Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0018517

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG251400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGTTGCGCTAGCTCAAACAAAGCCAGAGTCAAAACTGGCCCAAGTGCCAATTTAGAGCTTAATCCGGCTATTCTTGCTTGTAAGACACCCTTTTCTGTGAGTGAGGTAGAGTCTTTGTATGAGCTATATAAGAAACTAAGCAGCTCTGTAGTTCAAGATGGGCTTATACACAAGGAAGAGTTGCAGCTTGCGCTTTTTCAAAACAACAGTAAGCAGAACCTCTTTTTCGACAGGATATTTGATCTTTTCGATGTCAATAACAATGGGCGTATTGAGTTTGAAGAGTTTGTTCATACATTGAGTGTTTTCCACCCAAGAACTCCTGATGAAGTCAAAATTACATATGCTTTTAAATTATATGATTTGAGGCACACTGGTTACATCGAGCGTGAGGAGTTGAAGGAGATGGTGCTGGCTCTTCTGAACGAATCTGATCTGATTCTTTCAGATGATACTGTTGAAATGATTGTGAATAAGACATTCATGGAAGCAGATGGAAAAGCAGATGGTAAGATTGATGAAGAAGAGTGGAAGGAATATGTAGCTAAAAATCCTTCTCTTCTGAAAAACATGACTCTTCCATACTTAATGTATGTCCTAACCCTGGAGTCTACTTCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

208

Amino Acids

23.83

Weight (kDa)

4.81

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	53 - 99	7.7e-06	EF-hand domain pair
EF-hand_1	PF00036	77 - 101	2e-07	EF hand domain
EF-hand_7	PF13499	112 - 181	2.4e-09	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018517)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G188700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359511 RchiOBHm_Chr1g0359521
rosa_multiflora	Rmu_sc0002556.1_g000015
rosa_roxburghii	Rroxscaffold_4G00296920
rosa_rugosa	Rorug01G0272000
rosa_samantha	Rh1BG251400 Rh1DG280500
rosa_wichuraiana	Rw1G025360 Rw1G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	614
AfiI	CCNNNNNNNGG	1 cut(s)	607
AgsI	TTSAA	5 cut(s)	158, 203, 284, 403, 464
AjnI	CCWGG	1 cut(s)	606
AluBI	AGCT	6 cut(s)	15, 61, 127, 147, 190, 548
AluI	AGCT	6 cut(s)	15, 61, 127, 147, 190, 548
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	144, 187
ArsI	GACNNNNNNTTYG	4 cut(s)	15, 47, 224, 256
AspLEI	GCGC	2 cut(s)	11, 196
AspS9I	GGNCC	1 cut(s)	41
AsuNHI	GCTAGC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	156, 199
BccI	CCATC	4 cut(s)	155, 403, 491, 503
BciT130I	CCWGG	1 cut(s)	608
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	2 cut(s)	145, 188
BlsI	GCNGC	2 cut(s)	146, 189
Bme1390I	CCNGG	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	608
BmtI	GCTAGC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	606
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	2 cut(s)	43, 382
BseBI	CCWGG	1 cut(s)	608
BseDI	CCNNGG	1 cut(s)	606
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	2 cut(s)	43, 382
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	156, 199
BshFI	GGCC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	607
BsnI	GGCC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	244, 436
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	613
BspOI	GCTAGC	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	43, 382
BssECI	CCNNGG	1 cut(s)	606
BssMI	GATC	2 cut(s)	244, 436
Bst2UI	CCWGG	1 cut(s)	608
Bst4CI	ACNGT	2 cut(s)	212, 460
Bst6I	CTCTTC	6 cut(s)	174, 279, 426, 522, 567, 585
BstC8I	GCNNGC	3 cut(s)	13, 192, 417
BstDEI	CTNAG	2 cut(s)	140, 621
BstHHI	GCGC	2 cut(s)	11, 196
BstKTI	GATC	2 cut(s)	247, 439
BstMBI	GATC	2 cut(s)	244, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 193
BstNI	CCWGG	1 cut(s)	608
BstSCI	CCNGG	1 cut(s)	606
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	156, 199
BsuRI	GGCC	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	3 cut(s)	13, 192, 417
CfoI	GCGC	2 cut(s)	11, 196
Cfr13I	GGNCC	1 cut(s)	41
CviAII	CATG	2 cut(s)	487, 574
DdeI	CTNAG	2 cut(s)	140, 621
DpnI	GATC	2 cut(s)	246, 438
DpnII	GATC	2 cut(s)	244, 436
DraI	TTTAAA	1 cut(s)	355
Eam1104I	CTCTTC	6 cut(s)	174, 279, 426, 522, 567, 585
EarI	CTCTTC	6 cut(s)	174, 279, 426, 522, 567, 585
EcoRII	CCWGG	1 cut(s)	606
FaeI	CATG	2 cut(s)	490, 577
FalI	AAGNNNNNCTT	4 cut(s)	77, 109, 150, 182
FatI	CATG	2 cut(s)	486, 573
FauNDI	CATATG	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	2 cut(s)	145, 188
Fsp4HI	GCNGC	2 cut(s)	145, 188
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	2 cut(s)	10, 195
GluI	GCNGC	2 cut(s)	145, 188
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	68
HhaI	GCGC	2 cut(s)	11, 196
Hin1II	CATG	2 cut(s)	490, 577
Hin6I	GCGC	2 cut(s)	9, 194
HinP1I	GCGC	2 cut(s)	9, 194
HinfI	GANTC	6 cut(s)	30, 113, 431, 442, 577, 611
HpaII	CCGG	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	615
Hpy188I	TCNGA	6 cut(s)	426, 436, 441, 451, 567, 622
Hpy188III	TCNNGA	2 cut(s)	158, 326
Hpy8I	GTNNAC	1 cut(s)	615
HpyAV	CCTTC	3 cut(s)	397, 529, 567
HpyCH4III	ACNGT	2 cut(s)	212, 460
HpyCH4V	TGCA	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 193
HpyF3I	CTNAG	2 cut(s)	140, 621
Hsp92II	CATG	2 cut(s)	490, 577
HspAI	GCGC	2 cut(s)	9, 194
Kzo9I	GATC	2 cut(s)	244, 436
LguI	GCTCTTC	1 cut(s)	426
LpnPI	CCDG	9 cut(s)	24, 40, 81, 220, 339, 363, 401, 593, 620
Lsp1109I	GCAGC	2 cut(s)	156, 199
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	2 cut(s)	246, 438
MboI	GATC	2 cut(s)	244, 436
MboII	GAAGA	7 cut(s)	191, 296, 413, 536, 539, 554, 572
MluCI	AATT	3 cut(s)	52, 339, 356
MlyI	GAGTC	4 cut(s)	39, 122, 571, 620
MnlI	CCTC	4 cut(s)	100, 233, 363, 388
MseI	TTAA	3 cut(s)	63, 354, 590
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	608
MvaI	CCWGG	1 cut(s)	608
MwoI	GCNNNNNNNGC	2 cut(s)	77, 193
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	2 cut(s)	244, 436
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	490, 577
PciSI	GCTCTTC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	431, 442
PkrI	GCNGC	2 cut(s)	146, 189
PleI	GAGTC	4 cut(s)	38, 121, 571, 619
PpsI	GAGTC	4 cut(s)	38, 121, 571, 619
Psp6I	CCWGG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	606
PspPI	GGNCC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	3 cut(s)	63, 354, 590
SatI	GCNGC	2 cut(s)	145, 188
Sau3AI	GATC	2 cut(s)	244, 436
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	4 cut(s)	39, 122, 571, 620
ScrFI	CCNGG	1 cut(s)	608
SetI	ASST	8 cut(s)	17, 63, 111, 129, 149, 192, 225, 550
SfcI	CTRYAG	1 cut(s)	150
Sse9I	AATT	3 cut(s)	52, 339, 356
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	606
TaaI	ACNGT	2 cut(s)	212, 460
TaqI	TCGA	3 cut(s)	231, 252, 387
TasI	AATT	3 cut(s)	52, 339, 356
TfiI	GAWTC	2 cut(s)	431, 442
Tru1I	TTAA	3 cut(s)	63, 354, 590
Tru9I	TTAA	3 cut(s)	63, 354, 590
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	2 cut(s)	144, 187
TspDTI	ATGAA	4 cut(s)	284, 345, 475, 537
TspRI	CASTG	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	614
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.