Rroxscaffold_4G00296920

Calcineurin B-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
16941810 .. 16947894
6085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00296920.1

Sequence Viewer

Length: 654 bp
ATGGGTTGCGCAAGCTCAAACAAAGCCAGAGTCAAAGCTCGCCCAAGTGCCAATTTAGAGCTTAATCCGGCTATTCTTGCTTGCAAGACACCCTTTTCTGTGAGTGAGGTAGAGTCTTTGTATGAGCTATATAAGAAACTAAGCAGCTCTGTAGTTCAAGATGGGCTTATACACAAGGAAGAGTTGCAGCTTGCGCTTTTTCAAAACAGCAGTAAGCAGAACCTCTTTTTCGACAGGATATTTGATCTTTTCGATGTCAATAACAATGGGCGTATTGAGTTTGAAGAGTTTGTTCATACATTGAGTGTTTTCCACCCAAGAACTCCTGATGAAGTCAAAATTACATATGCTTTTAAGTTATATGATTTGAGGCACACTGGTTACATTGAGCCTGAGGAGTTGAAGGAGATGGTGGTGGCTCTTCTGAACGAATCTGATCTGATTCTTTCAGATGATATTGTTGAAATGATTGTAAATAAGACATTCATGGAAGCAGATGGAAAAGCAGACGGTCGGATTGATGAAGAAGAGTGGAAGGAATATGTAGCGAAAAATCCTTCTCTTCTGAAAAACATGACTCTTCCATACTTAATGGACATATCTCTAGCATTTCCCAGCTTTGTGCTGAATACTCAAGCAACTACACATAATTAA

Protein Analysis

217

Amino Acids

24.78

Weight (kDa)

4.88

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 53 - 99 9.7e-06 EF-hand domain pair
EF-hand_1 PF00036 77 - 101 2.1e-07 EF hand domain
EF-hand_7 PF13499 112 - 181 7.3e-09 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018517)

Species Orthologous Gene IDs
prunus_persica Prupe.2G188700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359511 RchiOBHm_Chr1g0359521
rosa_multiflora Rmu_sc0002556.1_g000015
rosa_roxburghii Rroxscaffold_4G00296920
rosa_rugosa Rorug01G0272000
rosa_samantha Rh1BG251400 Rh1DG280500
rosa_wichuraiana Rw1G025360 Rw1G025370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 10
AgsI TTSAA 5 cut(s) 158, 203, 284, 403, 464
AluBI AGCT 7 cut(s) 15, 38, 61, 127, 147, 190, 618
AluI AGCT 7 cut(s) 15, 38, 61, 127, 147, 190, 618
ApeKI GCWGC 2 cut(s) 144, 187
ArsI GACNNNNNNTTYG 4 cut(s) 15, 47, 224, 256
AspLEI GCGC 2 cut(s) 11, 196
AxyI CCTNAGG 1 cut(s) 393
BbvI GCAGC 2 cut(s) 156, 199
BccI CCATC 3 cut(s) 155, 403, 491
BfaI CTAG 1 cut(s) 605
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 2 cut(s) 145, 188
BlsI GCNGC 2 cut(s) 146, 189
BpuEI CTTGAG 1 cut(s) 618
Bse1I ACTGG 1 cut(s) 382
Bse21I CCTNAGG 1 cut(s) 393
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 1 cut(s) 410
BseXI GCAGC 2 cut(s) 156, 199
BseYI CCCAGC 1 cut(s) 614
Bsh1285I CGRYCG 1 cut(s) 514
BsiEI CGRYCG 1 cut(s) 514
BsiSI CCGG 1 cut(s) 68
Bsp143I GATC 2 cut(s) 244, 436
BspCNI CTCAG 1 cut(s) 385
BspQI GCTCTTC 1 cut(s) 426
BsrI ACTGG 1 cut(s) 382
BssMI GATC 2 cut(s) 244, 436
Bst4CI ACNGT 1 cut(s) 512
Bst6I CTCTTC 6 cut(s) 174, 279, 426, 522, 567, 585
BstC8I GCNNGC 4 cut(s) 13, 40, 82, 192
BstDEI CTNAG 2 cut(s) 140, 393
BstHHI GCGC 2 cut(s) 11, 196
BstKTI GATC 2 cut(s) 247, 439
BstMBI GATC 2 cut(s) 244, 436
BstMCI CGRYCG 1 cut(s) 514
BstMWI GCNNNNNNNGC 2 cut(s) 77, 193
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 156, 199
Bsu36I CCTNAGG 1 cut(s) 393
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 4 cut(s) 13, 40, 82, 192
CfoI GCGC 2 cut(s) 11, 196
CviAII CATG 2 cut(s) 487, 574
DdeI CTNAG 2 cut(s) 140, 393
DpnI GATC 2 cut(s) 246, 438
DpnII GATC 2 cut(s) 244, 436
Eam1104I CTCTTC 6 cut(s) 174, 279, 426, 522, 567, 585
EarI CTCTTC 6 cut(s) 174, 279, 426, 522, 567, 585
Eco81I CCTNAGG 1 cut(s) 393
FaeI CATG 2 cut(s) 490, 577
FalI AAGNNNNNCTT 4 cut(s) 77, 109, 150, 182
FatI CATG 2 cut(s) 486, 573
FauNDI CATATG 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 145, 188
Fsp4HI GCNGC 2 cut(s) 145, 188
FspBI CTAG 1 cut(s) 605
FspI TGCGCA 1 cut(s) 10
GlaI GCGC 2 cut(s) 10, 195
GluI GCNGC 2 cut(s) 145, 188
GsaI CCCAGC 1 cut(s) 618
HapII CCGG 1 cut(s) 68
HhaI GCGC 2 cut(s) 11, 196
Hin1II CATG 2 cut(s) 490, 577
Hin6I GCGC 2 cut(s) 9, 194
HinP1I GCGC 2 cut(s) 9, 194
HinfI GANTC 5 cut(s) 30, 113, 431, 442, 577
HpaII CCGG 1 cut(s) 68
Hpy188I TCNGA 6 cut(s) 426, 436, 441, 451, 516, 567
Hpy188III TCNNGA 2 cut(s) 158, 326
HpyAV CCTTC 3 cut(s) 397, 529, 567
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4V TGCA 2 cut(s) 84, 187
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 193
HpyF3I CTNAG 2 cut(s) 140, 393
Hsp92II CATG 2 cut(s) 490, 577
HspAI GCGC 2 cut(s) 9, 194
Kzo9I GATC 2 cut(s) 244, 436
LguI GCTCTTC 1 cut(s) 426
LpnPI CCDG 7 cut(s) 40, 81, 220, 339, 363, 405, 628
Lsp1109I GCAGC 2 cut(s) 156, 199
MaeI CTAG 1 cut(s) 605
MaeIII GTNAC 1 cut(s) 380
MalI GATC 2 cut(s) 246, 438
MboI GATC 2 cut(s) 244, 436
MboII GAAGA 7 cut(s) 191, 296, 413, 536, 539, 554, 572
MluCI AATT 3 cut(s) 52, 339, 649
MlyI GAGTC 3 cut(s) 39, 122, 571
MmeI TCCRAC 1 cut(s) 494
MnlI CCTC 4 cut(s) 100, 233, 363, 388
MseI TTAA 4 cut(s) 63, 354, 590, 652
MspI CCGG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 77, 193
NdeI CATATG 1 cut(s) 346
NdeII GATC 2 cut(s) 244, 436
NlaIII CATG 2 cut(s) 490, 577
NsbI TGCGCA 1 cut(s) 10
PciSI GCTCTTC 1 cut(s) 426
PfeI GAWTC 2 cut(s) 431, 442
PkrI GCNGC 2 cut(s) 146, 189
PleI GAGTC 3 cut(s) 38, 121, 571
PpsI GAGTC 3 cut(s) 38, 121, 571
PspFI CCCAGC 1 cut(s) 614
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 4 cut(s) 63, 354, 590, 652
SatI GCNGC 2 cut(s) 145, 188
Sau3AI GATC 2 cut(s) 244, 436
SchI GAGTC 3 cut(s) 39, 122, 571
SetI ASST 9 cut(s) 17, 40, 63, 111, 129, 149, 192, 225, 620
SfcI CTRYAG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
Sse9I AATT 3 cut(s) 52, 339, 649
SspMI CTAG 1 cut(s) 605
TaaI ACNGT 1 cut(s) 512
TaqI TCGA 2 cut(s) 231, 252
TasI AATT 3 cut(s) 52, 339, 649
TfiI GAWTC 2 cut(s) 431, 442
Tru1I TTAA 4 cut(s) 63, 354, 590, 652
Tru9I TTAA 4 cut(s) 63, 354, 590, 652
TscAI CASTG 1 cut(s) 382
TseI GCWGC 2 cut(s) 144, 187
TspDTI ATGAA 4 cut(s) 284, 345, 475, 537
TspRI CASTG 1 cut(s) 382
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.