RLG00000001332

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018944
Physical Location & Seq
Forward (+)
14187470 .. 14188118
649 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001332

Sequence Viewer

Length: 348 bp
ATGGGGAGAAAGAAGAAGTTCATCGACAAGAAAAAGGCTACTTTCCAATTAATCTCCCGAGATTCCTCCGATCCCAACGACGACGACTCACCCGGCGGCGACCGAGTCTTCATCCAAGTCTCTGGCAACCCAAAGGCGATCCCGATTCGATCTTGGCCTACGCGCCTGAGGACAAAGAAGGTGACAACTATTACGACCACACTTTCGAAAACTCTGTGGTGGTGGCTCAACCCCTGCTGGAGAAACAACTTTGATAATTTTGGTTCATGTAAAAAGAAGAATGACCAAGGAGGAGAAGCTGGCATTAGTGAAAGCACGGAGGGAGGAAAGAGGGAAGTACATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

116

Amino Acids

13.0

Weight (kDa)

9.9

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018944)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0360321
rosa_laevigata RLG00000001332 RLG00000031214
rosa_roxburghii Rroxscaffold_2G00107350 Rroxscaffold_6G00419100
rosa_samantha Rh2BG059700 Rh2CG061600 Rh4CG139500 Rh5AG282300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 163
AciI CCGC 1 cut(s) 96
AclWI GGATC 2 cut(s) 65, 133
AfaI GTAC 1 cut(s) 339
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 2 cut(s) 65, 133
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 187, 219
AseI ATTAAT 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 165
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 2 cut(s) 81, 193
AsuII TTCGAA 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 57
AxyI CCTNAGG 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 100
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 346
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 93
BmeT110I CYCGRG 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 259
Bpu14I TTCGAA 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 286
Bse21I CCTNAGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 124
BsnI GGCC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 206
Bsp143I GATC 3 cut(s) 70, 138, 149
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 159
BspFNI CGCG 1 cut(s) 163
BspPI GGATC 2 cut(s) 65, 133
BspT104I TTCGAA 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 3 cut(s) 70, 138, 149
BssT1I CCWWGG 1 cut(s) 286
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 163
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 3 cut(s) 73, 141, 152
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 3 cut(s) 70, 138, 149
BstMCI CGRYCG 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 91
BstUI CGCG 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 122
Bsu36I CCTNAGG 1 cut(s) 167
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 338
CviAII CATG 2 cut(s) 267, 341
CviJI RGCY 5 cut(s) 38, 157, 226, 299, 345
CviKI_1 RGCY 5 cut(s) 38, 157, 226, 299, 345
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 1 cut(s) 167
DpnI GATC 3 cut(s) 72, 140, 151
DpnII GATC 3 cut(s) 70, 138, 149
Eco130I CCWWGG 1 cut(s) 286
Eco81I CCTNAGG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 270, 344
FaiI YATR 2 cut(s) 268, 342
FatI CATG 2 cut(s) 266, 340
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 1 cut(s) 346
GlaI GCGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 259
HaeIII GGCC 1 cut(s) 157
HapII CCGG 1 cut(s) 93
HhaI GCGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 270, 344
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 4 cut(s) 62, 86, 105, 145
HpaII CCGG 1 cut(s) 93
HphI GGTGA 2 cut(s) 81, 193
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 57, 142
Hpy99I CGWCG 2 cut(s) 83, 86
HpyAV CCTTC 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 2 cut(s) 270, 344
HspAI GCGC 1 cut(s) 163
Kzo9I GATC 3 cut(s) 70, 138, 149
LpnPI CCDG 6 cut(s) 106, 108, 179, 223, 247, 285
MaeI CTAG 1 cut(s) 346
MaeIII GTNAC 1 cut(s) 181
MalI GATC 3 cut(s) 72, 140, 151
MboI GATC 3 cut(s) 70, 138, 149
MboII GAAGA 3 cut(s) 25, 100, 289
MluCI AATT 2 cut(s) 47, 256
MlyI GAGTC 2 cut(s) 80, 114
MnlI CCTC 6 cut(s) 76, 162, 284, 313, 317, 324
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 1 cut(s) 50
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 93
MvnI CGCG 1 cut(s) 163
NciI CCSGG 1 cut(s) 93
NdeII GATC 3 cut(s) 70, 138, 149
NlaIII CATG 2 cut(s) 270, 344
NmuCI GTSAC 1 cut(s) 181
NspV TTCGAA 1 cut(s) 206
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 62, 145
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 2 cut(s) 80, 113
PpsI GAGTC 2 cut(s) 80, 113
PshBI ATTAAT 1 cut(s) 50
PsyI GACNNNGTC 1 cut(s) 104
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 3 cut(s) 70, 138, 149
SchI GAGTC 2 cut(s) 80, 114
ScrFI CCNGG 1 cut(s) 93
SetI ASST 2 cut(s) 183, 301
SfuI TTCGAA 1 cut(s) 206
Sse9I AATT 2 cut(s) 47, 256
SsiI CCGC 1 cut(s) 96
SspMI CTAG 1 cut(s) 346
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 286
TaqI TCGA 3 cut(s) 24, 148, 206
TaqII GACCGA 1 cut(s) 117
TasI AATT 2 cut(s) 47, 256
TatI WGTACW 1 cut(s) 337
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 2 cut(s) 62, 145
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 10, 100, 255
TspGWI ACGGA 1 cut(s) 332
Tth111I GACNNNGTC 1 cut(s) 104
VspI ATTAAT 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.