Rh5AG282300

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018944
Physical Location & Seq
Forward (+)
38261879 .. 38262534
656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG282300.1

Sequence Viewer

Length: 276 bp
ATGGGGAGAAAGAAGAAGTTCATCGACAAGAAAAAGGCTACTTTCCAATTATTCTCTCGAGATTCCTCCGATCCCAACGACGACGACTCACCCGGTGGCGACCGAGTCTTCATCCAAGTCTCCGGCAACCCAACGACGATCCAGATTCGATCTTGGCCGACGCGCCTGAGGATGAAGAAGGTCCATGTAAAAAGAAGAATGACCAAGGAGAAGAAGCTGGCATTAGTGAAAGCAGGGAGGGAGGAAAGAGGGAAGTACATGGCTAGAGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

91

Amino Acids

10.52

Weight (kDa)

10.87

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0360321
rosa_laevigata RLG00000001332 RLG00000031214
rosa_roxburghii Rroxscaffold_2G00107350 Rroxscaffold_6G00419100
rosa_samantha Rh2BG059700 Rh2CG061600 Rh4CG139500 Rh5AG282300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 163
AclWI GGATC 2 cut(s) 65, 133
AcoI YGGCCR 1 cut(s) 155
AdeI CACNNNGTG 1 cut(s) 95
AfaI GTAC 1 cut(s) 257
AluBI AGCT 2 cut(s) 217, 269
AluI AGCT 2 cut(s) 217, 269
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 2 cut(s) 65, 133
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 181
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 81
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 1 cut(s) 181
AxyI CCTNAGG 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 256
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 264
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 204
Bse21I CCTNAGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 2 cut(s) 111, 177
BseMII CTCAG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 2 cut(s) 93, 123
BsmAI GTCTC 1 cut(s) 124
BsnI GGCC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 57
Bsp143I GATC 3 cut(s) 70, 138, 149
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 159
BspFNI CGCG 1 cut(s) 163
BspPI GGATC 2 cut(s) 65, 133
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 3 cut(s) 70, 138, 149
BssT1I CCWWGG 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 111, 177
BstFNI CGCG 1 cut(s) 163
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 3 cut(s) 73, 141, 152
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 3 cut(s) 70, 138, 149
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 91
BstUI CGCG 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 167
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 2 cut(s) 111, 177
Cac8I GCNNGC 1 cut(s) 219
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 185, 259
CviJI RGCY 5 cut(s) 38, 157, 217, 263, 269
CviKI_1 RGCY 5 cut(s) 38, 157, 217, 263, 269
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 1 cut(s) 167
DpnI GATC 3 cut(s) 72, 140, 151
DpnII GATC 3 cut(s) 70, 138, 149
DraIII CACNNNGTG 1 cut(s) 95
EaeI YGGCCR 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 181
Eco81I CCTNAGG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 188, 262
FaiI YATR 2 cut(s) 186, 260
FatI CATG 2 cut(s) 184, 258
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 2 cut(s) 98, 184
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 270
HaeIII GGCC 1 cut(s) 157
HapII CCGG 2 cut(s) 93, 123
HgaI GACGC 1 cut(s) 169
HhaI GCGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 188, 262
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 4 cut(s) 62, 86, 105, 145
HpaII CCGG 2 cut(s) 93, 123
HphI GGTGA 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 3 cut(s) 57, 59, 142
Hpy99I CGWCG 4 cut(s) 83, 86, 139, 163
HpyAV CCTTC 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 2 cut(s) 188, 262
HspAI GCGC 1 cut(s) 163
Kzo9I GATC 3 cut(s) 70, 138, 149
LpnPI CCDG 6 cut(s) 106, 136, 155, 179, 203, 219
Lsp1109I GCAGC 1 cut(s) 256
MaeI CTAG 1 cut(s) 264
MalI GATC 3 cut(s) 72, 140, 151
MboI GATC 3 cut(s) 70, 138, 149
MboII GAAGA 5 cut(s) 25, 100, 187, 207, 223
MluCI AATT 1 cut(s) 47
MlyI GAGTC 2 cut(s) 80, 114
MnlI CCTC 5 cut(s) 76, 162, 231, 235, 242
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 1 cut(s) 274
MspI CCGG 2 cut(s) 93, 123
MspR9I CCNGG 1 cut(s) 93
MvnI CGCG 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 1 cut(s) 93
NdeII GATC 3 cut(s) 70, 138, 149
NlaIII CATG 2 cut(s) 188, 262
PaeR7I CTCGAG 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 62, 145
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 2 cut(s) 80, 113
PpsI GAGTC 2 cut(s) 80, 113
PspPI GGNCC 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 104
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 274
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 3 cut(s) 70, 138, 149
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 2 cut(s) 80, 114
ScrFI CCNGG 1 cut(s) 93
SetI ASST 3 cut(s) 183, 219, 271
Sfr274I CTCGAG 1 cut(s) 57
SinI GGWCC 1 cut(s) 181
SlaI CTCGAG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 1 cut(s) 47
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 204
TaqI TCGA 3 cut(s) 24, 58, 148
TaqII GACCGA 1 cut(s) 117
TasI AATT 1 cut(s) 47
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 2 cut(s) 62, 145
Tru1I TTAA 1 cut(s) 274
Tru9I TTAA 1 cut(s) 274
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 3 cut(s) 10, 100, 188
Tth111I GACNNNGTC 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 181
XhoI CTCGAG 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.