Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002037.1

Orthogroup ID

OG0018551

Physical Location & Seq

Genomic Coordinates Reverse (-)

13820 .. 15148

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002037.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgtttgatccttggggtggctacagcatcatcgggtttggtgatattatcttacctggattggttgtagccttttcactaaggtatgattggttgacaaataagactcttcgaacgggttactttgtgtgggcaatgacagcttatggtgcaggtctcctggtcacctatgtggctttgaacttgatggatggacatggccaacctgctttgttatacatagttccattcacacttggtaccttcttaaccttgggacagatgagaggtgacctcaaagttctgtggacaagaggagaacctgagaggccttgcccgcacgtacgactccaatcctctcactctcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

116

Amino Acids

12.96

Weight (kDa)

7.92

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018551)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0316531 RchiOBHm_Chr1g0355431 RchiOBHm_Chr1g0357631 RchiOBHm_Chr5g0055631 RchiOBHm_Chr5g0082601
rosa_multiflora	Rmu_co8371173.1_g000001 Rmu_sc0002037.1_g000004
rosa_roxburghii	Rroxscaffold_7G00183280
rosa_samantha	Rh1DG078000 Rh1DG257300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	143, 214
Acc65I	GGTACC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	239
AciI	CCGC	1 cut(s)	317
AclWI	GGATC	1 cut(s)	2
AcoI	YGGCCR	1 cut(s)	199
AfaI	GTAC	2 cut(s)	241, 324
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	2 cut(s)	55, 159
AleI	CACNNNNGTG	1 cut(s)	170
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	2
AoxI	GGCC	2 cut(s)	199, 308
Asp718I	GGTACC	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	53, 157, 281
AsuII	TTCGAA	1 cut(s)	112
BalI	TGGCCA	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	239
BccI	CCATC	2 cut(s)	181, 185
BciT130I	CCWGG	2 cut(s)	57, 161
BcoDI	GTCTC	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	22
BfuAI	ACCTGC	2 cut(s)	143, 214
Bme1390I	CCNGG	2 cut(s)	57, 161
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	2 cut(s)	57, 161
BmsI	GCATC	1 cut(s)	36
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
Bpu14I	TTCGAA	1 cut(s)	112
BsaAI	YACGTR	1 cut(s)	322
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	11, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	57, 161
BseDI	CCNNGG	2 cut(s)	11, 252
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	201, 310
BshNI	GGYRCC	1 cut(s)	239
BsiWI	CGTACG	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	270
BsnI	GGCC	2 cut(s)	201, 310
Bso31I	GGTCTC	1 cut(s)	161
Bsp119I	TTCGAA	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	7
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	2 cut(s)	201, 310
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	241
BspMI	ACCTGC	2 cut(s)	143, 214
BspPI	GGATC	1 cut(s)	2
BspT104I	TTCGAA	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	11, 252
BssMI	GATC	1 cut(s)	7
BssT1I	CCWWGG	2 cut(s)	11, 252
Bst2UI	CCWGG	2 cut(s)	57, 161
Bst6I	CTCTTC	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	322
BstBI	TTCGAA	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	80, 303
BstEII	GGTNACC	2 cut(s)	163, 269
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 149, 316
BstNI	CCWGG	2 cut(s)	57, 161
BstPI	GGTNACC	2 cut(s)	163, 269
BstSCI	CCNGG	2 cut(s)	55, 159
BstSFI	CTRYAG	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	201, 310
BtsCI	GGATG	1 cut(s)	196
BveI	ACCTGC	2 cut(s)	143, 214
Cac8I	GCNNGC	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	240, 323
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	6 cut(s)	21, 71, 143, 176, 201, 310
CviKI_1	RGCY	6 cut(s)	21, 71, 143, 176, 201, 310
CviQI	GTAC	2 cut(s)	240, 323
DdeI	CTNAG	2 cut(s)	80, 303
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	11, 252
Eco147I	AGGCCT	1 cut(s)	310
Eco31I	GGTCTC	1 cut(s)	161
Eco91I	GGTNACC	2 cut(s)	163, 269
EcoO65I	GGTNACC	2 cut(s)	163, 269
EcoRII	CCWGG	2 cut(s)	55, 159
EcoT14I	CCWWGG	2 cut(s)	11, 252
ErhI	CCWWGG	2 cut(s)	11, 252
FaeI	CATG	1 cut(s)	200
FaiI	YATR	6 cut(s)	87, 147, 171, 198, 217, 221
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	1 cut(s)	196
FauI	CCCGC	1 cut(s)	324
FokI	GGATG	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	201, 310
Hin1II	CATG	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	2 cut(s)	106, 327
HphI	GGTGA	3 cut(s)	53, 157, 281
Hpy166II	GTNNAC	2 cut(s)	96, 288
Hpy8I	GTNNAC	2 cut(s)	96, 288
HpyAV	CCTTC	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 149, 316
HpyF3I	CTNAG	2 cut(s)	80, 303
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	200
KpnI	GGTACC	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	7
LpnPI	CCDG	7 cut(s)	42, 69, 138, 146, 173, 219, 315
LweI	GCATC	1 cut(s)	36
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	3 cut(s)	119, 163, 269
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	1 cut(s)	101
MlsI	TGGCCA	1 cut(s)	201
MluNI	TGGCCA	1 cut(s)	201
MlyI	GAGTC	2 cut(s)	100, 321
MnlI	CCTC	5 cut(s)	260, 284, 287, 300, 346
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	1 cut(s)	170
Msp20I	TGGCCA	1 cut(s)	201
MspR9I	CCNGG	2 cut(s)	57, 161
MvaI	CCWGG	2 cut(s)	57, 161
MwoI	GCNNNNNNNGC	3 cut(s)	140, 149, 316
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	241
NmuCI	GTSAC	2 cut(s)	163, 269
NspV	TTCGAA	1 cut(s)	112
OliI	CACNNNNGTG	1 cut(s)	170
PceI	AGGCCT	1 cut(s)	310
Pfl23II	CGTACG	1 cut(s)	322
PleI	GAGTC	2 cut(s)	100, 321
PpsI	GAGTC	2 cut(s)	100, 321
Ppu21I	YACGTR	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	55, 159
PspEI	GGTNACC	2 cut(s)	163, 269
PspGI	CCWGG	2 cut(s)	55, 159
PspLI	CGTACG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	241
RsaI	GTAC	2 cut(s)	241, 324
RsaNI	GTAC	2 cut(s)	240, 323
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	248
Sau3AI	GATC	1 cut(s)	7
SchI	GAGTC	2 cut(s)	100, 321
ScrFI	CCNGG	2 cut(s)	57, 161
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	22
SfuI	TTCGAA	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	170
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	1 cut(s)	317
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	55, 159
StyI	CCWWGG	2 cut(s)	11, 252
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TseFI	GTSAC	2 cut(s)	163, 269
Tsp45I	GTSAC	2 cut(s)	163, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.