RchiOBHm_Chr1g0368701
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019340
Physical Location & Seq
Reverse (-)
58699425 .. 58701243
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59303

Sequence Viewer

Length: 975 bp
ATGCCTAGCAGAAAAGAGAGGTTCCGGCTGCAGGATCACCAGGACTTGTTGGTGACAGAATTTAACCGCCTTGGACAGCTTATTCATCCAAATCTTGTAAAAATGATTGGCTACTGTCTAGAGGATAACAATGGGCTCCTGGTGTATGAATTTATGCCTCGAGGCAGCTTGGGAGTACATCTACATTCAAGGGATCCTCAATCACAACCGCTTTCATGGAACCTTCGCATGAAGATTGCGCTTAGTGCTGCTAAGGGTCTAGCATTTCTTCACGGTGACAAGGCAAAAATGATATACGGGGACTTCAAACCTTCTAATATTCTTCTTGATTCAAACTATGAAGCCAAAATCTATGGTTATGGCTTGGTAGAGGATGATGAGCTTGAAGGTTATAGAAGGCTTAGAGGCCATGACACTGAATGCTCTCTGGATTCATCGTACGCAGCTCCCGAGTATCTTACGGACACACACAGAGGAGAATATGAGTACAGATTTGAAAGCAGCGATGATGATGAAATGGATGACTTTGTTCGCTTGAGTCCCAAAAGTGATGTCTACAGTTTTGGGATTGTTCTGCTCGAAATGATATCCGGCAGACAACCTCTTGACAATACGAAGCCAATGAAAGAGCGCAAGTTAGTGCAATGGGCGAAGCCTTACCTTACCAGAAGAAGAAAAATTCTCAAAATTATTGATGATCGTATTGAAGGCCAGTACTCCAAAGGTGGAGCTATTAGAGCAGCTAAGCTTGTAGCTCAATGCTTATCACTAGATCCCAAGGGAAGGCCGAACATGAATGATGTGGTAAAAGCATTGGAGCAGCTTCAGGAATCCAGTGGCATGGCTGGCTTTGGAATTTGTGAAGATGAACCTTCCTGCAGAAATCAAAGTAGGAAGTATCAATCAGAAAGGCAATGCAATAACTGCTTCTTATTCCAGGCAATCTGTTTCCGGCAGCCATGCATAAGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

324

Amino Acids

37.35

Weight (kDa)

7.03

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 12 - 272 6.7e-28 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 13 - 270 1e-26 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019340)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0368701
rosa_laevigata RLG00000027196
rosa_multiflora Rmu_sc0001791.1_g000013 Rmu_sc0024672.1_g000001
rosa_rugosa Rorug01G0343800
rosa_samantha Rh1AG351300 Rh1BG315000
rosa_wichuraiana Rw0G021690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 159
AccI GTMKAC 1 cut(s) 555
AciI CCGC 2 cut(s) 67, 209
AclWI GGATC 4 cut(s) 42, 188, 201, 767
AcsI RAATTY 4 cut(s) 59, 149, 678, 855
AcuI CTGAAG 1 cut(s) 809
AfaI GTAC 4 cut(s) 177, 440, 488, 716
AfiI CCNNNNNNNGG 2 cut(s) 31, 783
AgsI TTSAA 6 cut(s) 189, 307, 333, 386, 497, 707
AjnI CCWGG 3 cut(s) 39, 138, 936
AluBI AGCT 9 cut(s) 79, 168, 382, 446, 731, 743, 748, 755, 823
AluI AGCT 9 cut(s) 79, 168, 382, 446, 731, 743, 748, 755, 823
AlwI GGATC 4 cut(s) 42, 188, 201, 767
Ama87I CYCGRG 2 cut(s) 159, 449
AoxI GGCC 3 cut(s) 406, 709, 785
ApeKI GCWGC 8 cut(s) 28, 165, 248, 443, 501, 740, 820, 955
ApoI RAATTY 4 cut(s) 59, 149, 678, 855
ArsI GACNNNNNNTTYG 2 cut(s) 537, 569
AspLEI GCGC 2 cut(s) 241, 633
AsuHPI GGTGA 3 cut(s) 29, 64, 287
AvaI CYCGRG 2 cut(s) 159, 449
BamHI GGATCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 138
BbvI GCAGC 8 cut(s) 15, 177, 235, 455, 513, 752, 832, 967
BciT130I CCWGG 3 cut(s) 41, 140, 938
BfaI CTAG 4 cut(s) 6, 119, 260, 770
BfmI CTRYAG 3 cut(s) 29, 556, 877
BisI GCNGC 8 cut(s) 29, 166, 249, 444, 502, 741, 821, 956
BlpI GCTNAGC 1 cut(s) 744
BlsI GCNGC 8 cut(s) 30, 167, 250, 445, 503, 742, 822, 957
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 3 cut(s) 41, 140, 938
BmeT110I CYCGRG 2 cut(s) 159, 449
BmiI GGNNCC 4 cut(s) 23, 137, 195, 221
BmrFI CCNGG 3 cut(s) 41, 140, 938
Bpu10I CCTNAGC 1 cut(s) 252
Bpu1102I GCTNAGC 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 556
BsaJI CCNNGG 2 cut(s) 70, 777
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 783
Bse1I ACTGG 2 cut(s) 712, 834
Bse3DI GCAATG 2 cut(s) 650, 920
BseBI CCWGG 3 cut(s) 41, 140, 938
BseDI CCNNGG 2 cut(s) 70, 777
BseGI GGATG 3 cut(s) 85, 379, 526
BseLI CCNNNNNNNGG 2 cut(s) 31, 783
BseMI GCAATG 2 cut(s) 650, 920
BseNI ACTGG 2 cut(s) 712, 834
BseRI GAGGAG 1 cut(s) 489
BseXI GCAGC 8 cut(s) 15, 177, 235, 455, 513, 752, 832, 967
BshFI GGCC 3 cut(s) 408, 711, 787
BsiHKCI CYCGRG 2 cut(s) 159, 449
BsiSI CCGG 3 cut(s) 25, 591, 952
BsiWI CGTACG 1 cut(s) 438
BslFI GGGAC 2 cut(s) 314, 525
BslI CCNNNNNNNGG 2 cut(s) 31, 783
BsmFI GGGAC 2 cut(s) 314, 525
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 3 cut(s) 408, 711, 787
BsoBI CYCGRG 2 cut(s) 159, 449
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 4 cut(s) 34, 193, 697, 772
Bsp1720I GCTNAGC 1 cut(s) 744
BspACI CCGC 2 cut(s) 67, 209
BspANI GGCC 3 cut(s) 408, 711, 787
BspLI GGNNCC 4 cut(s) 23, 137, 195, 221
BspMAI CTGCAG 2 cut(s) 33, 881
BspPI GGATC 4 cut(s) 42, 188, 201, 767
BsrDI GCAATG 2 cut(s) 650, 920
BsrI ACTGG 2 cut(s) 712, 834
BssECI CCNNGG 2 cut(s) 70, 777
BssMI GATC 4 cut(s) 34, 193, 697, 772
BssT1I CCWWGG 2 cut(s) 70, 777
Bst2UI CCWGG 3 cut(s) 41, 140, 938
Bst4CI ACNGT 3 cut(s) 116, 275, 560
BstAPI GCANNNNNTGC 1 cut(s) 924
BstC8I GCNNGC 1 cut(s) 847
BstDEI CTNAG 4 cut(s) 242, 252, 401, 744
BstF5I GGATG 3 cut(s) 85, 379, 526
BstHHI GCGC 2 cut(s) 241, 633
BstKTI GATC 4 cut(s) 37, 196, 700, 775
BstMBI GATC 4 cut(s) 34, 193, 697, 772
BstMWI GCNNNNNNNGC 4 cut(s) 245, 737, 846, 924
BstNI CCWGG 3 cut(s) 41, 140, 938
BstSCI CCNGG 3 cut(s) 39, 138, 936
BstSFI CTRYAG 3 cut(s) 29, 556, 877
BstV1I GCAGC 8 cut(s) 15, 177, 235, 455, 513, 752, 832, 967
BstX2I RGATCY 2 cut(s) 193, 772
BstXI CCANNNNNNTGG 1 cut(s) 841
BstYI RGATCY 2 cut(s) 193, 772
BsuRI GGCC 3 cut(s) 408, 711, 787
BtgZI GCGATG 1 cut(s) 519
BtsCI GGATG 3 cut(s) 85, 379, 526
BtsIMutI CAGTG 2 cut(s) 414, 841
Cac8I GCNNGC 1 cut(s) 847
CfoI GCGC 2 cut(s) 241, 633
Csp6I GTAC 4 cut(s) 176, 439, 487, 715
CviAII CATG 6 cut(s) 216, 229, 410, 793, 841, 960
CviQI GTAC 4 cut(s) 176, 439, 487, 715
DdeI CTNAG 4 cut(s) 242, 252, 401, 744
DpnI GATC 4 cut(s) 36, 195, 699, 774
DpnII GATC 4 cut(s) 34, 193, 697, 772
Eco130I CCWWGG 2 cut(s) 70, 777
Eco24I GRGCYC 1 cut(s) 138
Eco32I GATATC 1 cut(s) 588
Eco57I CTGAAG 1 cut(s) 809
Eco88I CYCGRG 2 cut(s) 159, 449
EcoRII CCWGG 3 cut(s) 39, 138, 936
EcoRV GATATC 1 cut(s) 588
EcoT14I CCWWGG 2 cut(s) 70, 777
EcoT22I ATGCAT 1 cut(s) 965
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 2 cut(s) 70, 777
FaeI CATG 6 cut(s) 219, 232, 413, 796, 844, 963
FaqI GGGAC 2 cut(s) 314, 525
FatI CATG 6 cut(s) 215, 228, 409, 792, 840, 959
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 8 cut(s) 29, 166, 249, 444, 502, 741, 821, 956
FokI GGATG 3 cut(s) 72, 386, 533
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 8 cut(s) 29, 166, 249, 444, 502, 741, 821, 956
FspBI CTAG 4 cut(s) 6, 119, 260, 770
GlaI GCGC 2 cut(s) 240, 632
GluI GCNGC 8 cut(s) 29, 166, 249, 444, 502, 741, 821, 956
HaeIII GGCC 3 cut(s) 408, 711, 787
HapII CCGG 3 cut(s) 25, 591, 952
HhaI GCGC 2 cut(s) 241, 633
Hin1II CATG 6 cut(s) 219, 232, 413, 796, 844, 963
Hin6I GCGC 2 cut(s) 239, 631
HinP1I GCGC 2 cut(s) 239, 631
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 4 cut(s) 329, 431, 538, 830
HpaII CCGG 3 cut(s) 25, 591, 952
HphI GGTGA 3 cut(s) 29, 64, 287
Hpy166II GTNNAC 1 cut(s) 556
Hpy188I TCNGA 1 cut(s) 907
Hpy188III TCNNGA 6 cut(s) 119, 326, 428, 449, 605, 827
Hpy8I GTNNAC 1 cut(s) 556
HpyAV CCTTC 7 cut(s) 233, 321, 380, 390, 701, 777, 882
HpyCH4III ACNGT 3 cut(s) 116, 275, 560
HpyCH4V TGCA 5 cut(s) 31, 643, 879, 918, 963
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 737, 846, 924
HpyF3I CTNAG 4 cut(s) 242, 252, 401, 744
Hsp92II CATG 6 cut(s) 219, 232, 413, 796, 844, 963
HspAI GCGC 2 cut(s) 239, 631
Kzo9I GATC 4 cut(s) 34, 193, 697, 772
LmnI GCTCC 4 cut(s) 141, 451, 728, 817
Lsp1109I GCAGC 8 cut(s) 15, 177, 235, 455, 513, 752, 832, 967
MaeI CTAG 4 cut(s) 6, 119, 260, 770
MaeIII GTNAC 2 cut(s) 52, 275
MalI GATC 4 cut(s) 36, 195, 699, 774
MboI GATC 4 cut(s) 34, 193, 697, 772
MboII GAAGA 6 cut(s) 244, 260, 314, 681, 684, 875
MflI RGATCY 2 cut(s) 193, 772
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 5 cut(s) 59, 149, 678, 687, 855
MlyI GAGTC 1 cut(s) 547
MnlI CCTC 9 cut(s) 12, 115, 155, 168, 207, 364, 398, 467, 612
Mph1103I ATGCAT 1 cut(s) 965
MseI TTAA 1 cut(s) 63
MspI CCGG 3 cut(s) 25, 591, 952
MspR9I CCNGG 3 cut(s) 41, 140, 938
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 3 cut(s) 41, 140, 938
MwoI GCNNNNNNNGC 4 cut(s) 245, 737, 846, 924
NdeII GATC 4 cut(s) 34, 193, 697, 772
NlaIII CATG 6 cut(s) 219, 232, 413, 796, 844, 963
NlaIV GGNNCC 4 cut(s) 23, 137, 195, 221
NmuCI GTSAC 2 cut(s) 52, 275
NsiI ATGCAT 1 cut(s) 965
PaeR7I CTCGAG 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PctI GAATGC 1 cut(s) 425
PfeI GAWTC 3 cut(s) 329, 431, 830
Pfl23II CGTACG 1 cut(s) 438
PkrI GCNGC 8 cut(s) 30, 167, 250, 445, 503, 742, 822, 957
PleI GAGTC 1 cut(s) 546
PpsI GAGTC 1 cut(s) 546
Psp6I CCWGG 3 cut(s) 39, 138, 936
PspGI CCWGG 3 cut(s) 39, 138, 936
PspLI CGTACG 1 cut(s) 438
PspN4I GGNNCC 4 cut(s) 23, 137, 195, 221
PspXI VCTCGAGB 1 cut(s) 159
PstI CTGCAG 2 cut(s) 33, 881
PsuI RGATCY 2 cut(s) 193, 772
RsaI GTAC 4 cut(s) 177, 440, 488, 716
RsaNI GTAC 4 cut(s) 176, 439, 487, 715
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 8 cut(s) 29, 166, 249, 444, 502, 741, 821, 956
Sau3AI GATC 4 cut(s) 34, 193, 697, 772
ScaI AGTACT 1 cut(s) 716
SchI GAGTC 1 cut(s) 547
ScrFI CCNGG 3 cut(s) 41, 140, 938
SduI GDGCHC 1 cut(s) 138
SfcI CTRYAG 3 cut(s) 29, 556, 877
Sfr274I CTCGAG 1 cut(s) 159
SlaI CTCGAG 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 159, 535
SmoI CTYRAG 2 cut(s) 159, 535
Sse9I AATT 5 cut(s) 59, 149, 678, 687, 855
SsiI CCGC 2 cut(s) 67, 209
SspI AATATT 1 cut(s) 319
SspMI CTAG 4 cut(s) 6, 119, 260, 770
StyD4I CCNGG 3 cut(s) 39, 138, 936
StyI CCWWGG 2 cut(s) 70, 777
TaaI ACNGT 3 cut(s) 116, 275, 560
TaqI TCGA 2 cut(s) 160, 579
TasI AATT 5 cut(s) 59, 149, 678, 687, 855
TatI WGTACW 3 cut(s) 175, 486, 714
TfiI GAWTC 3 cut(s) 329, 431, 830
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 421, 841
TseFI GTSAC 2 cut(s) 52, 275
TseI GCWGC 8 cut(s) 28, 165, 248, 443, 501, 740, 820, 955
Tsp45I GTSAC 2 cut(s) 52, 275
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 2 cut(s) 421, 841
XapI RAATTY 4 cut(s) 59, 149, 678, 855
XbaI TCTAGA 1 cut(s) 118
XhoI CTCGAG 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 555
XspI CTAG 4 cut(s) 6, 119, 260, 770
ZrmI AGTACT 1 cut(s) 716
Zsp2I ATGCAT 1 cut(s) 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.