Rmu_sc0002556.1_g000015

Calcineurin B-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002556.1
Physical Location & Seq
Forward (+)
56076 .. 58290
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002556.1_g000015.1.cds

Sequence Viewer

Length: 678 bp
atgggttgcgcaagctcaaacaaagccagagtcaaagctggcccaagtgccaatttaaagcttaatccggctattcttgcttgtaagacacccttttctgtgagtgaggtagagtctttgtatgagctatataagaaaataagcagctctgtagttcaagatgggcttatacacaaggaagagttgcagcttgcgctttttcaaaacagcagtaagcagaacctctttttcgacaggatatttgatcttttcgatgtcaataacaatgggcgtattgagtttgaagagtttgttcatacattgagtgttttccacccaagaactcctgatgaagtcaaaattacatgtaagaaccagactcgtgatgatgcttttaagttatatgatttgaggcacactggttacatcgagcgtgaggagttgaaggagatggtggtggctcttctgaacgaatctgatctgattcttgcagatgatattgttgaaatgattgtgaataagacattcatggaagcagatggaaaagcagacggtaggattgatgaagaagagtggaaggaatacgtagcaaaaaacccttctctactgaaaaacatgactcttccatacttgatggacatgtctctagcatttcccagctttgtgctgaatactcaagcagaagaatctcaattgtag

Protein Analysis

225

Amino Acids

25.67

Weight (kDa)

4.86

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018517)

Species Orthologous Gene IDs
prunus_persica Prupe.2G188700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359511 RchiOBHm_Chr1g0359521
rosa_multiflora Rmu_sc0002556.1_g000015
rosa_roxburghii Rroxscaffold_4G00296920
rosa_rugosa Rorug01G0272000
rosa_samantha Rh1BG251400 Rh1DG280500
rosa_wichuraiana Rw1G025360 Rw1G025370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 10
AflIII ACRYGT 2 cut(s) 344, 618
AgsI TTSAA 5 cut(s) 158, 203, 284, 424, 485
AluBI AGCT 7 cut(s) 15, 38, 61, 127, 147, 190, 639
AluI AGCT 7 cut(s) 15, 38, 61, 127, 147, 190, 639
Alw26I GTCTC 1 cut(s) 627
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 144, 187
ArsI GACNNNNNNTTYG 4 cut(s) 15, 47, 224, 256
AspLEI GCGC 2 cut(s) 11, 196
AspS9I GGNCC 1 cut(s) 41
BauI CACGAG 1 cut(s) 360
BbvI GCAGC 2 cut(s) 156, 199
BccI CCATC 4 cut(s) 155, 424, 512, 607
BcoDI GTCTC 1 cut(s) 627
BfaI CTAG 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 2 cut(s) 145, 188
BlsI GCNGC 2 cut(s) 146, 189
BmgT120I GGNCC 1 cut(s) 41
BmsI GCATC 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 639
BsaAI YACGTR 1 cut(s) 565
Bse1I ACTGG 1 cut(s) 403
BseNI ACTGG 1 cut(s) 403
BseRI GAGGAG 1 cut(s) 431
BseXI GCAGC 2 cut(s) 156, 199
BseYI CCCAGC 1 cut(s) 635
BshFI GGCC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 627
BsnI GGCC 1 cut(s) 42
Bsp143I GATC 2 cut(s) 244, 457
BspANI GGCC 1 cut(s) 42
BspQI GCTCTTC 1 cut(s) 447
BsrI ACTGG 1 cut(s) 403
BssMI GATC 2 cut(s) 244, 457
BssSI CACGAG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 5 cut(s) 174, 279, 447, 543, 606
BstBAI YACGTR 1 cut(s) 565
BstC8I GCNNGC 3 cut(s) 13, 40, 192
BstHHI GCGC 2 cut(s) 11, 196
BstKTI GATC 2 cut(s) 247, 460
BstMAI GTCTC 1 cut(s) 627
BstMBI GATC 2 cut(s) 244, 457
BstMWI GCNNNNNNNGC 2 cut(s) 77, 193
BstNSI RCATGY 2 cut(s) 348, 622
BstSFI CTRYAG 1 cut(s) 150
BstSNI TACGTA 1 cut(s) 565
BstV1I GCAGC 2 cut(s) 156, 199
BsuRI GGCC 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 3 cut(s) 13, 40, 192
CfoI GCGC 2 cut(s) 11, 196
Cfr13I GGNCC 1 cut(s) 41
CviAII CATG 4 cut(s) 345, 508, 595, 619
DpnI GATC 2 cut(s) 246, 459
DpnII GATC 2 cut(s) 244, 457
DraI TTTAAA 1 cut(s) 57
Eam1104I CTCTTC 5 cut(s) 174, 279, 447, 543, 606
EarI CTCTTC 5 cut(s) 174, 279, 447, 543, 606
Eco105I TACGTA 1 cut(s) 565
FaeI CATG 4 cut(s) 348, 511, 598, 622
FalI AAGNNNNNCTT 4 cut(s) 77, 109, 150, 182
FatI CATG 4 cut(s) 344, 507, 594, 618
Fnu4HI GCNGC 2 cut(s) 145, 188
Fsp4HI GCNGC 2 cut(s) 145, 188
FspBI CTAG 1 cut(s) 626
FspI TGCGCA 1 cut(s) 10
GlaI GCGC 2 cut(s) 10, 195
GluI GCNGC 2 cut(s) 145, 188
GsaI CCCAGC 1 cut(s) 639
HaeIII GGCC 1 cut(s) 42
HapII CCGG 1 cut(s) 68
HhaI GCGC 2 cut(s) 11, 196
Hin1II CATG 4 cut(s) 348, 511, 598, 622
Hin6I GCGC 2 cut(s) 9, 194
HinP1I GCGC 2 cut(s) 9, 194
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 7 cut(s) 30, 113, 358, 452, 463, 598, 665
HpaII CCGG 1 cut(s) 68
Hpy188I TCNGA 3 cut(s) 447, 457, 462
Hpy188III TCNNGA 3 cut(s) 158, 326, 362
HpyAV CCTTC 3 cut(s) 418, 550, 588
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4IV ACGT 1 cut(s) 564
HpyCH4V TGCA 2 cut(s) 187, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 193
HpySE526I ACGT 1 cut(s) 564
Hsp92II CATG 4 cut(s) 348, 511, 598, 622
HspAI GCGC 2 cut(s) 9, 194
Kzo9I GATC 2 cut(s) 244, 457
LguI GCTCTTC 1 cut(s) 447
LpnPI CCDG 8 cut(s) 24, 40, 81, 220, 339, 368, 384, 649
Lsp1109I GCAGC 2 cut(s) 156, 199
LweI GCATC 1 cut(s) 358
MaeI CTAG 1 cut(s) 626
MaeII ACGT 1 cut(s) 564
MaeIII GTNAC 1 cut(s) 401
MalI GATC 2 cut(s) 246, 459
MboI GATC 2 cut(s) 244, 457
MboII GAAGA 7 cut(s) 191, 296, 434, 557, 560, 593, 674
MfeI CAATTG 1 cut(s) 671
MluCI AATT 3 cut(s) 52, 339, 671
MlyI GAGTC 4 cut(s) 39, 122, 352, 592
MnlI CCTC 4 cut(s) 100, 233, 384, 409
MseI TTAA 3 cut(s) 56, 63, 375
MspI CCGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 671
MwoI GCNNNNNNNGC 2 cut(s) 77, 193
NdeII GATC 2 cut(s) 244, 457
NlaIII CATG 4 cut(s) 348, 511, 598, 622
NsbI TGCGCA 1 cut(s) 10
NspI RCATGY 2 cut(s) 348, 622
PciI ACATGT 2 cut(s) 344, 618
PciSI GCTCTTC 1 cut(s) 447
PfeI GAWTC 3 cut(s) 452, 463, 665
PkrI GCNGC 2 cut(s) 146, 189
PleI GAGTC 4 cut(s) 38, 121, 352, 592
PpsI GAGTC 4 cut(s) 38, 121, 352, 592
Ppu21I YACGTR 1 cut(s) 565
PscI ACATGT 2 cut(s) 344, 618
PspFI CCCAGC 1 cut(s) 635
PspPI GGNCC 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 447
SaqAI TTAA 3 cut(s) 56, 63, 375
SatI GCNGC 2 cut(s) 145, 188
Sau3AI GATC 2 cut(s) 244, 457
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 4 cut(s) 39, 122, 352, 592
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 654
SmoI CTYRAG 1 cut(s) 654
SnaBI TACGTA 1 cut(s) 565
Sse9I AATT 3 cut(s) 52, 339, 671
SspMI CTAG 1 cut(s) 626
TaaI ACNGT 1 cut(s) 533
TaiI ACGT 1 cut(s) 567
TaqI TCGA 3 cut(s) 231, 252, 408
TasI AATT 3 cut(s) 52, 339, 671
TfiI GAWTC 3 cut(s) 452, 463, 665
Tru1I TTAA 3 cut(s) 56, 63, 375
Tru9I TTAA 3 cut(s) 56, 63, 375
TscAI CASTG 1 cut(s) 403
TseI GCWGC 2 cut(s) 144, 187
TspDTI ATGAA 4 cut(s) 284, 345, 496, 558
TspRI CASTG 1 cut(s) 403
XceI RCATGY 2 cut(s) 348, 622
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.