RchiOBHm_Chr1g0359521

Calcineurin B-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
51481650 .. 51483752
2103 bp
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UTR
Exon/CDS
Intron
PRQ58458

Sequence Viewer

Length: 708 bp
ATGAATAATATTTTGCTGATTTTTTGTCATAGTGAAGTGTATAGTTTGAATCAAATGGATGTTTGGGAATTGGCAGTTTCTGTGAGTGAGGTGGAGTCTTTGTATGAGCTATACAAGAAATTAAGCAGCTCTGTAGTTAAAGATGGGCTTATACACAAGATATTTGATCTTTTCGATGTCAATAAAAATGAGCATATCGAGTGTGAAGAGTTTGTTCATACATTGAGTGTTTTCCACCCTAAAACTCCTGATGAAGTCAAAATTACATGTAAGATCCAGACTCGTGATATTAAATCCTGTATTGTCCATTTCCTTGTGTTTGAAGTTTCCATATTTCCACATGGCACTGTCCTTTTGACTCATGTAGATACTAAAATGGATATAATCATGGCAGATGCTTTTAAATTATATGATTTGAGGCACACTGGTTACATCGAGCGTGAGGAGGCAAGTCCACTGTATTCTTACTTTGGTTGTTCATTCAGTTACCCTGGTGGACTTCTGACATTCATGGAAGCAGATGGAAAAGCAGACGGTAGGATTGATGAAGAAGAGTGGAAGGAATATGTAGCTAAAAATCCTTCTCTTCTGAAAAACATGACTCTTCCATCCTTAATGTATGTCCTAACCCTGGAGTCTACTTCTGAGGACATTTCTCTAGCATTTCCCAGCTTTGTGCTGAATACTCAAGCAACTAGCCATAATTAA

Protein Analysis

235

Amino Acids

26.9

Weight (kDa)

4.93

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018517)

Species Orthologous Gene IDs
prunus_persica Prupe.2G188700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359511 RchiOBHm_Chr1g0359521
rosa_multiflora Rmu_sc0002556.1_g000015
rosa_roxburghii Rroxscaffold_4G00296920
rosa_rugosa Rorug01G0272000
rosa_samantha Rh1BG251400 Rh1DG280500
rosa_wichuraiana Rw1G025360 Rw1G025370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 638
AclWI GGATC 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 631
AflIII ACRYGT 1 cut(s) 266
AgsI TTSAA 2 cut(s) 49, 323
AjnI CCWGG 2 cut(s) 490, 630
AluBI AGCT 4 cut(s) 109, 129, 572, 672
AluI AGCT 4 cut(s) 109, 129, 572, 672
AlwI GGATC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 126
BauI CACGAG 1 cut(s) 282
BbvI GCAGC 1 cut(s) 138
BccI CCATC 3 cut(s) 137, 515, 616
BciT130I CCWGG 2 cut(s) 492, 632
BfaI CTAG 2 cut(s) 659, 696
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 492, 632
BmrFI CCNGG 2 cut(s) 492, 632
BmsI GCATC 1 cut(s) 385
BpmI CTGGAG 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 672
BsaJI CCNNGG 2 cut(s) 490, 630
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse1I ACTGG 1 cut(s) 430
BseBI CCWGG 2 cut(s) 492, 632
BseDI CCNNGG 2 cut(s) 490, 630
BseGI GGATG 2 cut(s) 64, 608
BseLI CCNNNNNNNGG 1 cut(s) 631
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 1 cut(s) 430
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 1 cut(s) 138
BseYI CCCAGC 1 cut(s) 668
BslI CCNNNNNNNGG 1 cut(s) 631
Bsp143I GATC 2 cut(s) 166, 273
BspCNI CTCAG 1 cut(s) 637
BspPI GGATC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 430
BssECI CCNNGG 2 cut(s) 490, 630
BssMI GATC 2 cut(s) 166, 273
BssSI CACGAG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 492, 632
Bst4CI ACNGT 3 cut(s) 349, 459, 536
Bst6I CTCTTC 4 cut(s) 201, 546, 591, 609
BstDEI CTNAG 1 cut(s) 645
BstF5I GGATG 2 cut(s) 64, 608
BstKTI GATC 2 cut(s) 169, 276
BstMBI GATC 2 cut(s) 166, 273
BstNI CCWGG 2 cut(s) 492, 632
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 2 cut(s) 490, 630
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BtsCI GGATG 2 cut(s) 64, 608
BtsIMutI CAGTG 3 cut(s) 345, 423, 455
CaiI CAGNNNCTG 1 cut(s) 80
CviAII CATG 6 cut(s) 267, 341, 362, 388, 511, 598
CviJI RGCY 6 cut(s) 109, 129, 148, 572, 672, 699
CviKI_1 RGCY 6 cut(s) 109, 129, 148, 572, 672, 699
DdeI CTNAG 1 cut(s) 645
DpnI GATC 2 cut(s) 168, 275
DpnII GATC 2 cut(s) 166, 273
DraI TTTAAA 1 cut(s) 403
Eam1104I CTCTTC 4 cut(s) 201, 546, 591, 609
EarI CTCTTC 4 cut(s) 201, 546, 591, 609
EcoRII CCWGG 2 cut(s) 490, 630
FaeI CATG 6 cut(s) 270, 344, 365, 391, 514, 601
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FatI CATG 6 cut(s) 266, 340, 361, 387, 510, 597
FblI GTMKAC 1 cut(s) 638
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 2 cut(s) 71, 595
Fsp4HI GCNGC 1 cut(s) 127
FspBI CTAG 2 cut(s) 659, 696
GluI GCNGC 1 cut(s) 127
GsaI CCCAGC 1 cut(s) 672
GsuI CTGGAG 1 cut(s) 653
Hin1II CATG 6 cut(s) 270, 344, 365, 391, 514, 601
HinfI GANTC 6 cut(s) 49, 95, 280, 358, 601, 635
Hpy166II GTNNAC 3 cut(s) 455, 497, 639
Hpy188I TCNGA 3 cut(s) 504, 591, 646
Hpy188III TCNNGA 3 cut(s) 248, 277, 284
Hpy8I GTNNAC 3 cut(s) 455, 497, 639
HpyAV CCTTC 2 cut(s) 553, 591
HpyCH4III ACNGT 3 cut(s) 349, 459, 536
HpyF3I CTNAG 1 cut(s) 645
Hsp92II CATG 6 cut(s) 270, 344, 365, 391, 514, 601
Kzo9I GATC 2 cut(s) 166, 273
LpnPI CCDG 9 cut(s) 261, 290, 310, 411, 477, 504, 617, 644, 682
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 1 cut(s) 385
MaeI CTAG 2 cut(s) 659, 696
MaeIII GTNAC 2 cut(s) 428, 485
MalI GATC 2 cut(s) 168, 275
MboI GATC 2 cut(s) 166, 273
MboII GAAGA 5 cut(s) 218, 560, 563, 578, 596
MflI RGATCY 1 cut(s) 273
MluCI AATT 5 cut(s) 68, 119, 261, 404, 703
MlyI GAGTC 5 cut(s) 104, 274, 352, 595, 644
MnlI CCTC 5 cut(s) 82, 411, 436, 439, 640
MseI TTAA 6 cut(s) 122, 138, 291, 402, 614, 706
MspR9I CCNGG 2 cut(s) 492, 632
MvaI CCWGG 2 cut(s) 492, 632
NdeII GATC 2 cut(s) 166, 273
NlaIII CATG 6 cut(s) 270, 344, 365, 391, 514, 601
NspI RCATGY 1 cut(s) 270
PciI ACATGT 1 cut(s) 266
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 128
PleI GAGTC 5 cut(s) 103, 274, 352, 595, 643
PpsI GAGTC 5 cut(s) 103, 274, 352, 595, 643
PscI ACATGT 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 490, 630
PspFI CCCAGC 1 cut(s) 668
PspGI CCWGG 2 cut(s) 490, 630
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 273
SaqAI TTAA 6 cut(s) 122, 138, 291, 402, 614, 706
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 2 cut(s) 166, 273
SchI GAGTC 5 cut(s) 104, 274, 352, 595, 644
ScrFI CCNGG 2 cut(s) 492, 632
SetI ASST 5 cut(s) 93, 111, 131, 574, 674
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 687
SmoI CTYRAG 1 cut(s) 687
Sse9I AATT 5 cut(s) 68, 119, 261, 404, 703
SspI AATATT 1 cut(s) 10
SspMI CTAG 2 cut(s) 659, 696
StyD4I CCNGG 2 cut(s) 490, 630
TaaI ACNGT 3 cut(s) 349, 459, 536
TaqI TCGA 3 cut(s) 174, 198, 435
TasI AATT 5 cut(s) 68, 119, 261, 404, 703
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 6 cut(s) 122, 138, 291, 402, 614, 706
Tru9I TTAA 6 cut(s) 122, 138, 291, 402, 614, 706
TscAI CASTG 3 cut(s) 352, 430, 462
TseI GCWGC 1 cut(s) 126
TspDTI ATGAA 6 cut(s) 17, 206, 267, 468, 499, 561
TspRI CASTG 3 cut(s) 352, 430, 462
XceI RCATGY 1 cut(s) 270
XmiI GTMKAC 1 cut(s) 638
XspI CTAG 2 cut(s) 659, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.