Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018551

Physical Location & Seq

Genomic Coordinates Forward (+)

48108554 .. 48109568

Gene Structure 1015 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58090

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGACAGCTTATGGTACAGGTCTCCTGGTCACCTATGTGGCTTTGAACGTGATGGATGGACATGGCCAACCTGCTTTGTTATACATAGTTCCATTCACACTTGGTACCTTTTTAACCTTGGGACAGATGAGAGGTGACCTCAAAGTTCTGTGGACAAGAGGAGAACCAGAGAGGCCTTGCCCGCACGTACGACTCCAATCCTCTCACTCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

71

Amino Acids

7.84

Weight (kDa)

7.98

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	1 - 55	4.3e-19	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018551)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0316531 RchiOBHm_Chr1g0355431 RchiOBHm_Chr1g0357631 RchiOBHm_Chr5g0055631 RchiOBHm_Chr5g0082601
rosa_multiflora	Rmu_co8371173.1_g000001 Rmu_sc0002037.1_g000004
rosa_roxburghii	Rroxscaffold_7G00183280
rosa_samantha	Rh1DG078000 Rh1DG257300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	79
Acc65I	GGTACC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	104
AciI	CCGC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	64
AfaI	GTAC	3 cut(s)	16, 106, 189
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	24
AleI	CACNNNNGTG	1 cut(s)	35
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	26
AoxI	GGCC	2 cut(s)	64, 173
Asp718I	GGTACC	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	22, 146
BalI	TGGCCA	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	104
BccI	CCATC	2 cut(s)	46, 50
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	26
BfuAI	ACCTGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	26
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
BsaAI	YACGTR	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	66, 175
BshNI	GGYRCC	1 cut(s)	104
BsiWI	CGTACG	1 cut(s)	187
BslFI	GGGAC	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	66, 175
Bso31I	GGTCTC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	2 cut(s)	66, 175
BspLI	GGNNCC	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	182
BstEII	GGTNACC	2 cut(s)	28, 134
BstF5I	GGATG	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	26
BstPI	GGTNACC	2 cut(s)	28, 134
BstSCI	CCNGG	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	66, 175
BtsCI	GGATG	1 cut(s)	61
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	182
Csp6I	GTAC	3 cut(s)	15, 105, 188
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	4 cut(s)	8, 41, 66, 175
CviKI_1	RGCY	4 cut(s)	8, 41, 66, 175
CviQI	GTAC	3 cut(s)	15, 105, 188
EaeI	YGGCCR	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	117
Eco147I	AGGCCT	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	26
Eco91I	GGTNACC	2 cut(s)	28, 134
EcoO65I	GGTNACC	2 cut(s)	28, 134
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	1 cut(s)	65
FaiI	YATR	5 cut(s)	12, 36, 63, 82, 86
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	1 cut(s)	61
FauI	CCCGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	66, 175
Hin1II	CATG	1 cut(s)	65
HinfI	GANTC	1 cut(s)	192
HphI	GGTGA	2 cut(s)	22, 146
Hpy166II	GTNNAC	1 cut(s)	153
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4IV	ACGT	2 cut(s)	48, 186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpySE526I	ACGT	2 cut(s)	48, 186
Hsp92II	CATG	1 cut(s)	65
KpnI	GGTACC	1 cut(s)	108
LpnPI	CCDG	5 cut(s)	3, 11, 38, 84, 180
MaeII	ACGT	2 cut(s)	48, 186
MaeIII	GTNAC	2 cut(s)	28, 134
MlsI	TGGCCA	1 cut(s)	66
MluNI	TGGCCA	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	5 cut(s)	125, 149, 152, 165, 211
Mox20I	TGGCCA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	2 cut(s)	28, 134
OliI	CACNNNNGTG	1 cut(s)	35
PceI	AGGCCT	1 cut(s)	175
Pfl23II	CGTACG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Ppu21I	YACGTR	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	24
PspEI	GGTNACC	2 cut(s)	28, 134
PspGI	CCWGG	1 cut(s)	24
PspLI	CGTACG	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	106
RsaI	GTAC	3 cut(s)	16, 106, 189
RsaNI	GTAC	3 cut(s)	15, 105, 188
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	113
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	35
SseBI	AGGCCT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	182
StuI	AGGCCT	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	117
TaiI	ACGT	2 cut(s)	51, 189
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TseFI	GTSAC	2 cut(s)	28, 134
Tsp45I	GTSAC	2 cut(s)	28, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.