Sau96I	GGNCC	2 cut(s)	334, 577
ScrFI	CCNGG	4 cut(s)	161, 210, 783, 834
SduI	GDGCHC	2 cut(s)	438, 666
SfcI	CTRYAG	1 cut(s)	861
SinI	GGWCC	2 cut(s)	334, 577
SmiMI	CAYNNNNRTG	2 cut(s)	93, 132
SmlI	CTYRAG	2 cut(s)	262, 572
SmoI	CTYRAG	2 cut(s)	262, 572
Sse9I	AATT	8 cut(s)	225, 414, 422, 466, 474, 510, 557, 690
SsiI	CCGC	4 cut(s)	38, 164, 720, 723
StyD4I	CCNGG	4 cut(s)	159, 208, 781, 832
StyI	CCWWGG	1 cut(s)	195
TaiI	ACGT	3 cut(s)	220, 255, 409
TaqI	TCGA	6 cut(s)	174, 326, 375, 432, 489, 873
TasI	AATT	8 cut(s)	225, 414, 422, 466, 474, 510, 557, 690
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	2 cut(s)	40, 725
TfiI	GAWTC	2 cut(s)	124, 448
Tru1I	TTAA	2 cut(s)	224, 561
Tru9I	TTAA	2 cut(s)	224, 561
TscAI	CASTG	1 cut(s)	801
TseI	GCWGC	2 cut(s)	40, 863
TspDTI	ATGAA	3 cut(s)	116, 269, 452
TspRI	CASTG	1 cut(s)	801
Van91I	CCANNNNNTGG	1 cut(s)	782
VpaK11BI	GGWCC	2 cut(s)	334, 577
XapI	RAATTY	2 cut(s)	557, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.