Rroxscaffold_2G00107350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018944
Physical Location & Seq
Forward (+)
31208802 .. 31213049
4248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00107350.1

Sequence Viewer

Length: 573 bp
ATGGCCCCTTCGACACCGCCGACGGCGTCTACGACGTCACCTGGTCCGAATCTCACAACTCCCTACTCATCGCCTCCATCACCAAGGCCTCCGTCAAGCTCTACGACCTACCTCCAACCTCCTCCGCTCCTTCTTCGGTTCTACTCCTACTTCATGTATGGTTCTCTCCACCCTCAATATCTATTAGCATCTGTTCACAAATTCCTAGCAAACCTTCTCCGATTCATTATGGGGAGAAAGAAGAAGTGCATCGACAAGAAAAAGGCTACTTTCCAATTAATCTCCCGAGATTCCTCCGATCCCAACGATGACGACTCACCGGCGGCGACCGAGTCTTCATCCAAGTCTTCGGCAACCCAACGACGATCCCGATTCGATCTTGGACGACACGCCCGAGGACGAAGAAGAGATCCATCATTGCTTAAATTCCGCAAATGTCTTGGTTATATGAGCTCTCTATTTGCAGAGATCCAAGCTATTGTAATTAGAAAATTTTTGGTTCAGCGTCTTCGATTCCACTTGCGACAGATGCGTTTGCAAAGTGGTTATGGCTCTGCCAAAGCATTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.48

Weight (kDa)

10.77

Isoelectric Point (pI)

77.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0360321
rosa_laevigata RLG00000001332 RLG00000031214
rosa_roxburghii Rroxscaffold_2G00107350 Rroxscaffold_6G00419100
rosa_samantha Rh2BG059700 Rh2CG061600 Rh4CG139500 Rh5AG282300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccBSI CCGCTC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 29
AciI CCGC 4 cut(s) 17, 125, 323, 430
AclWI GGATC 4 cut(s) 293, 360, 404, 463
AcsI RAATTY 3 cut(s) 200, 425, 491
AcyI GRCGYC 2 cut(s) 26, 35
AgsI TTSAA 1 cut(s) 568
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 3 cut(s) 99, 453, 476
AluI AGCT 3 cut(s) 99, 453, 476
Alw21I GWGCWC 1 cut(s) 455
AlwI GGATC 4 cut(s) 293, 360, 404, 463
Ama87I CYCGRG 2 cut(s) 285, 393
AoxI GGCC 2 cut(s) 3, 86
ApoI RAATTY 3 cut(s) 200, 425, 491
AseI ATTAAT 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 4, 44
AsuHPI GGTGA 3 cut(s) 30, 72, 309
AvaI CYCGRG 2 cut(s) 285, 393
AvaII GGWCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 455
BbsI GAAGAC 3 cut(s) 327, 339, 500
Bbv12I GWGCWC 1 cut(s) 455
BccI CCATC 2 cut(s) 85, 421
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 42
BfaI CTAG 1 cut(s) 206
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 2 cut(s) 285, 393
BmgT120I GGNCC 2 cut(s) 4, 44
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 3 cut(s) 197, 258, 519
BpiI GAAGAC 3 cut(s) 327, 339, 500
BsaHI GRCGYC 2 cut(s) 26, 35
BsaJI CCNNGG 2 cut(s) 83, 394
Bse118I RCCGGY 1 cut(s) 319
Bse3DI GCAATG 1 cut(s) 416
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 83, 394
BseGI GGATG 1 cut(s) 338
BseMI GCAATG 1 cut(s) 416
BseRI GAGGAG 1 cut(s) 111
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 2 cut(s) 5, 88
BsiEI CGRYCG 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 455
BsiHKCI CYCGRG 2 cut(s) 285, 393
BsiSI CCGG 1 cut(s) 320
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 2 cut(s) 5, 88
BsoBI CYCGRG 2 cut(s) 285, 393
Bsp1286I GDGCHC 1 cut(s) 455
Bsp143I GATC 5 cut(s) 298, 365, 376, 409, 468
BspACI CCGC 4 cut(s) 17, 125, 323, 430
BspANI GGCC 2 cut(s) 5, 88
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 4 cut(s) 293, 360, 404, 463
BsrBI CCGCTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 416
BsrFI RCCGGY 1 cut(s) 319
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 2 cut(s) 83, 394
BssMI GATC 5 cut(s) 298, 365, 376, 409, 468
BssNI GRCGYC 2 cut(s) 26, 35
BssT1I CCWWGG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 400
BstACI GRCGYC 2 cut(s) 26, 35
BstF5I GGATG 1 cut(s) 338
BstKTI GATC 5 cut(s) 301, 368, 379, 412, 471
BstMBI GATC 5 cut(s) 298, 365, 376, 409, 468
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 1 cut(s) 529
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstV2I GAAGAC 3 cut(s) 327, 339, 500
BstX2I RGATCY 2 cut(s) 409, 468
BstYI RGATCY 2 cut(s) 409, 468
BsuRI GGCC 2 cut(s) 5, 88
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 338
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 4, 44
CseI GACGC 2 cut(s) 15, 494
CsiI ACCWGGT 1 cut(s) 40
CviAII CATG 1 cut(s) 154
CviJI RGCY 7 cut(s) 5, 88, 99, 266, 453, 476, 552
CviKI_1 RGCY 7 cut(s) 5, 88, 99, 266, 453, 476, 552
DpnI GATC 5 cut(s) 300, 367, 378, 411, 470
DpnII GATC 5 cut(s) 298, 365, 376, 409, 468
Eam1104I CTCTTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 400
Ecl136II GAGCTC 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 83
Eco147I AGGCCT 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 455
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 453
Eco88I CYCGRG 2 cut(s) 285, 393
EcoICRI GAGCTC 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 455
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 1 cut(s) 157
FaiI YATR 6 cut(s) 155, 159, 230, 447, 449, 549
FatI CATG 1 cut(s) 153
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 1 cut(s) 325
FriOI GRGCYC 1 cut(s) 455
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 1 cut(s) 206
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 2 cut(s) 5, 88
HapII CCGG 1 cut(s) 320
HgaI GACGC 2 cut(s) 15, 494
Hin1I GRCGYC 2 cut(s) 26, 35
Hin1II CATG 1 cut(s) 157
HinfI GANTC 7 cut(s) 49, 222, 290, 314, 332, 372, 513
HpaII CCGG 1 cut(s) 320
HphI GGTGA 3 cut(s) 30, 72, 309
Hpy166II GTNNAC 2 cut(s) 30, 196
Hpy188I TCNGA 3 cut(s) 48, 221, 298
Hpy188III TCNNGA 2 cut(s) 285, 369
Hpy8I GTNNAC 2 cut(s) 30, 196
Hpy99I CGWCG 3 cut(s) 25, 37, 366
HpyAV CCTTC 3 cut(s) 18, 140, 224
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 3 cut(s) 249, 464, 538
HpyF10VI GCNNNNNNNGC 1 cut(s) 529
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 2 cut(s) 26, 35
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 5 cut(s) 298, 365, 376, 409, 468
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 3 cut(s) 27, 54, 333
LweI GCATC 3 cut(s) 197, 258, 519
MabI ACCWGGT 1 cut(s) 40
MaeI CTAG 1 cut(s) 206
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 36
MalI GATC 5 cut(s) 300, 367, 378, 411, 470
MbiI CCGCTC 1 cut(s) 127
MboI GATC 5 cut(s) 298, 365, 376, 409, 468
MboII GAAGA 7 cut(s) 125, 253, 327, 339, 414, 417, 500
MflI RGATCY 2 cut(s) 409, 468
MhlI GDGCHC 1 cut(s) 455
MluCI AATT 5 cut(s) 200, 275, 425, 483, 491
MlyI GAGTC 2 cut(s) 308, 341
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 8 cut(s) 84, 99, 122, 129, 132, 183, 304, 389
MseI TTAA 2 cut(s) 278, 423
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 529
NdeII GATC 5 cut(s) 298, 365, 376, 409, 468
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 36
PceI AGGCCT 1 cut(s) 88
PcsI WCGNNNNNNNCGW 4 cut(s) 17, 29, 367, 391
PctI GAATGC 1 cut(s) 563
PfeI GAWTC 5 cut(s) 49, 222, 290, 372, 513
PflFI GACNNNGTC 2 cut(s) 25, 331
PkrI GCNGC 1 cut(s) 325
PleI GAGTC 2 cut(s) 308, 340
PpsI GAGTC 2 cut(s) 308, 340
PshBI ATTAAT 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 4, 44
PsuI RGATCY 2 cut(s) 409, 468
PsyI GACNNNGTC 2 cut(s) 25, 331
SacI GAGCTC 1 cut(s) 455
SaqAI TTAA 2 cut(s) 278, 423
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 5 cut(s) 298, 365, 376, 409, 468
Sau96I GGNCC 2 cut(s) 4, 44
SchI GAGTC 2 cut(s) 308, 341
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 455
SetI ASST 9 cut(s) 38, 43, 101, 110, 114, 121, 216, 455, 478
SexAI ACCWGGT 1 cut(s) 40
SfaNI GCATC 3 cut(s) 197, 258, 519
SgrAI CRCCGGYG 1 cut(s) 319
SinI GGWCC 1 cut(s) 44
Sse9I AATT 5 cut(s) 200, 275, 425, 483, 491
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 4 cut(s) 17, 125, 323, 430
SspMI CTAG 1 cut(s) 206
SstI GAGCTC 1 cut(s) 455
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 1 cut(s) 83
TaiI ACGT 1 cut(s) 38
TaqI TCGA 4 cut(s) 11, 252, 375, 511
TaqII GACCGA 1 cut(s) 344
TasI AATT 5 cut(s) 200, 275, 425, 483, 491
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 5 cut(s) 49, 222, 290, 372, 513
Tru1I TTAA 2 cut(s) 278, 423
Tru9I TTAA 2 cut(s) 278, 423
TseFI GTSAC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 3 cut(s) 142, 214, 327
TspGWI ACGGA 1 cut(s) 81
Tth111I GACNNNGTC 2 cut(s) 25, 331
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 1 cut(s) 278
XapI RAATTY 3 cut(s) 200, 425, 491
XmiI GTMKAC 1 cut(s) 29
XspI CTAG 1 cut(s) 206
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.