Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018551

Physical Location & Seq

Genomic Coordinates Forward (+)

14359018 .. 14374267

Gene Structure 15250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG078000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGACTGCATCTCTCTCTTCTTCATCCAAACCCACAATTTCAGAGCGAGAGAGATCTGAGCTGGGATTGGCCGATTGGGTTCTGAAGTGCTTATTGGGATTTGGGTGGAAACAAGGTAGTGAAGATTTTCCGTGCAAATATAGGTTGGCAGATAATCTGGTGGCTCGTGGTGATAAAAGTGGAGAGGATGGTATCCCAATGCTACTAAAAATCCCACGGCTGTTTGATCCTTGGGGTGGCTACAGCATCATCGGGTTTGGTGATATTGTCTTACCTGGATCGGTTGTAACCTTTTCACTAAGGTCTCCGGTCACCTATGTGGCTTTGAACCTGATGGATGGACATGGCCAACCTGCTTTGTTATACATACTTCCATTCACACTTGGTACCTTTTTAACCTTGGGACAGATGAGAGGTGACCTCAAAGTTTTGTGGACAAGACGAGAACCAGAGAGGCCTTGCCCGCACGTACGACTCCAATCCTCTCACTATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

165

Amino Acids

18.36

Weight (kDa)

8.48

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	54 - 101	2.2e-12	Signal peptide peptidase
Peptidase_A22B	PF04258	104 - 149	1.1e-12	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018551)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0316531 RchiOBHm_Chr1g0355431 RchiOBHm_Chr1g0357631 RchiOBHm_Chr5g0055631 RchiOBHm_Chr5g0082601
rosa_multiflora	Rmu_co8371173.1_g000001 Rmu_sc0002037.1_g000004
rosa_roxburghii	Rroxscaffold_7G00183280
rosa_samantha	Rh1DG078000 Rh1DG257300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	361
Acc65I	GGTACC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	386
AciI	CCGC	1 cut(s)	464
AclWI	GGATC	2 cut(s)	221, 286
AcoI	YGGCCR	2 cut(s)	69, 346
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	2 cut(s)	388, 471
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	221, 286
AoxI	GGCC	3 cut(s)	69, 346, 455
Asp700I	GAANNNNTTC	1 cut(s)	126
Asp718I	GGTACC	1 cut(s)	386
AsuHPI	GGTGA	4 cut(s)	182, 272, 304, 428
BalI	TGGCCA	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	386
BauI	CACGAG	1 cut(s)	165
BccI	CCATC	3 cut(s)	182, 328, 332
BceAI	ACGGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	241
BfuAI	ACCTGC	1 cut(s)	361
BfuI	GTATCC	1 cut(s)	203
BglII	AGATCT	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	17, 255
BplI	GAGNNNNNCTC	2 cut(s)	405, 437
BsaAI	YACGTR	1 cut(s)	469
BsaI	GGTCTC	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	215, 230, 399
BsaWI	WCCGGW	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	215, 230, 399
BseGI	GGATG	3 cut(s)	23, 193, 343
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	61
BshFI	GGCC	3 cut(s)	71, 348, 457
BshNI	GGYRCC	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	308
BsiWI	CGTACG	1 cut(s)	469
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	417
BsnI	GGCC	3 cut(s)	71, 348, 457
Bso31I	GGTCTC	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	53, 226, 278
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	3 cut(s)	71, 348, 457
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	388
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	2 cut(s)	221, 286
BspT107I	GGYRCC	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	309
BssECI	CCNNGG	3 cut(s)	215, 230, 399
BssMI	GATC	3 cut(s)	53, 226, 278
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	2 cut(s)	230, 399
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	22
BstBAI	YACGTR	1 cut(s)	469
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	2 cut(s)	57, 299
BstDSI	CCRYGG	1 cut(s)	215
BstEII	GGTNACC	2 cut(s)	310, 416
BstF5I	GGATG	3 cut(s)	23, 193, 343
BstKTI	GATC	3 cut(s)	56, 229, 281
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	3 cut(s)	53, 226, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstNI	CCWGG	1 cut(s)	276
BstPI	GGTNACC	2 cut(s)	310, 416
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	3 cut(s)	71, 348, 457
BtgI	CCRYGG	1 cut(s)	215
BtsCI	GGATG	3 cut(s)	23, 193, 343
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	464
Csp6I	GTAC	2 cut(s)	387, 470
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	8 cut(s)	61, 71, 164, 220, 240, 323, 348, 457
CviKI_1	RGCY	8 cut(s)	61, 71, 164, 220, 240, 323, 348, 457
CviQI	GTAC	2 cut(s)	387, 470
DdeI	CTNAG	2 cut(s)	57, 299
DpnI	GATC	3 cut(s)	55, 228, 280
DpnII	GATC	3 cut(s)	53, 226, 278
EaeI	YGGCCR	2 cut(s)	69, 346
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	230, 399
Eco147I	AGGCCT	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	104
Eco91I	GGTNACC	2 cut(s)	310, 416
EcoO65I	GGTNACC	2 cut(s)	310, 416
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	230, 399
ErhI	CCWWGG	2 cut(s)	230, 399
FaeI	CATG	1 cut(s)	347
FaiI	YATR	5 cut(s)	141, 318, 345, 364, 368
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	1 cut(s)	343
FauI	CCCGC	1 cut(s)	471
FokI	GGATG	3 cut(s)	10, 200, 350
GsaI	CCCAGC	1 cut(s)	65
HaeIII	GGCC	3 cut(s)	71, 348, 457
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	1 cut(s)	347
HinfI	GANTC	1 cut(s)	474
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	4 cut(s)	182, 272, 304, 428
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	3 cut(s)	43, 58, 84
Hpy8I	GTNNAC	1 cut(s)	435
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	2 cut(s)	8, 135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	2 cut(s)	57, 299
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	1 cut(s)	347
KpnI	GGTACC	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	53, 226, 278
LpnPI	CCDG	8 cut(s)	47, 143, 261, 288, 321, 344, 366, 462
LweI	GCATC	2 cut(s)	17, 255
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	3 cut(s)	286, 310, 416
MalI	GATC	3 cut(s)	55, 228, 280
MboI	GATC	3 cut(s)	53, 226, 278
MboII	GAAGA	3 cut(s)	9, 12, 134
MflI	RGATCY	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	1 cut(s)	36
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	468
MnlI	CCTC	5 cut(s)	178, 407, 431, 447, 493
Mox20I	TGGCCA	1 cut(s)	348
MroXI	GAANNNNTTC	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	1 cut(s)	395
MslI	CAYNNNNRTG	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	348
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	463
NdeII	GATC	3 cut(s)	53, 226, 278
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	1 cut(s)	388
NmuCI	GTSAC	2 cut(s)	310, 416
OliI	CACNNNNGTG	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	457
PdmI	GAANNNNTTC	1 cut(s)	126
Pfl23II	CGTACG	1 cut(s)	469
PleI	GAGTC	1 cut(s)	468
PpsI	GAGTC	1 cut(s)	468
Ppu21I	YACGTR	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	2 cut(s)	310, 416
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	274
PspLI	CGTACG	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	2 cut(s)	388, 471
RsaNI	GTAC	2 cut(s)	387, 470
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	395
Sau3AI	GATC	3 cut(s)	53, 226, 278
SchI	GAGTC	1 cut(s)	468
ScrFI	CCNGG	1 cut(s)	276
SfaNI	GCATC	2 cut(s)	17, 255
SfcI	CTRYAG	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	317
Sse9I	AATT	1 cut(s)	36
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	1 cut(s)	464
StuI	AGGCCT	1 cut(s)	457
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	2 cut(s)	230, 399
TaiI	ACGT	1 cut(s)	471
TasI	AATT	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TseFI	GTSAC	2 cut(s)	310, 416
Tsp45I	GTSAC	2 cut(s)	310, 416
TspDTI	ATGAA	1 cut(s)	12
TspGWI	ACGGA	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.