Rw1G025360

Calcineurin B-like protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
51982925 .. 51985254
2330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G025360.1

Sequence Viewer

Length: 657 bp
ATGGGTTGCGCAAGCTCAAACAAAGCCAGAGTCAAAGCTGGCCCAAGTGCCAATTTAAAGCTTAATCCGGCTATTCTTGCTTGTAAGACACCCTTTTCTGTGAGTGAGGTAGAGTCTTTGTATGAGCTATATAAGAAAATAAGCAGCTCTGTAGTTCAAGATGGGCTTATACACAAGGAAGAGTTGCAGCTTGCGCTTTTTCAAAACAGCAGTAAGCAGAACCTCTTTGTCGACAGGATATTTGATCTTTTCGATGTCAATAACAATGGGCGTATTGAGTTTGAAGAGTTTGTTCATACATTGAGTGTTTTCCACCCAAGAACTCCTGATGAAGTCAAAATTACATATGCTTTTAAGTTATATGATTTGAGGCACACTGGTTACATCGAGCGTGAGGAGTTGAAGGAGATGGTGGTGGCTCTTCTGAACGAATCTGATCTGATTCTTGCAGATGATATTGTTGAAATGATTGTGAATAAGACATTCATGGAAGCAGATGGAAAAGCAGACGGTAGGATTGATGAAGAAGAGTGGAAGGAATACGCAGCAAAAAACCCTTCTCTACTGAAAAACATGACTCTTCCATACTTGATGGACATATCTCTAGCATTTCCCAGCTTTGTGCTGAATACTCAAGCAGAAGAATCTCAATTGTAG

Protein Analysis

218

Amino Acids

24.78

Weight (kDa)

4.84

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 53 - 99 1.9e-06 EF-hand domain pair
EF-hand_1 PF00036 77 - 101 1.8e-07 EF hand domain
EF-hand_7 PF13499 112 - 181 9.6e-09 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018517)

Species Orthologous Gene IDs
prunus_persica Prupe.2G188700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359511 RchiOBHm_Chr1g0359521
rosa_multiflora Rmu_sc0002556.1_g000015
rosa_roxburghii Rroxscaffold_4G00296920
rosa_rugosa Rorug01G0272000
rosa_samantha Rh1BG251400 Rh1DG280500
rosa_wichuraiana Rw1G025360 Rw1G025370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 10
AccI GTMKAC 1 cut(s) 231
AgsI TTSAA 5 cut(s) 158, 203, 284, 403, 464
AluBI AGCT 7 cut(s) 15, 38, 61, 127, 147, 190, 618
AluI AGCT 7 cut(s) 15, 38, 61, 127, 147, 190, 618
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 3 cut(s) 144, 187, 545
ArsI GACNNNNNNTTYG 4 cut(s) 15, 47, 224, 256
AspLEI GCGC 2 cut(s) 11, 196
AspS9I GGNCC 1 cut(s) 41
BbvI GCAGC 3 cut(s) 156, 199, 557
BccI CCATC 4 cut(s) 155, 403, 491, 586
BfaI CTAG 1 cut(s) 605
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 3 cut(s) 145, 188, 546
BlsI GCNGC 3 cut(s) 146, 189, 547
BmgT120I GGNCC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 618
Bse1I ACTGG 1 cut(s) 382
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 1 cut(s) 410
BseXI GCAGC 3 cut(s) 156, 199, 557
BseYI CCCAGC 1 cut(s) 614
BshFI GGCC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 68
BsnI GGCC 1 cut(s) 42
Bsp143I GATC 2 cut(s) 244, 436
BspANI GGCC 1 cut(s) 42
BspQI GCTCTTC 1 cut(s) 426
BsrI ACTGG 1 cut(s) 382
BssMI GATC 2 cut(s) 244, 436
Bst4CI ACNGT 1 cut(s) 512
Bst6I CTCTTC 5 cut(s) 174, 279, 426, 522, 585
BstC8I GCNNGC 3 cut(s) 13, 40, 192
BstHHI GCGC 2 cut(s) 11, 196
BstKTI GATC 2 cut(s) 247, 439
BstMBI GATC 2 cut(s) 244, 436
BstMWI GCNNNNNNNGC 2 cut(s) 77, 193
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 3 cut(s) 156, 199, 557
BsuRI GGCC 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 3 cut(s) 13, 40, 192
CfoI GCGC 2 cut(s) 11, 196
Cfr13I GGNCC 1 cut(s) 41
CviAII CATG 2 cut(s) 487, 574
DpnI GATC 2 cut(s) 246, 438
DpnII GATC 2 cut(s) 244, 436
DraI TTTAAA 1 cut(s) 57
Eam1104I CTCTTC 5 cut(s) 174, 279, 426, 522, 585
EarI CTCTTC 5 cut(s) 174, 279, 426, 522, 585
FaeI CATG 2 cut(s) 490, 577
FalI AAGNNNNNCTT 4 cut(s) 77, 109, 150, 182
FatI CATG 2 cut(s) 486, 573
FauNDI CATATG 1 cut(s) 346
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 3 cut(s) 145, 188, 546
Fsp4HI GCNGC 3 cut(s) 145, 188, 546
FspBI CTAG 1 cut(s) 605
FspI TGCGCA 1 cut(s) 10
GlaI GCGC 2 cut(s) 10, 195
GluI GCNGC 3 cut(s) 145, 188, 546
GsaI CCCAGC 1 cut(s) 618
HaeIII GGCC 1 cut(s) 42
HapII CCGG 1 cut(s) 68
HhaI GCGC 2 cut(s) 11, 196
Hin1II CATG 2 cut(s) 490, 577
Hin6I GCGC 2 cut(s) 9, 194
HinP1I GCGC 2 cut(s) 9, 194
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 6 cut(s) 30, 113, 431, 442, 577, 644
HpaII CCGG 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 426, 436, 441
Hpy188III TCNNGA 2 cut(s) 158, 326
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 3 cut(s) 397, 529, 567
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4V TGCA 2 cut(s) 187, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 193
Hsp92II CATG 2 cut(s) 490, 577
HspAI GCGC 2 cut(s) 9, 194
Kzo9I GATC 2 cut(s) 244, 436
LguI GCTCTTC 1 cut(s) 426
LpnPI CCDG 7 cut(s) 24, 40, 81, 220, 339, 363, 628
Lsp1109I GCAGC 3 cut(s) 156, 199, 557
MaeI CTAG 1 cut(s) 605
MaeIII GTNAC 1 cut(s) 380
MalI GATC 2 cut(s) 246, 438
MboI GATC 2 cut(s) 244, 436
MboII GAAGA 7 cut(s) 191, 296, 413, 536, 539, 572, 653
MfeI CAATTG 1 cut(s) 650
MluCI AATT 3 cut(s) 52, 339, 650
MlyI GAGTC 3 cut(s) 39, 122, 571
MnlI CCTC 4 cut(s) 100, 233, 363, 388
MseI TTAA 3 cut(s) 56, 63, 354
MspI CCGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 650
MwoI GCNNNNNNNGC 2 cut(s) 77, 193
NdeI CATATG 1 cut(s) 346
NdeII GATC 2 cut(s) 244, 436
NlaIII CATG 2 cut(s) 490, 577
NsbI TGCGCA 1 cut(s) 10
PciSI GCTCTTC 1 cut(s) 426
PfeI GAWTC 3 cut(s) 431, 442, 644
PkrI GCNGC 3 cut(s) 146, 189, 547
PleI GAGTC 3 cut(s) 38, 121, 571
PpsI GAGTC 3 cut(s) 38, 121, 571
PspFI CCCAGC 1 cut(s) 614
PspPI GGNCC 1 cut(s) 41
SalI GTCGAC 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 3 cut(s) 56, 63, 354
SatI GCNGC 3 cut(s) 145, 188, 546
Sau3AI GATC 2 cut(s) 244, 436
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 3 cut(s) 39, 122, 571
SetI ASST 9 cut(s) 17, 40, 63, 111, 129, 149, 192, 225, 620
SfcI CTRYAG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
Sse9I AATT 3 cut(s) 52, 339, 650
SspMI CTAG 1 cut(s) 605
TaaI ACNGT 1 cut(s) 512
TaqI TCGA 3 cut(s) 231, 252, 387
TasI AATT 3 cut(s) 52, 339, 650
TfiI GAWTC 3 cut(s) 431, 442, 644
Tru1I TTAA 3 cut(s) 56, 63, 354
Tru9I TTAA 3 cut(s) 56, 63, 354
TscAI CASTG 1 cut(s) 382
TseI GCWGC 3 cut(s) 144, 187, 545
TspDTI ATGAA 4 cut(s) 284, 345, 475, 537
TspRI CASTG 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.