RchiOBHm_Chr1g0360321

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0018944
Physical Location & Seq
Forward (+)
52133573 .. 52134924
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58532

Sequence Viewer

Length: 348 bp
ATGGGGAGAAAGAAGAAGTTCATCGACAAGAAAAAGGCTACTTTCCAATTAATCTCCCGAGATTCCTCCGATCCCAACGACGATGACTCACTCGGCGACGACCGAGTCTTCATCCAAGTCTTCGTCAACCCAACGACGATCTTGATTCGATCTTGGCCGACGCGCCTGAGGACAAAGAAGCTGACAACTATTACGACCACACTTTCAAAAACTCTGTGGCGGTGGCTTAGCCCCTGCCGGAGAAACAACTTTGATAATTTAGGTCCATGTAAAAAGAAGAATGACCAAGGAGGAGAAGCTGGCATTAATGAAAGCAGGGAGGGAGGAAAGAAGGAAGTACATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

115

Amino Acids

13.15

Weight (kDa)

10.01

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0360321
rosa_laevigata RLG00000001332 RLG00000031214
rosa_roxburghii Rroxscaffold_2G00107350 Rroxscaffold_6G00419100
rosa_samantha Rh2BG059700 Rh2CG061600 Rh4CG139500 Rh5AG282300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AccII CGCG 1 cut(s) 163
AciI CCGC 1 cut(s) 220
AclWI GGATC 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 155
AfaI GTAC 1 cut(s) 339
AgsI TTSAA 1 cut(s) 207
AluBI AGCT 2 cut(s) 181, 299
AluI AGCT 2 cut(s) 181, 299
AlwI GGATC 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 1 cut(s) 155
AseI ATTAAT 2 cut(s) 50, 306
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 263
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 1 cut(s) 263
AxyI CCTNAGG 1 cut(s) 167
BbsI GAAGAC 2 cut(s) 100, 112
BfaI CTAG 1 cut(s) 346
BlpI GCTNAGC 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 263
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 263
BpiI GAAGAC 2 cut(s) 100, 112
Bpu1102I GCTNAGC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 286
Bse21I CCTNAGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 238
BsnI GGCC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 57
Bsp143I GATC 3 cut(s) 70, 138, 149
Bsp1720I GCTNAGC 1 cut(s) 227
BspACI CCGC 1 cut(s) 220
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 159
BspFNI CGCG 1 cut(s) 163
BspPI GGATC 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 3 cut(s) 70, 138, 149
BssT1I CCWWGG 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 2 cut(s) 167, 227
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 163
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 3 cut(s) 73, 141, 152
BstMBI GATC 3 cut(s) 70, 138, 149
BstMCI CGRYCG 1 cut(s) 103
BstUI CGCG 1 cut(s) 163
BstV2I GAAGAC 2 cut(s) 100, 112
Bsu36I CCTNAGG 1 cut(s) 167
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 338
CviAII CATG 2 cut(s) 267, 341
CviJI RGCY 7 cut(s) 38, 157, 181, 226, 231, 299, 345
CviKI_1 RGCY 7 cut(s) 38, 157, 181, 226, 231, 299, 345
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 167, 227
DpnI GATC 3 cut(s) 72, 140, 151
DpnII GATC 3 cut(s) 70, 138, 149
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 263
Eco81I CCTNAGG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 270, 344
FaiI YATR 2 cut(s) 268, 342
FatI CATG 2 cut(s) 266, 340
FokI GGATG 1 cut(s) 98
FspBI CTAG 1 cut(s) 346
GlaI GCGC 1 cut(s) 164
HaeIII GGCC 1 cut(s) 157
HapII CCGG 1 cut(s) 238
HgaI GACGC 1 cut(s) 169
HhaI GCGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 270, 344
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 4 cut(s) 62, 86, 105, 145
HpaII CCGG 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 57, 142
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 4 cut(s) 83, 101, 139, 163
HpyAV CCTTC 1 cut(s) 325
HpyF3I CTNAG 2 cut(s) 167, 227
Hsp92II CATG 2 cut(s) 270, 344
HspAI GCGC 1 cut(s) 163
Kzo9I GATC 3 cut(s) 70, 138, 149
LpnPI CCDG 5 cut(s) 179, 247, 251, 285, 301
MaeI CTAG 1 cut(s) 346
MalI GATC 3 cut(s) 72, 140, 151
MboI GATC 3 cut(s) 70, 138, 149
MboII GAAGA 4 cut(s) 25, 100, 112, 289
MluCI AATT 2 cut(s) 47, 256
MlyI GAGTC 2 cut(s) 80, 114
MnlI CCTC 5 cut(s) 76, 162, 284, 313, 317
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 2 cut(s) 50, 306
MspI CCGG 1 cut(s) 238
MvnI CGCG 1 cut(s) 163
NdeII GATC 3 cut(s) 70, 138, 149
NlaIII CATG 2 cut(s) 270, 344
NmeAIII GCCGAG 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 62, 145
PflFI GACNNNGTC 1 cut(s) 104
PleI GAGTC 2 cut(s) 80, 113
PpsI GAGTC 2 cut(s) 80, 113
PshBI ATTAAT 2 cut(s) 50, 306
PspPI GGNCC 1 cut(s) 263
PsyI GACNNNGTC 1 cut(s) 104
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 50, 306
Sau3AI GATC 3 cut(s) 70, 138, 149
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 2 cut(s) 80, 114
SetI ASST 3 cut(s) 183, 265, 301
SinI GGWCC 1 cut(s) 263
Sse9I AATT 2 cut(s) 47, 256
SsiI CCGC 1 cut(s) 220
SspMI CTAG 1 cut(s) 346
StyI CCWWGG 1 cut(s) 286
TaqI TCGA 2 cut(s) 24, 148
TaqII GACCGA 1 cut(s) 117
TasI AATT 2 cut(s) 47, 256
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 2 cut(s) 62, 145
Tru1I TTAA 2 cut(s) 50, 306
Tru9I TTAA 2 cut(s) 50, 306
TspDTI ATGAA 3 cut(s) 10, 100, 324
Tth111I GACNNNGTC 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 263
VspI ATTAAT 2 cut(s) 50, 306
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.