RLG00000031214

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018944
Physical Location & Seq
Forward (+)
3030293 .. 3031416
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031214

Sequence Viewer

Length: 429 bp
ATGGGGAGAAAGAAGAAGTTCGTCGACAAGAAAAAGGCTACTTTCCAATTAATCTCCCAAGATTCCTCCGATCCCAACGACGACGACTCACCCGACGGTGACCGAGTCTTCATCCAAGTCTCCGGCAGCCCAACGACGATCCCGATTCAATCTTGGCCGATGCGCCTGAGGACGAAGAAGGTGACAACTATTACGACCACGCTTTCGAAAACTCTGTGGCGGTGGCTCAGCCCCTGCCGGAGAAACAACTTTGATAATTTAGAGTTCTACAAGCATCGTCATGGCTTTGAACTTTGCCATTTGAGGGAGGCTCGAGCAATAAGCATAAAGAACACAAGTATGCCACTTGCTGCAAAGAGCAAAGTTCAAGTAAATTTTACATTTAAGATGAAGACTTCGTTGCAACTTGATCATGAGACATTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

143

Amino Acids

16.52

Weight (kDa)

10.01

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0360321
rosa_laevigata RLG00000001332 RLG00000031214
rosa_roxburghii Rroxscaffold_2G00107350 Rroxscaffold_6G00419100
rosa_samantha Rh2BG059700 Rh2CG061600 Rh4CG139500 Rh5AG282300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AciI CCGC 1 cut(s) 220
AclWI GGATC 2 cut(s) 65, 133
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 1 cut(s) 373
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 3 cut(s) 149, 290, 368
Alw26I GTCTC 2 cut(s) 124, 410
AlwI GGATC 2 cut(s) 65, 133
AlwNI CAGNNNCTG 1 cut(s) 234
Ama87I CYCGRG 1 cut(s) 312
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 126, 350
ApoI RAATTY 1 cut(s) 373
ArsI GACNNNNNNTTYG 2 cut(s) 187, 219
AseI ATTAAT 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 165
AsuHPI GGTGA 3 cut(s) 81, 110, 193
AsuII TTCGAA 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 312
AxyI CCTNAGG 1 cut(s) 167
BbsI GAAGAC 2 cut(s) 100, 398
BbvI GCAGC 2 cut(s) 138, 337
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 2 cut(s) 124, 410
BisI GCNGC 2 cut(s) 127, 351
BlpI GCTNAGC 1 cut(s) 227
BlsI GCNGC 2 cut(s) 128, 352
BmeT110I CYCGRG 1 cut(s) 312
BmsI GCATC 2 cut(s) 150, 283
BpiI GAAGAC 2 cut(s) 100, 398
BplI GAGNNNNNCTC 2 cut(s) 295, 327
Bpu1102I GCTNAGC 1 cut(s) 227
Bpu14I TTCGAA 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse21I CCTNAGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 2 cut(s) 158, 241
BseXI GCAGC 2 cut(s) 138, 337
BshFI GGCC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 312
BsiSI CCGG 2 cut(s) 123, 238
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 2 cut(s) 124, 410
BsnI GGCC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 312
Bsp119I TTCGAA 1 cut(s) 206
Bsp143I GATC 3 cut(s) 70, 138, 409
Bsp1720I GCTNAGC 1 cut(s) 227
BspACI CCGC 1 cut(s) 220
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 2 cut(s) 159, 240
BspHI TCATGA 1 cut(s) 412
BspPI GGATC 2 cut(s) 65, 133
BspT104I TTCGAA 1 cut(s) 206
BssMI GATC 3 cut(s) 70, 138, 409
Bst4CI ACNGT 1 cut(s) 98
BstBI TTCGAA 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 167, 227
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 3 cut(s) 73, 141, 412
BstMAI GTCTC 2 cut(s) 124, 410
BstMBI GATC 3 cut(s) 70, 138, 409
BstPI GGTNACC 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 138, 337
BstV2I GAAGAC 2 cut(s) 100, 398
Bsu36I CCTNAGG 1 cut(s) 167
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 234
CciI TCATGA 1 cut(s) 412
CfoI GCGC 1 cut(s) 165
CviAII CATG 2 cut(s) 281, 413
CviJI RGCY 7 cut(s) 38, 129, 157, 226, 231, 285, 311
CviKI_1 RGCY 7 cut(s) 38, 129, 157, 226, 231, 285, 311
DdeI CTNAG 2 cut(s) 167, 227
DpnI GATC 3 cut(s) 72, 140, 411
DpnII GATC 3 cut(s) 70, 138, 409
EaeI YGGCCR 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 312
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
FaeI CATG 2 cut(s) 284, 416
FaiI YATR 4 cut(s) 282, 326, 341, 414
FatI CATG 2 cut(s) 280, 412
FbaI TGATCA 1 cut(s) 409
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 127, 351
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 127, 351
GlaI GCGC 1 cut(s) 164
GluI GCNGC 2 cut(s) 127, 351
HaeIII GGCC 1 cut(s) 157
HapII CCGG 2 cut(s) 123, 238
HhaI GCGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 284, 416
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 4 cut(s) 62, 86, 105, 145
HpaII CCGG 2 cut(s) 123, 238
HphI GGTGA 3 cut(s) 81, 110, 193
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 142, 413
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 5 cut(s) 26, 83, 86, 98, 139
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 2 cut(s) 353, 403
HpyF3I CTNAG 2 cut(s) 167, 227
Hsp92II CATG 2 cut(s) 284, 416
HspAI GCGC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 3 cut(s) 70, 138, 409
LpnPI CCDG 4 cut(s) 136, 179, 247, 251
Lsp1109I GCAGC 2 cut(s) 138, 337
LweI GCATC 2 cut(s) 150, 283
MaeIII GTNAC 2 cut(s) 98, 181
MalI GATC 3 cut(s) 72, 140, 411
MboI GATC 3 cut(s) 70, 138, 409
MboII GAAGA 4 cut(s) 25, 100, 187, 403
MluCI AATT 3 cut(s) 47, 256, 373
MlyI GAGTC 2 cut(s) 80, 114
MnlI CCTC 4 cut(s) 76, 162, 297, 301
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 2 cut(s) 50, 384
MslI CAYNNNNRTG 2 cut(s) 279, 338
MspI CCGG 2 cut(s) 123, 238
NdeII GATC 3 cut(s) 70, 138, 409
NlaIII CATG 2 cut(s) 284, 416
NmuCI GTSAC 2 cut(s) 98, 181
NspV TTCGAA 1 cut(s) 206
PaeR7I CTCGAG 1 cut(s) 312
PagI TCATGA 1 cut(s) 412
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 140
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 62, 145
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 2 cut(s) 128, 352
PleI GAGTC 2 cut(s) 80, 113
PpsI GAGTC 2 cut(s) 80, 113
PshBI ATTAAT 1 cut(s) 50
PspEI GGTNACC 1 cut(s) 98
PspXI VCTCGAGB 1 cut(s) 312
PstNI CAGNNNCTG 1 cut(s) 234
PsyI GACNNNGTC 1 cut(s) 104
RseI CAYNNNNRTG 2 cut(s) 279, 338
SalI GTCGAC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 50, 384
SatI GCNGC 2 cut(s) 127, 351
Sau3AI GATC 3 cut(s) 70, 138, 409
SchI GAGTC 2 cut(s) 80, 114
SetI ASST 1 cut(s) 183
SfaNI GCATC 2 cut(s) 150, 283
Sfr274I CTCGAG 1 cut(s) 312
SfuI TTCGAA 1 cut(s) 206
SlaI CTCGAG 1 cut(s) 312
SmiMI CAYNNNNRTG 2 cut(s) 279, 338
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
Sse9I AATT 3 cut(s) 47, 256, 373
SsiI CCGC 1 cut(s) 220
TaaI ACNGT 1 cut(s) 98
TaqI TCGA 3 cut(s) 24, 206, 313
TaqII GACCGA 1 cut(s) 117
TasI AATT 3 cut(s) 47, 256, 373
TfiI GAWTC 2 cut(s) 62, 145
Tru1I TTAA 2 cut(s) 50, 384
Tru9I TTAA 2 cut(s) 50, 384
TseFI GTSAC 2 cut(s) 98, 181
TseI GCWGC 2 cut(s) 126, 350
Tsp45I GTSAC 2 cut(s) 98, 181
TspDTI ATGAA 2 cut(s) 100, 404
Tth111I GACNNNGTC 1 cut(s) 104
VspI ATTAAT 1 cut(s) 50
XapI RAATTY 1 cut(s) 373
XhoI CTCGAG 1 cut(s) 312
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.