Rh4CG139500

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0018944
Physical Location & Seq
Forward (+)
27669488 .. 27669847
360 bp
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UTR
Exon/CDS
Intron
Rh4CG139500.1

Sequence Viewer

Length: 360 bp
ATGGGGAGAAAGAAGAAGTTCATCGACAAGAAAAAGGTTACTTTCCAATTAATCTCTCGAGATTCCTCAGATCCCAACGACGACGACGACTCACCCGGCGGCGACCGAGTCTTCATCCAAGTCTCCGGCAACCCAATGACGATCCCGAATCGATCTTGGCCGACGCGCCTGAGGACGAAGAAGGTGACAACTATTACGACCACGCTTTCGAAAACTCTGTGGCAGTGGCTCAGCCCCTGCTGGAGAAACAACTTTGATAATTTAGGTGAGGAATTTGCATTTGCATTAAGAAATAATGCATCTGAAATAGATATAATAAGTAGAACAACTTTTGTAAATGTGCTGGATTGTTTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

119

Amino Acids

13.73

Weight (kDa)

9.06

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0360321
rosa_laevigata RLG00000001332 RLG00000031214
rosa_roxburghii Rroxscaffold_2G00107350 Rroxscaffold_6G00419100
rosa_samantha Rh2BG059700 Rh2CG061600 Rh4CG139500 Rh5AG282300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 166
AciI CCGC 1 cut(s) 99
AclWI GGATC 2 cut(s) 65, 136
AcoI YGGCCR 1 cut(s) 158
AcsI RAATTY 1 cut(s) 272
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 2 cut(s) 65, 136
AlwNI CAGNNNCTG 1 cut(s) 237
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 272
ArsI GACNNNNNNTTYG 2 cut(s) 190, 222
AseI ATTAAT 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 168
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 3 cut(s) 84, 196, 278
AsuII TTCGAA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 57
AxyI CCTNAGG 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 103
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 127
BisI GCNGC 1 cut(s) 100
BlpI GCTNAGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 262
Bpu1102I GCTNAGC 1 cut(s) 230
Bpu14I TTCGAA 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 151
Bse21I CCTNAGG 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 151
BseGI GGATG 1 cut(s) 114
BseMII CTCAG 3 cut(s) 81, 161, 244
Bsh1236I CGCG 1 cut(s) 166
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 160
BshVI ATCGAT 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 2 cut(s) 96, 126
BsmAI GTCTC 1 cut(s) 127
BsnI GGCC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 209
Bsp143I GATC 3 cut(s) 70, 141, 152
Bsp1720I GCTNAGC 1 cut(s) 230
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 3 cut(s) 80, 162, 243
BspDI ATCGAT 1 cut(s) 151
BspFNI CGCG 1 cut(s) 166
BspPI GGATC 2 cut(s) 65, 136
BspT104I TTCGAA 1 cut(s) 209
BssMI GATC 3 cut(s) 70, 141, 152
BstBI TTCGAA 1 cut(s) 209
BstDEI CTNAG 3 cut(s) 67, 170, 230
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 3 cut(s) 73, 144, 155
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 3 cut(s) 70, 141, 152
BstMCI CGRYCG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 94
BstUI CGCG 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
Bsu15I ATCGAT 1 cut(s) 151
Bsu36I CCTNAGG 1 cut(s) 170
BsuRI GGCC 1 cut(s) 160
BsuTUI ATCGAT 1 cut(s) 151
BtsCI GGATG 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 230
CaiI CAGNNNCTG 1 cut(s) 237
CfoI GCGC 1 cut(s) 168
ClaI ATCGAT 1 cut(s) 151
CseI GACGC 1 cut(s) 172
CviJI RGCY 3 cut(s) 160, 229, 234
CviKI_1 RGCY 3 cut(s) 160, 229, 234
DdeI CTNAG 3 cut(s) 67, 170, 230
DpnI GATC 3 cut(s) 72, 143, 154
DpnII GATC 3 cut(s) 70, 141, 152
EaeI YGGCCR 1 cut(s) 158
Eco81I CCTNAGG 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 301
FaiI YATR 1 cut(s) 314
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 100
GlaI GCGC 1 cut(s) 167
GluI GCNGC 1 cut(s) 100
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 1 cut(s) 160
HapII CCGG 2 cut(s) 96, 126
HgaI GACGC 1 cut(s) 172
HhaI GCGC 1 cut(s) 168
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HinfI GANTC 4 cut(s) 62, 89, 108, 148
HpaII CCGG 2 cut(s) 96, 126
HphI GGTGA 3 cut(s) 84, 196, 278
Hpy188I TCNGA 2 cut(s) 70, 304
Hpy188III TCNNGA 3 cut(s) 57, 59, 145
Hpy99I CGWCG 4 cut(s) 83, 86, 89, 166
HpyAV CCTTC 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 278, 284, 299
HpyF3I CTNAG 3 cut(s) 67, 170, 230
HspAI GCGC 1 cut(s) 166
Kzo9I GATC 3 cut(s) 70, 141, 152
LpnPI CCDG 6 cut(s) 109, 139, 182, 226, 250, 329
LweI GCATC 1 cut(s) 308
MaeIII GTNAC 2 cut(s) 37, 184
MalI GATC 3 cut(s) 72, 143, 154
MboI GATC 3 cut(s) 70, 141, 152
MboII GAAGA 3 cut(s) 25, 103, 190
MflI RGATCY 1 cut(s) 70
MluCI AATT 3 cut(s) 47, 259, 272
MlyI GAGTC 2 cut(s) 83, 117
MnlI CCTC 3 cut(s) 76, 165, 262
Mph1103I ATGCAT 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 2 cut(s) 50, 287
MspI CCGG 2 cut(s) 96, 126
MspR9I CCNGG 1 cut(s) 96
MvnI CGCG 1 cut(s) 166
NciI CCSGG 1 cut(s) 96
NdeII GATC 3 cut(s) 70, 141, 152
NmuCI GTSAC 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 301
NspV TTCGAA 1 cut(s) 209
PaeR7I CTCGAG 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 62, 148
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 2 cut(s) 83, 116
PpsI GAGTC 2 cut(s) 83, 116
PshBI ATTAAT 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 237
PsuI RGATCY 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 50, 287
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 3 cut(s) 70, 141, 152
SchI GAGTC 2 cut(s) 83, 117
ScrFI CCNGG 1 cut(s) 96
SetI ASST 3 cut(s) 39, 186, 268
SfaNI GCATC 1 cut(s) 308
Sfr274I CTCGAG 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 3 cut(s) 47, 259, 272
SsiI CCGC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 94
TaqI TCGA 4 cut(s) 24, 58, 151, 209
TaqII GACCGA 1 cut(s) 120
TasI AATT 3 cut(s) 47, 259, 272
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 2 cut(s) 62, 148
Tru1I TTAA 2 cut(s) 50, 287
Tru9I TTAA 2 cut(s) 50, 287
TscAI CASTG 1 cut(s) 230
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 10, 103
TspRI CASTG 1 cut(s) 230
Tth111I GACNNNGTC 1 cut(s) 107
VspI ATTAAT 1 cut(s) 50
XapI RAATTY 1 cut(s) 272
XhoI CTCGAG 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.