Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018551

Physical Location & Seq

Genomic Coordinates Forward (+)

47178382 .. 47201328

Gene Structure 22947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG257300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGATAGTGGTGGCTCGTGGTGATAAAAGTGGAGAGGATGGTATCCCAATGCTACTAAAAATCCCACGGATGTTTGATCCTTGGGGTGGCTACAGCTTCTTCGGGTTTGGTGATATTATCTTACCTGGATTGGTTGTAGCCTTTTCACTAAGGTATGATTGGTTGACAAATAAGACTCTTCGAATGGGTTACTTTGTGTGGGCAATGACAGCTTATGGTGCAGGTCTCCTGGTAACCTATGTGGCTTTGAACTTGATGGATGGACATGGCCAACCTGCTTTGTTATACATAGTTCCATTCACACTTGGTACCTTTTTAACCTTAGGACAGATGAGAGGTGACCTCAAAGTTCTGTGGACAAGAGGAGAACCAGAGATGCGTTGCCCGCACGTACGACTCCAATCCTCTCACTCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

139

Amino Acids

15.58

Weight (kDa)

8.82

Isoelectric Point (pI)

23.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	1 - 123	9.3e-48	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018551)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0316531 RchiOBHm_Chr1g0355431 RchiOBHm_Chr1g0357631 RchiOBHm_Chr5g0055631 RchiOBHm_Chr5g0082601
rosa_multiflora	Rmu_co8371173.1_g000001 Rmu_sc0002037.1_g000004
rosa_roxburghii	Rroxscaffold_7G00183280
rosa_samantha	Rh1DG078000 Rh1DG257300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	212, 283
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	308
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	268
AfaI	GTAC	2 cut(s)	310, 393
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	250
AjnI	CCWGG	2 cut(s)	124, 228
AluBI	AGCT	2 cut(s)	96, 212
AluI	AGCT	2 cut(s)	96, 212
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	1 cut(s)	268
Asp718I	GGTACC	1 cut(s)	308
AsuHPI	GGTGA	3 cut(s)	32, 122, 350
AsuII	TTCGAA	1 cut(s)	181
AxyI	CCTNAGG	1 cut(s)	322
BalI	TGGCCA	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	308
BauI	CACGAG	1 cut(s)	15
BccI	CCATC	3 cut(s)	32, 250, 254
BciT130I	CCWGG	2 cut(s)	126, 230
BciVI	GTATCC	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	91
BfuAI	ACCTGC	2 cut(s)	212, 283
BfuI	GTATCC	1 cut(s)	53
Bme1390I	CCNGG	2 cut(s)	126, 230
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	2 cut(s)	126, 230
BmsI	GCATC	1 cut(s)	366
BplI	GAGNNNNNCTC	2 cut(s)	327, 359
Bpu14I	TTCGAA	1 cut(s)	181
BsaAI	YACGTR	1 cut(s)	391
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	65, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse21I	CCTNAGG	1 cut(s)	322
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	126, 230
BseDI	CCNNGG	2 cut(s)	65, 80
BseGI	GGATG	3 cut(s)	43, 75, 265
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMI	GCAATG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	378
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	308
BsiWI	CGTACG	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	310
BspMI	ACCTGC	2 cut(s)	212, 283
BspPI	GGATC	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	65, 80
BssMI	GATC	1 cut(s)	76
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	126, 230
Bst6I	CTCTTC	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	391
BstBI	TTCGAA	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	149, 322
BstDSI	CCRYGG	1 cut(s)	65
BstEII	GGTNACC	2 cut(s)	232, 338
BstF5I	GGATG	3 cut(s)	43, 75, 265
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 218, 385
BstNI	CCWGG	2 cut(s)	126, 230
BstPI	GGTNACC	2 cut(s)	232, 338
BstSCI	CCNGG	2 cut(s)	124, 228
BstSFI	CTRYAG	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	322
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	43, 75, 265
BveI	ACCTGC	2 cut(s)	212, 283
Cac8I	GCNNGC	1 cut(s)	386
Csp6I	GTAC	2 cut(s)	309, 392
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	7 cut(s)	14, 90, 96, 140, 212, 245, 270
CviKI_1	RGCY	7 cut(s)	14, 90, 96, 140, 212, 245, 270
CviQI	GTAC	2 cut(s)	309, 392
DdeI	CTNAG	2 cut(s)	149, 322
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	230
Eco81I	CCTNAGG	1 cut(s)	322
Eco91I	GGTNACC	2 cut(s)	232, 338
EcoO65I	GGTNACC	2 cut(s)	232, 338
EcoRII	CCWGG	2 cut(s)	124, 228
EcoT14I	CCWWGG	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	1 cut(s)	269
FaiI	YATR	6 cut(s)	156, 216, 240, 267, 286, 290
FatI	CATG	1 cut(s)	265
FauI	CCCGC	1 cut(s)	393
FokI	GGATG	3 cut(s)	50, 82, 272
HaeIII	GGCC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	269
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	2 cut(s)	175, 396
HphI	GGTGA	3 cut(s)	32, 122, 350
Hpy166II	GTNNAC	2 cut(s)	165, 357
Hpy8I	GTNNAC	2 cut(s)	165, 357
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 218, 385
HpyF3I	CTNAG	2 cut(s)	149, 322
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	269
KpnI	GGTACC	1 cut(s)	312
Kzo9I	GATC	1 cut(s)	76
LpnPI	CCDG	7 cut(s)	111, 138, 207, 215, 242, 288, 384
LweI	GCATC	1 cut(s)	366
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	3 cut(s)	188, 232, 338
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	2 cut(s)	91, 170
MlsI	TGGCCA	1 cut(s)	270
MluNI	TGGCCA	1 cut(s)	270
MlyI	GAGTC	2 cut(s)	169, 390
MnlI	CCTC	5 cut(s)	28, 329, 353, 356, 415
Mox20I	TGGCCA	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	270
MseI	TTAA	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	126, 230
MvaI	CCWGG	2 cut(s)	126, 230
MwoI	GCNNNNNNNGC	3 cut(s)	209, 218, 385
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	269
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	338
NspV	TTCGAA	1 cut(s)	181
Pfl23II	CGTACG	1 cut(s)	391
PleI	GAGTC	2 cut(s)	169, 390
PpsI	GAGTC	2 cut(s)	169, 390
Ppu21I	YACGTR	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	124, 228
PspEI	GGTNACC	2 cut(s)	232, 338
PspGI	CCWGG	2 cut(s)	124, 228
PspLI	CGTACG	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	310
RsaI	GTAC	2 cut(s)	310, 393
RsaNI	GTAC	2 cut(s)	309, 392
SaqAI	TTAA	1 cut(s)	317
Sau3AI	GATC	1 cut(s)	76
SchI	GAGTC	2 cut(s)	169, 390
ScrFI	CCNGG	2 cut(s)	126, 230
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	1 cut(s)	91
SfuI	TTCGAA	1 cut(s)	181
SsiI	CCGC	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	124, 228
StyI	CCWWGG	1 cut(s)	80
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.