Rh2CG061600

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018944
Physical Location & Seq
Forward (+)
5035347 .. 5035703
357 bp
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UTR
Exon/CDS
Intron
Rh2CG061600.1

Sequence Viewer

Length: 357 bp
ATGGGGAGAAAGAAGAAGTTCATCGACAAGAAGAAGGCTACTTTCCAATTAATCTCCCGAGATTCCTCCGATCCCAACGATGACGACTCACCCGGCGGCGACCGAGTCTTCATCCAAGTCTCTAGCAACCCAAAGACGATCCCGATTCGATCTTGGCCGACGCGCCTGAGGACGAAGAAGGTGACAACTATTACGACCACGCTTTCGAAAACTCTGTGGCGGTGGCTCAGCCCCTGCTGGAGAAACAACTTTGATAATTTAGGTGAGGAATCTGCATTTGCATTAAGAAATAATGCATCTGAAATGGATATAATAAGTAGAACAACTTTTGTAAATGTGCTGGATTGTTTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

118

Amino Acids

13.6

Weight (kDa)

9.69

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0360321
rosa_laevigata RLG00000001332 RLG00000031214
rosa_roxburghii Rroxscaffold_2G00107350 Rroxscaffold_6G00419100
rosa_samantha Rh2BG059700 Rh2CG061600 Rh4CG139500 Rh5AG282300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 163
AciI CCGC 2 cut(s) 96, 220
AclWI GGATC 2 cut(s) 65, 133
AcoI YGGCCR 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 2 cut(s) 65, 133
AlwNI CAGNNNCTG 1 cut(s) 234
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 187, 219
AseI ATTAAT 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 165
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 3 cut(s) 81, 193, 275
AsuII TTCGAA 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 57
AxyI CCTNAGG 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 100
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 123
BisI GCNGC 1 cut(s) 97
BlpI GCTNAGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 93
BmeT110I CYCGRG 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 305
BpiI GAAGAC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 259
Bpu1102I GCTNAGC 1 cut(s) 227
Bpu14I TTCGAA 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 93
Bse21I CCTNAGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 158, 241
Bsh1236I CGCG 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 124
BsnI GGCC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 206
Bsp143I GATC 3 cut(s) 70, 138, 149
Bsp1720I GCTNAGC 1 cut(s) 227
BspACI CCGC 2 cut(s) 96, 220
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 2 cut(s) 159, 240
BspFNI CGCG 1 cut(s) 163
BspPI GGATC 2 cut(s) 65, 133
BspT104I TTCGAA 1 cut(s) 206
BssMI GATC 3 cut(s) 70, 138, 149
BstBI TTCGAA 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 167, 227
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 163
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 3 cut(s) 73, 141, 152
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 3 cut(s) 70, 138, 149
BstMCI CGRYCG 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 91
BstUI CGCG 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 167
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 234
CfoI GCGC 1 cut(s) 165
CseI GACGC 1 cut(s) 169
CviJI RGCY 4 cut(s) 38, 157, 226, 231
CviKI_1 RGCY 4 cut(s) 38, 157, 226, 231
DdeI CTNAG 2 cut(s) 167, 227
DpnI GATC 3 cut(s) 72, 140, 151
DpnII GATC 3 cut(s) 70, 138, 149
EaeI YGGCCR 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 298
FaiI YATR 1 cut(s) 311
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 1 cut(s) 123
GlaI GCGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 259
HaeIII GGCC 1 cut(s) 157
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 169
HhaI GCGC 1 cut(s) 165
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 5 cut(s) 62, 86, 105, 145, 269
HpaII CCGG 1 cut(s) 93
HphI GGTGA 3 cut(s) 81, 193, 275
Hpy188I TCNGA 2 cut(s) 70, 301
Hpy188III TCNNGA 2 cut(s) 57, 142
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 28, 172
HpyCH4V TGCA 3 cut(s) 275, 281, 296
HpyF3I CTNAG 2 cut(s) 167, 227
HspAI GCGC 1 cut(s) 163
Kzo9I GATC 3 cut(s) 70, 138, 149
LpnPI CCDG 5 cut(s) 106, 179, 223, 247, 326
LweI GCATC 1 cut(s) 305
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 181
MalI GATC 3 cut(s) 72, 140, 151
MboI GATC 3 cut(s) 70, 138, 149
MboII GAAGA 4 cut(s) 25, 43, 100, 187
MluCI AATT 2 cut(s) 47, 256
MlyI GAGTC 2 cut(s) 80, 114
MnlI CCTC 3 cut(s) 76, 162, 259
Mph1103I ATGCAT 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 2 cut(s) 50, 284
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 93
MvnI CGCG 1 cut(s) 163
NciI CCSGG 1 cut(s) 93
NdeII GATC 3 cut(s) 70, 138, 149
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 298
NspV TTCGAA 1 cut(s) 206
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 3 cut(s) 62, 145, 269
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 2 cut(s) 80, 113
PpsI GAGTC 2 cut(s) 80, 113
PshBI ATTAAT 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 234
PsyI GACNNNGTC 1 cut(s) 104
SaqAI TTAA 2 cut(s) 50, 284
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 3 cut(s) 70, 138, 149
SchI GAGTC 2 cut(s) 80, 114
ScrFI CCNGG 1 cut(s) 93
SetI ASST 2 cut(s) 183, 265
SfaNI GCATC 1 cut(s) 305
SfuI TTCGAA 1 cut(s) 206
Sse9I AATT 2 cut(s) 47, 256
SsiI CCGC 2 cut(s) 96, 220
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 91
TaqI TCGA 3 cut(s) 24, 148, 206
TaqII GACCGA 1 cut(s) 117
TasI AATT 2 cut(s) 47, 256
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 3 cut(s) 62, 145, 269
Tru1I TTAA 2 cut(s) 50, 284
Tru9I TTAA 2 cut(s) 50, 284
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 10, 100
Tth111I GACNNNGTC 1 cut(s) 104
VspI ATTAAT 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 123
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.