Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8371173.1

Orthogroup ID

OG0018551

Physical Location & Seq

Genomic Coordinates Reverse (-)

254 .. 1075

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8371173.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgctactcaagatcccccgcatgtttgacccatggggtggttacagcataataggatttggtgacatcctgctaccaggcctgcttgttgcattctcactcaggtatgattggttggcaagcaagagtctgcgagctggttacttcttgtgggcaatgattgcttatggattaggtcttcttatcacatatgtggcattaaacttgatggatgggcatggccaaccagcactgctttacattgttccatttacactaggaaccttactgacattagggaagaagagaggtgacttaccgattctgtggggtagaggagagccggataggctctgcccgcatgttcgacttgaacacagtcgagaactgagggaagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

126

Amino Acids

14.23

Weight (kDa)

8.82

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018551)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0316531 RchiOBHm_Chr1g0355431 RchiOBHm_Chr1g0357631 RchiOBHm_Chr5g0055631 RchiOBHm_Chr5g0082601
rosa_multiflora	Rmu_co8371173.1_g000001 Rmu_sc0002037.1_g000004
rosa_roxburghii	Rroxscaffold_7G00183280
rosa_samantha	Rh1DG078000 Rh1DG257300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	38
AciI	CCGC	2 cut(s)	19, 338
AclWI	GGATC	1 cut(s)	7
AcoI	YGGCCR	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	76
AleI	CACNNNNGTG	1 cut(s)	191
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
AlwI	GGATC	1 cut(s)	7
AoxI	GGCC	2 cut(s)	79, 220
AsuHPI	GGTGA	2 cut(s)	74, 302
BalI	TGGCCA	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	170
BccI	CCATC	2 cut(s)	202, 206
BciT130I	CCWGG	1 cut(s)	78
BfaI	CTAG	1 cut(s)	257
BglI	GCCNNNNNGGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	2 cut(s)	66, 217
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	115, 359
BseRI	GAGGAG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	81, 222
BsiSI	CCGG	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	81, 222
Bsp143I	GATC	1 cut(s)	12
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	2 cut(s)	19, 338
BspANI	GGCC	2 cut(s)	81, 222
BspCNI	CTCAG	2 cut(s)	114, 360
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	4 cut(s)	83, 121, 135, 338
BstDEI	CTNAG	2 cut(s)	101, 368
BstDSI	CCRYGG	1 cut(s)	32
BstF5I	GGATG	2 cut(s)	66, 217
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 328, 337
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	2 cut(s)	25, 344
BstSCI	CCNGG	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	81, 222
BtgI	CCRYGG	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	66, 217
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	4 cut(s)	83, 121, 135, 338
CviAII	CATG	4 cut(s)	22, 33, 218, 341
CviJI	RGCY	5 cut(s)	81, 137, 222, 322, 331
CviKI_1	RGCY	5 cut(s)	81, 137, 222, 322, 331
DdeI	CTNAG	2 cut(s)	101, 368
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	32
Eco147I	AGGCCT	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	4 cut(s)	25, 36, 221, 344
FaiI	YATR	9 cut(s)	23, 34, 50, 108, 168, 190, 192, 219, 342
FatI	CATG	4 cut(s)	21, 32, 217, 340
FauI	CCCGC	2 cut(s)	26, 345
FauNDI	CATATG	1 cut(s)	190
FokI	GGATG	2 cut(s)	53, 224
FspBI	CTAG	1 cut(s)	257
HaeIII	GGCC	2 cut(s)	81, 222
HapII	CCGG	1 cut(s)	323
Hin1II	CATG	4 cut(s)	25, 36, 221, 344
HinfI	GANTC	2 cut(s)	127, 301
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	2 cut(s)	74, 302
Hpy188III	TCNNGA	2 cut(s)	10, 362
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 328, 337
HpyF3I	CTNAG	2 cut(s)	101, 368
Hsp92II	CATG	4 cut(s)	25, 36, 221, 344
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	8 cut(s)	63, 83, 88, 90, 95, 123, 240, 336
MaeI	CTAG	1 cut(s)	257
MaeIII	GTNAC	4 cut(s)	41, 62, 140, 290
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	3 cut(s)	170, 292, 295
MflI	RGATCY	1 cut(s)	12
MlsI	TGGCCA	1 cut(s)	222
MluNI	TGGCCA	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	3 cut(s)	281, 308, 363
Mox20I	TGGCCA	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	191
Msp20I	TGGCCA	1 cut(s)	222
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	161, 328, 337
NcoI	CCATGG	1 cut(s)	32
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	4 cut(s)	25, 36, 221, 344
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	2 cut(s)	62, 290
NspI	RCATGY	2 cut(s)	25, 344
OliI	CACNNNNGTG	1 cut(s)	191
PceI	AGGCCT	1 cut(s)	81
PctI	GAATGC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	38
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	5 cut(s)	107, 139, 178, 266, 292
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SseBI	AGGCCT	1 cut(s)	81
SsiI	CCGC	2 cut(s)	19, 338
SspMI	CTAG	1 cut(s)	257
StuI	AGGCCT	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	2 cut(s)	346, 361
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	62, 290
Tsp45I	GTSAC	2 cut(s)	62, 290
TspRI	CASTG	1 cut(s)	237
Van91I	CCANNNNNTGG	1 cut(s)	38
XceI	RCATGY	2 cut(s)	25, 344
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.