Rroxscaffold_6G00419100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018944
Physical Location & Seq
Reverse (-)
40620593 .. 40621002
410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419100.1

Sequence Viewer

Length: 357 bp
ATGGCCCCTTTGACACCGCCGACGGCGTCTACGACGTCACCTGGTCCGAATCTCACAACTCCCTACTCATCGCCTCCATCACCAAGGCCTCCGTCAAGCTCTACGACCTACCTCCAACCTCCTCCGCTCCTTCTTCGGTTCTACTCCTACTTCATCAAACCTTCTCGATTCATTATGGGGAGAAAGAAGAAGTGCATCGACAAGAAAAAGGCTACTTTCCAATTAATCTCCCGAGATTCCTCCGATCCCAACGATGACGACTCACCGGCGGCGACCGAGTCTTCATCCAAGTCTTCGGCAACCCAACGACGATCCCGATTCGATCTTGGACGACACGCCCGAGGACGAAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.1

Weight (kDa)

10.78

Isoelectric Point (pI)

93.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0360321
rosa_laevigata RLG00000001332 RLG00000031214
rosa_roxburghii Rroxscaffold_2G00107350 Rroxscaffold_6G00419100
rosa_samantha Rh2BG059700 Rh2CG061600 Rh4CG139500 Rh5AG282300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccBSI CCGCTC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 29
AciI CCGC 3 cut(s) 17, 125, 269
AclWI GGATC 2 cut(s) 239, 306
AcyI GRCGYC 2 cut(s) 26, 35
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
AlwI GGATC 2 cut(s) 239, 306
Ama87I CYCGRG 2 cut(s) 231, 339
AoxI GGCC 2 cut(s) 3, 86
AseI ATTAAT 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 4, 44
AsuHPI GGTGA 3 cut(s) 30, 72, 255
AvaI CYCGRG 2 cut(s) 231, 339
AvaII GGWCC 1 cut(s) 44
BbsI GAAGAC 2 cut(s) 273, 285
BccI CCATC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 42
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 2 cut(s) 231, 339
BmgT120I GGNCC 2 cut(s) 4, 44
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 204
BpiI GAAGAC 2 cut(s) 273, 285
BsaHI GRCGYC 2 cut(s) 26, 35
BsaJI CCNNGG 2 cut(s) 83, 340
Bse118I RCCGGY 1 cut(s) 265
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 83, 340
BseGI GGATG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 111
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 2 cut(s) 5, 88
BsiEI CGRYCG 1 cut(s) 276
BsiHKCI CYCGRG 2 cut(s) 231, 339
BsiSI CCGG 1 cut(s) 266
BsnI GGCC 2 cut(s) 5, 88
BsoBI CYCGRG 2 cut(s) 231, 339
Bsp143I GATC 3 cut(s) 244, 311, 322
BspACI CCGC 3 cut(s) 17, 125, 269
BspANI GGCC 2 cut(s) 5, 88
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 239, 306
BsrBI CCGCTC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 83, 340
BssMI GATC 3 cut(s) 244, 311, 322
BssNI GRCGYC 2 cut(s) 26, 35
BssT1I CCWWGG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 42
BstACI GRCGYC 2 cut(s) 26, 35
BstF5I GGATG 1 cut(s) 284
BstKTI GATC 3 cut(s) 247, 314, 325
BstMBI GATC 3 cut(s) 244, 311, 322
BstMCI CGRYCG 1 cut(s) 276
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstV2I GAAGAC 2 cut(s) 273, 285
BsuRI GGCC 2 cut(s) 5, 88
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 284
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 4, 44
CseI GACGC 1 cut(s) 15
CsiI ACCWGGT 1 cut(s) 40
CviJI RGCY 4 cut(s) 5, 88, 99, 212
CviKI_1 RGCY 4 cut(s) 5, 88, 99, 212
DpnI GATC 3 cut(s) 246, 313, 324
DpnII GATC 3 cut(s) 244, 311, 322
Eco130I CCWWGG 1 cut(s) 83
Eco147I AGGCCT 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 44
Eco88I CYCGRG 2 cut(s) 231, 339
EcoRII CCWGG 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaiI YATR 1 cut(s) 176
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 270
HaeIII GGCC 2 cut(s) 5, 88
HapII CCGG 1 cut(s) 266
HgaI GACGC 1 cut(s) 15
Hin1I GRCGYC 2 cut(s) 26, 35
HinfI GANTC 6 cut(s) 49, 168, 236, 260, 278, 318
HpaII CCGG 1 cut(s) 266
HphI GGTGA 3 cut(s) 30, 72, 255
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 2 cut(s) 48, 244
Hpy188III TCNNGA 3 cut(s) 165, 231, 315
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 3 cut(s) 25, 37, 312
HpyAV CCTTC 3 cut(s) 140, 171, 345
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 2 cut(s) 26, 35
Kzo9I GATC 3 cut(s) 244, 311, 322
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 3 cut(s) 27, 54, 279
LweI GCATC 1 cut(s) 204
MabI ACCWGGT 1 cut(s) 40
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 36
MalI GATC 3 cut(s) 246, 313, 324
MbiI CCGCTC 1 cut(s) 127
MboI GATC 3 cut(s) 244, 311, 322
MboII GAAGA 4 cut(s) 125, 199, 273, 285
MluCI AATT 1 cut(s) 221
MlyI GAGTC 2 cut(s) 254, 287
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 7 cut(s) 84, 99, 122, 129, 132, 250, 335
MseI TTAA 1 cut(s) 224
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
NdeII GATC 3 cut(s) 244, 311, 322
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 36
PceI AGGCCT 1 cut(s) 88
PcsI WCGNNNNNNNCGW 3 cut(s) 29, 313, 337
PfeI GAWTC 4 cut(s) 49, 168, 236, 318
PflFI GACNNNGTC 2 cut(s) 25, 277
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 2 cut(s) 254, 286
PpsI GAGTC 2 cut(s) 254, 286
PshBI ATTAAT 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 4, 44
PsyI GACNNNGTC 2 cut(s) 25, 277
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 3 cut(s) 244, 311, 322
Sau96I GGNCC 2 cut(s) 4, 44
SchI GAGTC 2 cut(s) 254, 287
ScrFI CCNGG 1 cut(s) 42
SetI ASST 8 cut(s) 38, 43, 101, 110, 114, 121, 163, 356
SexAI ACCWGGT 1 cut(s) 40
SfaNI GCATC 1 cut(s) 204
SgrAI CRCCGGYG 1 cut(s) 265
SinI GGWCC 1 cut(s) 44
Sse9I AATT 1 cut(s) 221
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 3 cut(s) 17, 125, 269
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 1 cut(s) 83
TaiI ACGT 1 cut(s) 38
TaqI TCGA 3 cut(s) 166, 198, 321
TaqII GACCGA 1 cut(s) 290
TasI AATT 1 cut(s) 221
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 4 cut(s) 49, 168, 236, 318
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TseFI GTSAC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 3 cut(s) 142, 160, 273
TspGWI ACGGA 1 cut(s) 81
Tth111I GACNNNGTC 2 cut(s) 25, 277
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 29
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.