Rmu_sc0004401.1_g000006

SPFH domain / Band 7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004401.1
OG0017776
Physical Location & Seq
Reverse (-)
26093 .. 27866
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004401.1_g000006.1.cds

Sequence Viewer

Length: 729 bp
atgagtttgcctaagcttgcgttgagatctctgaggccgctgcactccagagtcctcgctcgcagtcgttttgtcccctcacacaaccacggcgatgatgtcatgaacctcagtcctcccccgattcattggagtggtgggtttctggtgcctaatacccaggcggttgtgatcgagcgatttggaaagtaccccaaggtgaagtggcctggaatacgtcgcttaattccatttgttgataaagtcgtaaacgtggtttccttgagagaaaagactattcatattcctgcgcagaacgctacgaccagcaattctattcccctttcgatttcggaccctgtgctggcctcttatgaggttgacaatcccgtggtcgagactattgctcttgcccagcgtaccctacgttctgtaattgggcaactcactttcgagcacatagtacggaatcatgcttcctttcgtcattgtctaatgtttgcactcatcgagggggcagggagatggggaattgcctgtcggagctttgacataaatgacatagctgtttcacctgaatttaaaaaagctcttgaggaccggaaggcagagaaacaaaagagaggattggcagaggttcttagcatttcgtctaatgccctgacaagagcttatgggttagagggtaaagctattccagacacctgtttgctcggtgcttctcaattccatgcaccaaaccggacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

242

Amino Acids

26.81

Weight (kDa)

9.96

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017776)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330681
rosa_laevigata RLG00000030091
rosa_multiflora Rmu_sc0002725.1_g000003 Rmu_sc0004401.1_g000006
rosa_roxburghii Rroxscaffold_3G00227450 Rroxscaffold_4G00319780
rosa_rugosa Rorug01G0090400
rosa_samantha Rh1AG110100 Rh1AG110900 Rh1CG104800 Rh1DG114000
rosa_wichuraiana Rw1G009020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 148
AciI CCGC 2 cut(s) 38, 164
AcsI RAATTY 1 cut(s) 557
AfaI GTAC 3 cut(s) 191, 400, 444
AfiI CCNNNNNNNGG 1 cut(s) 343
AjnI CCWGG 2 cut(s) 159, 208
AluBI AGCT 6 cut(s) 16, 525, 545, 569, 650, 671
AluI AGCT 6 cut(s) 16, 525, 545, 569, 650, 671
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 371
AoxI GGCC 3 cut(s) 35, 206, 345
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 557
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 334, 577
AsuHPI GGTGA 2 cut(s) 211, 543
AvaII GGWCC 2 cut(s) 334, 577
BanI GGYRCC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 498
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BciT130I CCWGG 2 cut(s) 161, 210
BcoDI GTCTC 1 cut(s) 371
BglII AGATCT 1 cut(s) 26
BisI GCNGC 2 cut(s) 38, 41
BlsI GCNGC 2 cut(s) 39, 42
Bme1390I CCNGG 2 cut(s) 161, 210
Bme18I GGWCC 2 cut(s) 334, 577
BmgT120I GGNCC 2 cut(s) 334, 577
BmiI GGNNCC 2 cut(s) 150, 336
BmrFI CCNGG 2 cut(s) 161, 210
BpmI CTGGAG 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 12
BpuEI CTTGAG 2 cut(s) 283, 593
BsaJI CCNNGG 4 cut(s) 88, 159, 195, 369
BsaWI WCCGGW 2 cut(s) 579, 720
Bsc4I CCNNNNNNNGG 1 cut(s) 343
BseBI CCWGG 2 cut(s) 161, 210
BseDI CCNNGG 4 cut(s) 88, 159, 195, 369
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 23, 124
BseXI GCAGC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 393
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 3 cut(s) 37, 208, 347
BshNI GGYRCC 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 438
BsiSI CCGG 2 cut(s) 580, 721
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 3 cut(s) 37, 208, 347
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 2 cut(s) 26, 171
BspACI CCGC 2 cut(s) 38, 164
BspANI GGCC 3 cut(s) 37, 208, 347
BspCNI CTCAG 2 cut(s) 24, 123
BspHI TCATGA 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 150, 336
BspT107I GGYRCC 1 cut(s) 148
BssECI CCNNGG 4 cut(s) 88, 159, 195, 369
BssMI GATC 2 cut(s) 26, 171
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 161, 210
BstC8I GCNNGC 3 cut(s) 18, 61, 345
BstDEI CTNAG 5 cut(s) 12, 32, 110, 620, 726
BstDSI CCRYGG 2 cut(s) 88, 369
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 2 cut(s) 29, 174
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 2 cut(s) 26, 171
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 2 cut(s) 161, 210
BstSCI CCNGG 2 cut(s) 159, 208
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BsuRI GGCC 3 cut(s) 37, 208, 347
BtgI CCRYGG 2 cut(s) 88, 369
BtgZI GCGATG 1 cut(s) 108
Cac8I GCNNGC 3 cut(s) 18, 61, 345
CciI TCATGA 1 cut(s) 102
CfoI GCGC 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 334, 577
Csp6I GTAC 3 cut(s) 190, 399, 443
CviAII CATG 3 cut(s) 103, 452, 710
CviJI RGCY 9 cut(s) 16, 37, 208, 347, 525, 545, 569, 650, 671
CviKI_1 RGCY 9 cut(s) 16, 37, 208, 347, 525, 545, 569, 650, 671
CviQI GTAC 3 cut(s) 190, 399, 443
DdeI CTNAG 5 cut(s) 12, 32, 110, 620, 726
DpnI GATC 2 cut(s) 28, 173
DpnII GATC 2 cut(s) 26, 171
DraI TTTAAA 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 334, 577
EcoRII CCWGG 2 cut(s) 159, 208
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 3 cut(s) 106, 455, 713
FaiI YATR 9 cut(s) 104, 282, 354, 440, 453, 533, 542, 654, 711
FaqI GGGAC 1 cut(s) 59
FatI CATG 3 cut(s) 102, 451, 709
Fnu4HI GCNGC 2 cut(s) 38, 41
Fsp4HI GCNGC 2 cut(s) 38, 41
FspI TGCGCA 1 cut(s) 291
GlaI GCGC 1 cut(s) 291
GluI GCNGC 2 cut(s) 38, 41
GsaI CCCAGC 1 cut(s) 397
GsuI CTGGAG 1 cut(s) 31
HaeIII GGCC 3 cut(s) 37, 208, 347
HapII CCGG 2 cut(s) 580, 721
HhaI GCGC 1 cut(s) 292
Hin1II CATG 3 cut(s) 106, 455, 713
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 3 cut(s) 51, 124, 448
HpaII CCGG 2 cut(s) 580, 721
HphI GGTGA 2 cut(s) 211, 543
Hpy166II GTNNAC 2 cut(s) 250, 361
Hpy188I TCNGA 3 cut(s) 33, 334, 522
Hpy188III TCNNGA 5 cut(s) 48, 103, 376, 572, 677
Hpy8I GTNNAC 2 cut(s) 250, 361
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 1 cut(s) 577
HpyCH4IV ACGT 3 cut(s) 217, 252, 406
HpyCH4V TGCA 3 cut(s) 43, 482, 713
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 5 cut(s) 12, 32, 110, 620, 726
HpySE526I ACGT 3 cut(s) 217, 252, 406
Hsp92II CATG 3 cut(s) 106, 455, 713
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 2 cut(s) 26, 171
LmnI GCTCC 1 cut(s) 522
Lsp1109I GCAGC 1 cut(s) 27
MaeII ACGT 3 cut(s) 217, 252, 406
MalI GATC 2 cut(s) 28, 173
MboI GATC 2 cut(s) 26, 171
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 6 cut(s) 225, 310, 414, 510, 557, 704
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 500
MseI TTAA 2 cut(s) 224, 561
MslI CAYNNNNRTG 2 cut(s) 93, 132
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 2 cut(s) 580, 721
MspR9I CCNGG 2 cut(s) 161, 210
MvaI CCWGG 2 cut(s) 161, 210
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 2 cut(s) 26, 171
NlaIII CATG 3 cut(s) 106, 455, 713
NlaIV GGNNCC 2 cut(s) 150, 336
NsbI TGCGCA 1 cut(s) 291
PagI TCATGA 1 cut(s) 102
PfeI GAWTC 2 cut(s) 124, 448
PkrI GCNGC 2 cut(s) 39, 42
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 159, 208
PspFI CCCAGC 1 cut(s) 393
PspGI CCWGG 2 cut(s) 159, 208
PspN4I GGNNCC 2 cut(s) 150, 336
PspPI GGNCC 2 cut(s) 334, 577
PsrI GAACNNNNNNTAC 2 cut(s) 391, 423
PsuI RGATCY 1 cut(s) 26
RsaI GTAC 3 cut(s) 191, 400, 444
RsaNI GTAC 3 cut(s) 190, 399, 443
RseI CAYNNNNRTG 2 cut(s) 93, 132
SaqAI TTAA 2 cut(s) 224, 561
SatI GCNGC 2 cut(s) 38, 41
Sau3AI GATC 2 cut(s) 26, 171
Sau96I GGNCC 2 cut(s) 334, 577
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 2 cut(s) 161, 210
SduI GDGCHC 1 cut(s) 438
SinI GGWCC 2 cut(s) 334, 577
SmiMI CAYNNNNRTG 2 cut(s) 93, 132
SmlI CTYRAG 2 cut(s) 262, 572
SmoI CTYRAG 2 cut(s) 262, 572
Sse9I AATT 6 cut(s) 225, 310, 414, 510, 557, 704
SsiI CCGC 2 cut(s) 38, 164
StyD4I CCNGG 2 cut(s) 159, 208
StyI CCWWGG 1 cut(s) 195
TaiI ACGT 3 cut(s) 220, 255, 409
TaqI TCGA 5 cut(s) 174, 326, 375, 432, 489
TasI AATT 6 cut(s) 225, 310, 414, 510, 557, 704
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 2 cut(s) 124, 448
Tru1I TTAA 2 cut(s) 224, 561
Tru9I TTAA 2 cut(s) 224, 561
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 3 cut(s) 116, 119, 269
TspGWI ACGGA 1 cut(s) 460
VpaK11BI GGWCC 2 cut(s) 334, 577
XapI RAATTY 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.